Experiment: Chloramphenicol 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0787 and Shew_0788 are separated by 114 nucleotides Shew_0788 and Shew_0789 are separated by 89 nucleotides Shew_0789 and Shew_0790 are separated by 16 nucleotides Shew_0790 and Shew_0791 are separated by 347 nucleotides
Shew_0787: Shew_0787 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 899,614 to 900,603
_0787
Shew_0788: Shew_0788 - dienelactone hydrolase (RefSeq), at 900,718 to 901,455
_0788
Shew_0789: Shew_0789 - Mg2+ transporter protein, CorA family protein (RefSeq), at 901,545 to 902,513
_0789
Shew_0790: Shew_0790 - hypothetical protein (RefSeq), at 902,530 to 903,081
_0790
Shew_0791: Shew_0791 - spermine synthase (RefSeq), at 903,429 to 904,172
_0791
Position (kb) 901
902
903 Strain fitness (log2 ratio) -2
-1
0
1 at 900.552 kb on - strand at 900.948 kb on - strand, within Shew_0788 at 900.948 kb on - strand, within Shew_0788 at 901.183 kb on + strand, within Shew_0788 at 901.457 kb on - strand at 901.500 kb on - strand at 901.783 kb on + strand, within Shew_0789 at 901.783 kb on + strand, within Shew_0789 at 901.851 kb on - strand, within Shew_0789 at 901.970 kb on - strand, within Shew_0789 at 902.260 kb on + strand, within Shew_0789 at 902.268 kb on - strand, within Shew_0789 at 902.268 kb on - strand, within Shew_0789 at 902.491 kb on + strand at 902.579 kb on + strand at 902.719 kb on + strand, within Shew_0790 at 902.868 kb on - strand, within Shew_0790 at 902.967 kb on + strand, within Shew_0790 at 902.975 kb on - strand, within Shew_0790 at 903.226 kb on - strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.256 kb on - strand at 903.256 kb on - strand at 903.292 kb on + strand at 903.294 kb on + strand at 903.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 5 mg/ml remove 900,552 - -0.2 900,948 - Shew_0788 0.31 +0.8 900,948 - Shew_0788 0.31 +0.2 901,183 + Shew_0788 0.63 +0.0 901,457 - +0.2 901,500 - +0.2 901,783 + Shew_0789 0.25 -1.9 901,783 + Shew_0789 0.25 +0.2 901,851 - Shew_0789 0.32 -0.6 901,970 - Shew_0789 0.44 +1.0 902,260 + Shew_0789 0.74 +0.3 902,268 - Shew_0789 0.75 -0.1 902,268 - Shew_0789 0.75 -0.3 902,491 + +0.9 902,579 + -0.2 902,719 + Shew_0790 0.34 +0.2 902,868 - Shew_0790 0.61 +0.3 902,967 + Shew_0790 0.79 +0.3 902,975 - Shew_0790 0.81 -2.0 903,226 - +0.4 903,248 + -0.1 903,248 + +0.6 903,248 + -1.5 903,248 + -0.4 903,248 + +0.2 903,256 - -0.7 903,256 - +0.2 903,292 + -1.0 903,294 + +0.3 903,381 - +0.5
Or see this region's nucleotide sequence