Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.918.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.917.1 and Xcc-8004.918.1 are separated by 181 nucleotidesXcc-8004.918.1 and Xcc-8004.919.1 are separated by 59 nucleotides Xcc-8004.917.1: Xcc-8004.917.1 - FIG01209954: hypothetical protein, at 861,227 to 862,093 Xcc-8004.917.1 Xcc-8004.918.1: Xcc-8004.918.1 - Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13), at 862,275 to 863,330 Xcc-8004.918.1 Xcc-8004.919.1: Xcc-8004.919.1 - Nicotinamide phosphoribosyltransferase (EC 2.4.2.12), at 863,390 to 864,796 Xcc-8004.919.1 Position (kb) 862 863 864Strain fitness (log2 ratio) -2 -1 0 1at 861.406 kb on + strand, within Xcc-8004.917.1at 861.407 kb on - strand, within Xcc-8004.917.1at 861.453 kb on + strand, within Xcc-8004.917.1at 861.453 kb on + strand, within Xcc-8004.917.1at 861.453 kb on + strand, within Xcc-8004.917.1at 861.453 kb on + strand, within Xcc-8004.917.1at 861.454 kb on - strand, within Xcc-8004.917.1at 861.606 kb on + strand, within Xcc-8004.917.1at 861.606 kb on + strand, within Xcc-8004.917.1at 861.607 kb on - strand, within Xcc-8004.917.1at 861.607 kb on - strand, within Xcc-8004.917.1at 861.607 kb on - strand, within Xcc-8004.917.1at 861.757 kb on - strand, within Xcc-8004.917.1at 861.757 kb on - strand, within Xcc-8004.917.1at 861.816 kb on + strand, within Xcc-8004.917.1at 861.817 kb on - strand, within Xcc-8004.917.1at 861.820 kb on + strand, within Xcc-8004.917.1at 861.820 kb on + strand, within Xcc-8004.917.1at 861.820 kb on + strand, within Xcc-8004.917.1at 861.820 kb on + strand, within Xcc-8004.917.1at 861.821 kb on - strand, within Xcc-8004.917.1at 861.821 kb on - strand, within Xcc-8004.917.1at 861.821 kb on - strand, within Xcc-8004.917.1at 861.821 kb on - strand, within Xcc-8004.917.1at 861.821 kb on - strand, within Xcc-8004.917.1at 861.952 kb on + strand, within Xcc-8004.917.1at 862.129 kb on + strandat 862.129 kb on + strandat 862.214 kb on - strandat 862.214 kb on - strandat 862.214 kb on - strandat 862.214 kb on - strandat 862.288 kb on - strandat 862.293 kb on + strandat 862.294 kb on - strandat 862.294 kb on - strandat 862.328 kb on + strandat 862.329 kb on - strandat 862.518 kb on + strand, within Xcc-8004.918.1at 862.518 kb on + strand, within Xcc-8004.918.1at 862.519 kb on - strand, within Xcc-8004.918.1at 862.519 kb on - strand, within Xcc-8004.918.1at 862.519 kb on - strand, within Xcc-8004.918.1at 862.639 kb on - strand, within Xcc-8004.918.1at 862.639 kb on - strand, within Xcc-8004.918.1at 862.639 kb on - strand, within Xcc-8004.918.1at 862.639 kb on - strand, within Xcc-8004.918.1at 862.641 kb on + strand, within Xcc-8004.918.1at 862.719 kb on + strand, within Xcc-8004.918.1at 862.720 kb on - strand, within Xcc-8004.918.1at 862.794 kb on + strand, within Xcc-8004.918.1at 862.794 kb on + strand, within Xcc-8004.918.1at 862.794 kb on + strand, within Xcc-8004.918.1at 862.795 kb on - strand, within Xcc-8004.918.1at 862.833 kb on + strand, within Xcc-8004.918.1at 862.833 kb on + strand, within Xcc-8004.918.1at 862.834 kb on - strand, within Xcc-8004.918.1at 862.834 kb on - strand, within Xcc-8004.918.1at 862.872 kb on + strand, within Xcc-8004.918.1at 862.899 kb on + strand, within Xcc-8004.918.1at 863.284 kb on - strandat 863.396 kb on + strandat 863.396 kb on + strandat 863.396 kb on + strandat 863.429 kb on + strandat 863.429 kb on + strandat 863.430 kb on - strandat 