Strain Fitness in Shewanella loihica PV-4 around Shew_0590

Experiment: Chloramphenicol 5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0589 and Shew_0590 are separated by 134 nucleotidesShew_0590 and Shew_0591 are separated by 150 nucleotides Shew_0589: Shew_0589 - alpha/beta hydrolase fold (RefSeq), at 666,048 to 667,031 _0589 Shew_0590: Shew_0590 - hypothetical protein (RefSeq), at 667,166 to 667,672 _0590 Shew_0591: Shew_0591 - glucose-methanol-choline oxidoreductase (RefSeq), at 667,823 to 669,412 _0591 Position (kb) 667 668Strain fitness (log2 ratio) -1 0 1 2at 666.917 kb on + strand, within Shew_0589at 666.946 kb on - strandat 667.371 kb on + strand, within Shew_0590at 667.568 kb on - strand, within Shew_0590at 667.568 kb on - strand, within Shew_0590at 667.722 kb on + strandat 667.784 kb on + strandat 667.792 kb on - strandat 668.009 kb on - strand, within Shew_0591at 668.440 kb on + strand, within Shew_0591at 668.500 kb on + strand, within Shew_0591

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 5 mg/ml
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666,917 + Shew_0589 0.88 -1.3
666,946 - +0.2
667,371 + Shew_0590 0.40 +2.2
667,568 - Shew_0590 0.79 +0.2
667,568 - Shew_0590 0.79 +0.9
667,722 + -0.3
667,784 + +1.1
667,792 - +0.5
668,009 - Shew_0591 0.12 -0.2
668,440 + Shew_0591 0.39 +0.5
668,500 + Shew_0591 0.43 +0.0

Or see this region's nucleotide sequence