Experiment: Chloramphenicol 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2485 and Shew_2486 are separated by 9 nucleotides Shew_2486 and Shew_2487 are separated by 7 nucleotides Shew_2487 and Shew_2488 are separated by 51 nucleotides Shew_2488 and ffs are separated by 279 nucleotides ffs and Shew_2489 are separated by 165 nucleotides
Shew_2485: Shew_2485 - primosomal replication protein N'', putative (RefSeq), at 2,925,250 to 2,925,912
_2485
Shew_2486: Shew_2486 - hypothetical protein (RefSeq), at 2,925,922 to 2,926,611
_2486
Shew_2487: Shew_2487 - histone deacetylase superfamily protein (RefSeq), at 2,926,619 to 2,927,521
_2487
Shew_2488: Shew_2488 - hypothetical protein (RefSeq), at 2,927,573 to 2,927,851
_2488
Shew_R0086: ffs - SRP RNA; RNA component of signal recognition particle (NCBI), at 2,928,131 to 2,928,247
ffs
Shew_2489: Shew_2489 - helix-hairpin-helix repeat-containing competence protein ComEA (RefSeq), at 2,928,413 to 2,928,712
_2489
Position (kb)
2926
2927
2928 Strain fitness (log2 ratio)
-1
0
1 at 2926.763 kb on - strand, within Shew_2487 at 2926.770 kb on + strand, within Shew_2487 at 2927.129 kb on + strand, within Shew_2487 at 2927.340 kb on + strand, within Shew_2487 at 2927.348 kb on - strand, within Shew_2487 at 2928.448 kb on + strand, within Shew_2489 at 2928.456 kb on - strand, within Shew_2489
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 5 mg/ml remove 2,926,763 - Shew_2487 0.16 -0.0 2,926,770 + Shew_2487 0.17 +0.2 2,927,129 + Shew_2487 0.56 -0.6 2,927,340 + Shew_2487 0.80 -0.8 2,927,348 - Shew_2487 0.81 -0.3 2,928,448 + Shew_2489 0.12 +0.3 2,928,456 - Shew_2489 0.14 -0.6
Or see this region's nucleotide sequence