863.430 kb on - strandat 863.430 kb on - strandat 863.507 kb on + strandat 863.507 kb on + strandat 863.778 kb on - strand, within Xcc-8004.919.1at 863.999 kb on - strand, within Xcc-8004.919.1at 864.032 kb on + strand, within Xcc-8004.919.1at 864.033 kb on - strand, within Xcc-8004.919.1at 864.033 kb on - strand, within Xcc-8004.919.1at 864.119 kb on + strand, within Xcc-8004.919.1at 864.119 kb on + strand, within Xcc-8004.919.1at 864.120 kb on - strand, within Xcc-8004.919.1at 864.182 kb on + strand, within Xcc-8004.919.1at 864.182 kb on + strand, within Xcc-8004.919.1at 864.182 kb on + strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1at 864.183 kb on - strand, within Xcc-8004.919.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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861,406 + Xcc-8004.917.1 0.21 -1.0
861,407 - Xcc-8004.917.1 0.21 -1.5
861,453 + Xcc-8004.917.1 0.26 +1.1
861,453 + Xcc-8004.917.1 0.26 +0.2
861,453 + Xcc-8004.917.1 0.26 +1.5
861,453 + Xcc-8004.917.1 0.26 +0.1
861,454 - Xcc-8004.917.1 0.26 -0.8
861,606 + Xcc-8004.917.1 0.44 +0.2
861,606 + Xcc-8004.917.1 0.44 -1.6
861,607 - Xcc-8004.917.1 0.44 +0.2
861,607 - Xcc-8004.917.1 0.44 +0.0
861,607 - Xcc-8004.917.1 0.44 +0.6
861,757 - Xcc-8004.917.1 0.61 -0.3
861,757 - Xcc-8004.917.1 0.61 -1.7
861,816 + Xcc-8004.917.1 0.68 -0.3
861,817 - Xcc-8004.917.1 0.68 +0.1
861,820 + Xcc-8004.917.1 0.68 -1.7
861,820 + Xcc-8004.917.1 0.68 +0.1
861,820 + Xcc-8004.917.1 0.68 -0.6
861,820 + Xcc-8004.917.1 0.68 +0.3
861,821 - Xcc-8004.917.1 0.69 +0.2
861,821 - Xcc-8004.917.1 0.69 -0.1
861,821 - Xcc-8004.917.1 0.69 -0.5
861,821 - Xcc-8004.917.1 0.69 -0.5
861,821 - Xcc-8004.917.1 0.69 -2.0
861,952 + Xcc-8004.917.1 0.84 +0.5
862,129 + -0.1
862,129 + -0.3
862,214 - -0.2
862,214 - -0.6
862,214 - +0.2
862,214 - -0.8
862,288 - -0.7
862,293 + -1.5
862,294 - -0.1
862,294 - -0.4
862,328 + +0.7
862,329 - -2.0
862,518 + Xcc-8004.918.1 0.23 -0.3
862,518 + Xcc-8004.918.1 0.23 +0.4
862,519 - Xcc-8004.918.1 0.23 +1.2
862,519 - Xcc-8004.918.1 0.23 +0.5
862,519 - Xcc-8004.918.1 0.23 +1.0
862,639 - Xcc-8004.918.1 0.34 -0.5
862,639 - Xcc-8004.918.1 0.34 -0.6
862,639 - Xcc-8004.918.1 0.34 -0.4
862,639 - Xcc-8004.918.1 0.34 -1.3
862,641 + Xcc-8004.918.1 0.35 -0.3
862,719 + Xcc-8004.918.1 0.42 -0.5
862,720 - Xcc-8004.918.1 0.42 +0.1
862,794 + Xcc-8004.918.1 0.49 -0.8
862,794 + Xcc-8004.918.1 0.49 -0.3
862,794 + Xcc-8004.918.1 0.49 -0.2
862,795 - Xcc-8004.918.1 0.49 +0.7
862,833 + Xcc-8004.918.1 0.53 -0.7
862,833 + Xcc-8004.918.1 0.53 -2.1
862,834 - Xcc-8004.918.1 0.53 +1.2
862,834 - Xcc-8004.918.1 0.53 -0.2
862,872 + Xcc-8004.918.1 0.57 +0.1
862,899 + Xcc-8004.918.1 0.59 -1.5
863,284 - +1.1
863,396 + -0.4
863,396 + +0.9
863,396 + +0.1
863,429 + -0.4
863,429 + -0.3
863,430 - +0.1
863,430 - +0.0
863,430 - +0.3
863,507 + +0.3
863,507 + +0.4
863,778 - Xcc-8004.919.1 0.28 -0.1
863,999 - Xcc-8004.919.1 0.43 -0.3
864,032 + Xcc-8004.919.1 0.46 +0.1
864,033 - Xcc-8004.919.1 0.46 +0.6
864,033 - Xcc-8004.919.1 0.46 -1.3
864,119 + Xcc-8004.919.1 0.52 -1.1
864,119 + Xcc-8004.919.1 0.52 -0.3
864,120 - Xcc-8004.919.1 0.52 +0.0
864,182 + Xcc-8004.919.1 0.56 +0.2
864,182 + Xcc-8004.919.1 0.56 -1.2
864,182 + Xcc-8004.919.1 0.56 +0.1
864,183 - Xcc-8004.919.1 0.56 -0.2
864,183 - Xcc-8004.919.1 0.56 -1.5
864,183 - Xcc-8004.919.1 0.56 -1.8
864,183 - Xcc-8004.919.1 0.56 -0.1
864,183 - Xcc-8004.919.1 0.56 -0.2

Or see this region's nucleotide sequence