Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.919.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.918.1 and Xcc-8004.919.1 are separated by 59 nucleotidesXcc-8004.919.1 and Xcc-8004.921.1 overlap by 23 nucleotides Xcc-8004.918.1: Xcc-8004.918.1 - Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13), at 862,275 to 863,330 Xcc-8004.918.1 Xcc-8004.919.1: Xcc-8004.919.1 - Nicotinamide phosphoribosyltransferase (EC 2.4.2.12), at 863,390 to 864,796 Xcc-8004.919.1 Xcc-8004.921.1: Xcc-8004.921.1 - FIG01210236: hypothetical protein, at 864,774 to 865,919 Xcc-8004.921.1 Position (kb) 863 864 865Strain fitness (log2 ratio) -2 -1 0 1at 862.518 kb on + strand, within Xcc-8004.918.1at 862.518 kb on + strand, within Xcc-8004.918.1at 862.519 kb on - strand, within Xcc-8004.918.1at 862.519 kb on - strand, within Xcc-8004.918.1at 862.519 kb on - strand, within Xcc-8004.918.1at 862.639 kb on - strand, within Xcc-8004.918.1at 862.639 kb on - strand, within Xcc-8004.918.1at 862.639 kb on - strand, within Xcc-8004.918.1at 862.639 kb on - strand, within Xcc-8004.918.1at 862.641 kb on + strand, within Xcc-8004.918.1at 862.719 kb on + strand, within Xcc-8004.918.1at 862.720 kb on - strand, within Xcc-8004.918.1at 862.794 kb on + strand, within Xcc-8004.918.1at 862.794 kb on + strand, within Xcc-8004.918.1at 862.794 kb on + strand, within Xcc-8004.918.1at 862.795 kb on - strand, within Xcc-8004.918.1at 862.833 kb on + strand, within Xcc-8004.918.1at 862.833 kb on + strand, within Xcc-8004.918.1at 862.834 kb on - strand, within Xcc-8004.918.1at 862.834 kb on - strand, within Xcc-8004.918.1at 862.872 kb on + strand, within Xcc-8004.918.1at 862.899 kb on + strand, within Xcc-8004.918.1at 863.284 kb on - strandat 863.396 kb on + strandat 863.396 kb on + strandat 863.396 kb on + strandat 863.429 kb on + strandat 863.429 kb on + strandat 863.430 kb on - strandat 863.430 kb on - strandat 863.430 kb on - strandat 863.507 kb on + strandat 863.507 kb on + strandat 863.778 kb on - strand, within Xcc-8004.919.1at 863.999 kb on - strand, within Xcc-8004.919.1at 864.032 kb on + strand, within Xcc-8004.919.1at 864.033 kb on - strand, within Xcc-8004.919.1at 864.033 kb on - strand, within Xcc-8004.919.1at 864.119 kb on + strand, within Xcc-8004.919.1at 864.119 kb on + strand, within Xcc-8004.919.1at 864.120 kb on - strand, within Xcc-8004.919.1at 864.182 kb on + strand, within Xcc-8004.919.1at 864.182 kb on + strand, within Xcc-8004.919.1at 864.182 kb on + strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.356 kb on + strand, within Xcc-8004.919.1at 864.356 kb on + strand, within Xcc-8004.919.1at 864.357 kb on - strand, within Xcc-8004.919.1at 864.357 kb on - strand, within Xcc-8004.919.1at 864.450 kb on - strand, within Xcc-8004.919.1at 864.572 kb on + strand, within Xcc-8004.919.1at 864.572 kb on + strand, within Xcc-8004.919.1at 864.572 kb on + strand, within Xcc-8004.919.1at 864.572 kb on + strand, within Xcc-8004.919.1at 864.573 kb on - strand, within Xcc-8004.919.1at 864.573 kb on - strand, within Xcc-8004.919.1at 864.666 kb on + strandat 864.667 kb on - strandat 864.800 kb on - strandat 864.800 kb on - strandat 864.800 kb on - strandat 864.800 kb on - strandat 864.999 kb on + strand, within Xcc-8004.921.1at 865.104 kb on + strand, within Xcc-8004.921.1at 865.105 kb on - strand, within Xcc-8004.921.1at 865.266 kb on + strand, within Xcc-8004.921.1at 865.267 kb on - strand, within Xcc-8004.921.1at 865.267 kb on - strand, within Xcc-8004.921.1at 865.267 kb on - strand, within Xcc-8004.921.1at 865.534 kb on - strand, within Xcc-8004.921.1at 865.619 kb on + strand, within Xcc-8004.921.1at 865.629 kb on + strand, within Xcc-8004.921.1at 865.629 kb on + strand, within Xcc-8004.921.1at 865.630 kb on - strand, within Xcc-8004.921.1at 865.630 kb on - strand, within Xcc-8004.921.1at 865.630 kb on - strand, within Xcc-8004.921.1at 865.728 kb on + strand, within Xcc-8004.921.1at 865.728 kb on + strand, within Xcc-8004.921.1at 865.729 kb on - strand, within Xcc-8004.921.1at 865.731 kb on + strand, within Xcc-8004.921.1at 865.731 kb on + strand, within Xcc-8004.921.1at 865.731 kb on + strand, within Xcc-8004.921.1at 865.732 kb on - strand, within Xcc-8004.921.1at 865.732 kb on - strand, within Xcc-8004.921.1at 865.732 kb on - strand, within Xcc-8004.921.1at 865.795 kb on - strand, within Xcc-8004.921.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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862,518 + Xcc-8004.918.1 0.23 -0.3
862,518 + Xcc-8004.918.1 0.23 +0.4
862,519 - Xcc-8004.918.1 0.23 +1.2
862,519 - Xcc-8004.918.1 0.23 +0.5
862,519 - Xcc-8004.918.1 0.23 +1.0
862,639 - Xcc-8004.918.1 0.34 -0.5
862,639 - Xcc-8004.918.1 0.34 -0.6
862,639 - Xcc-8004.918.1 0.34 -0.4
862,639 - Xcc-8004.918.1 0.34 -1.3
862,641 + Xcc-8004.918.1 0.35 -0.3
862,719 + Xcc-8004.918.1 0.42 -0.5
862,720 - Xcc-8004.918.1 0.42 +0.1
862,794 + Xcc-8004.918.1 0.49 -0.8
862,794 + Xcc-8004.918.1 0.49 -0.3
862,794 + Xcc-8004.918.1 0.49 -0.2
862,795 - Xcc-8004.918.1 0.49 +0.7
862,833 + Xcc-8004.918.1 0.53 -0.7
862,833 + Xcc-8004.918.1 0.53 -2.1
862,834 - Xcc-8004.918.1 0.53 +1.2
862,834 - Xcc-8004.918.1 0.53 -0.2
862,872 + Xcc-8004.918.1 0.57 +0.1
862,899 + Xcc-8004.918.1 0.59 -1.5
863,284 - +1.1
863,396 + -0.4
863,396 + +0.9
863,396 + +0.1
863,429 + -0.4
863,429 + -0.3
863,430 - +0.1
863,430 - +0.0
863,430 - +0.3
863,507 + +0.3
863,507 + +0.4
863,778 - Xcc-8004.919.1 0.28 -0.1
863,999 - Xcc-8004.919.1 0.43 -0.3
864,032 + Xcc-8004.919.1 0.46 +0.1
864,033 - Xcc-8004.919.1 0.46 +0.6
864,033 - Xcc-8004.919.1 0.46 -1.3
864,119 + Xcc-8004.919.1 0.52 -1.1
864,119 + Xcc-8004.919.1 0.52 -0.3
864,120 - Xcc-8004.919.1 0.52 +0.0
864,182 + Xcc-8004.919.1 0.56 +0.2
864,182 + Xcc-8004.919.1 0.56 -1.2
864,182 + Xcc-8004.919.1 0.56 +0.1
864,183 - Xcc-8004.919.1 0.56 -0.2
864,183 - Xcc-8004.919.1 0.56 -1.5
864,183 - Xcc-8004.919.1 0.56 -1.8
864,183 - Xcc-8004.919.1 0.56 -0.1
864,183 - Xcc-8004.919.1 0.56 -0.2
864,356 + Xcc-8004.919.1 0.69 -0.1
864,356 + Xcc-8004.919.1 0.69 +0.3
864,357 - Xcc-8004.919.1 0.69 -0.1
864,357 - Xcc-8004.919.1 0.69 +0.8
864,450 - Xcc-8004.919.1 0.75 -0.2
864,572 + Xcc-8004.919.1 0.84 +0.2
864,572 + Xcc-8004.919.1 0.84 +0.1
864,572 + Xcc-8004.919.1 0.84 +0.7
864,572 + Xcc-8004.919.1 0.84 -0.7
864,573 - Xcc-8004.919.1 0.84 -0.7
864,573 - Xcc-8004.919.1 0.84 -1.2
864,666 + +0.0
864,667 - -0.2
864,800 - -0.2
864,800 - +0.8
864,800 - -0.9
864,800 - -0.5
864,999 + Xcc-8004.921.1 0.20 +1.4
865,104 + Xcc-8004.921.1 0.29 -0.1
865,105 - Xcc-8004.921.1 0.29 -0.6
865,266 + Xcc-8004.921.1 0.43 -1.2
865,267 - Xcc-8004.921.1 0.43 -0.0
865,267 - Xcc-8004.921.1 0.43 -0.8
865,267 - Xcc-8004.921.1 0.43 -0.8
865,534 - Xcc-8004.921.1 0.66 +0.6
865,619 + Xcc-8004.921.1 0.74 -0.6
865,629 + Xcc-8004.921.1 0.75 +0.2
865,629 + Xcc-8004.921.1 0.75 +0.2
865,630 - Xcc-8004.921.1 0.75 -0.2
865,630 - Xcc-8004.921.1 0.75 -0.2
865,630 - Xcc-8004.921.1 0.75 +0.6
865,728 + Xcc-8004.921.1 0.83 -0.5
865,728 + Xcc-8004.921.1 0.83 +0.2
865,729 - Xcc-8004.921.1 0.83 -0.6
865,731 + Xcc-8004.921.1 0.84 +0.4
865,731 + Xcc-8004.921.1 0.84 -0.3
865,731 + Xcc-8004.921.1 0.84 -0.6
865,732 - Xcc-8004.921.1 0.84 +1.6
865,732 - Xcc-8004.921.1 0.84 +0.1
865,732 - Xcc-8004.921.1 0.84 +0.4
865,795 - Xcc-8004.921.1 0.89 -0.6

Or see this region's nucleotide sequence