Strain Fitness in Shewanella loihica PV-4 around Shew_2487

Experiment: Chloramphenicol 5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2485 and Shew_2486 are separated by 9 nucleotidesShew_2486 and Shew_2487 are separated by 7 nucleotidesShew_2487 and Shew_2488 are separated by 51 nucleotidesShew_2488 and ffs are separated by 279 nucleotidesffs and Shew_2489 are separated by 165 nucleotides Shew_2485: Shew_2485 - primosomal replication protein N'', putative (RefSeq), at 2,925,250 to 2,925,912 _2485 Shew_2486: Shew_2486 - hypothetical protein (RefSeq), at 2,925,922 to 2,926,611 _2486 Shew_2487: Shew_2487 - histone deacetylase superfamily protein (RefSeq), at 2,926,619 to 2,927,521 _2487 Shew_2488: Shew_2488 - hypothetical protein (RefSeq), at 2,927,573 to 2,927,851 _2488 Shew_R0086: ffs - SRP RNA; RNA component of signal recognition particle (NCBI), at 2,928,131 to 2,928,247 ffs Shew_2489: Shew_2489 - helix-hairpin-helix repeat-containing competence protein ComEA (RefSeq), at 2,928,413 to 2,928,712 _2489 Position (kb) 2926 2927 2928Strain fitness (log2 ratio) -1 0 1at 2926.763 kb on - strand, within Shew_2487at 2926.770 kb on + strand, within Shew_2487at 2927.129 kb on + strand, within Shew_2487at 2927.340 kb on + strand, within Shew_2487at 2927.348 kb on - strand, within Shew_2487at 2928.448 kb on + strand, within Shew_2489at 2928.456 kb on - strand, within Shew_2489

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 5 mg/ml
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2,926,763 - Shew_2487 0.16 -0.0
2,926,770 + Shew_2487 0.17 +0.2
2,927,129 + Shew_2487 0.56 -0.6
2,927,340 + Shew_2487 0.80 -0.8
2,927,348 - Shew_2487 0.81 -0.3
2,928,448 + Shew_2489 0.12 +0.3
2,928,456 - Shew_2489 0.14 -0.6

Or see this region's nucleotide sequence