Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.654.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.652.1 and Xcc-8004.653.1 are separated by 67 nucleotidesXcc-8004.653.1 and Xcc-8004.654.1 are separated by 16 nucleotidesXcc-8004.654.1 and Xcc-8004.656.1 are separated by 311 nucleotides Xcc-8004.652.1: Xcc-8004.652.1 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 593,067 to 594,989 Xcc-8004.652.1 Xcc-8004.653.1: Xcc-8004.653.1 - Transcriptional regulator, LysR family, at 595,057 to 595,959 Xcc-8004.653.1 Xcc-8004.654.1: Xcc-8004.654.1 - MFS permease protein, at 595,976 to 597,250 Xcc-8004.654.1 Xcc-8004.656.1: Xcc-8004.656.1 - FIG01209718: hypothetical protein, at 597,562 to 599,805 Xcc-8004.656.1 Position (kb) 595 596 597 598Strain fitness (log2 ratio) -2 -1 0 1 2at 595.160 kb on + strand, within Xcc-8004.653.1at 595.160 kb on + strand, within Xcc-8004.653.1at 595.160 kb on + strand, within Xcc-8004.653.1at 595.161 kb on - strand, within Xcc-8004.653.1at 595.161 kb on - strand, within Xcc-8004.653.1at 595.161 kb on - strand, within Xcc-8004.653.1at 595.299 kb on - strand, within Xcc-8004.653.1at 595.299 kb on - strand, within Xcc-8004.653.1at 595.792 kb on + strand, within Xcc-8004.653.1at 595.996 kb on - strandat 596.107 kb on - strand, within Xcc-8004.654.1at 596.150 kb on + strand, within Xcc-8004.654.1at 596.150 kb on + strand, within Xcc-8004.654.1at 596.151 kb on - strand, within Xcc-8004.654.1at 596.151 kb on - strand, within Xcc-8004.654.1at 596.151 kb on - strand, within Xcc-8004.654.1at 596.151 kb on - strand, within Xcc-8004.654.1at 596.151 kb on - strand, within Xcc-8004.654.1at 596.154 kb on - strand, within Xcc-8004.654.1at 596.567 kb on + strand, within Xcc-8004.654.1at 596.654 kb on + strand, within Xcc-8004.654.1at 596.801 kb on + strand, within Xcc-8004.654.1at 596.802 kb on - strand, within Xcc-8004.654.1at 597.047 kb on + strand, within Xcc-8004.654.1at 597.047 kb on + strand, within Xcc-8004.654.1at 597.048 kb on - strand, within Xcc-8004.654.1at 597.089 kb on + strand, within Xcc-8004.654.1at 597.089 kb on + strand, within Xcc-8004.654.1at 597.089 kb on + strand, within Xcc-8004.654.1at 597.090 kb on - strand, within Xcc-8004.654.1at 597.090 kb on - strand, within Xcc-8004.654.1at 597.091 kb on + strand, within Xcc-8004.654.1at 597.091 kb on + strand, within Xcc-8004.654.1at 597.091 kb on + strand, within Xcc-8004.654.1at 597.092 kb on - strand, within Xcc-8004.654.1at 597.092 kb on - strand, within Xcc-8004.654.1at 597.092 kb on - strand, within Xcc-8004.654.1at 597.092 kb on - strand, within Xcc-8004.654.1at 597.101 kb on + strand, within Xcc-8004.654.1at 597.101 kb on + strand, within Xcc-8004.654.1at 597.101 kb on + strand, within Xcc-8004.654.1at 597.101 kb on + strand, within Xcc-8004.654.1at 597.102 kb on - strand, within Xcc-8004.654.1at 597.102 kb on - strand, within Xcc-8004.654.1at 597.102 kb on - strand, within Xcc-8004.654.1at 597.315 kb on + strandat 597.315 kb on + strandat 597.315 kb on + strandat 597.315 kb on + strandat 597.323 kb on + strandat 597.323 kb on + strandat 597.382 kb on + strandat 597.382 kb on + strandat 597.383 kb on - strandat 597.395 kb on - strandat 597.556 kb on + strandat 597.563 kb on + strandat 597.563 kb on + strandat 597.697 kb on + strandat 597.697 kb on + strandat 597.697 kb on + strandat 597.698 kb on - strandat 597.698 kb on - strandat 597.818 kb on + strand, within Xcc-8004.656.1at 597.880 kb on + strand, within Xcc-8004.656.1at 597.881 kb on - strand, within Xcc-8004.656.1at 597.881 kb on - strand, within Xcc-8004.656.1at 597.893 kb on + strand, within Xcc-8004.656.1at 597.893 kb on + strand, within Xcc-8004.656.1at 598.067 kb on + strand, within Xcc-8004.656.1at 598.068 kb on - strand, within Xcc-8004.656.1at 598.068 kb on - strand, within Xcc-8004.656.1at 598.068 kb on - strand, within Xcc-8004.656.1at 598.078 kb on + strand, within Xcc-8004.656.1at 598.078 kb on + strand, within Xcc-8004.656.1at 598.079 kb on - strand, within Xcc-8004.656.1at 598.079 kb on - strand, within Xcc-8004.656.1at 598.091 kb on + strand, within Xcc-8004.656.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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595,160 + Xcc-8004.653.1 0.11 -2.6
595,160 + Xcc-8004.653.1 0.11 +0.2
595,160 + Xcc-8004.653.1 0.11 -0.5
595,161 - Xcc-8004.653.1 0.12 +0.7
595,161 - Xcc-8004.653.1 0.12 -0.3
595,161 - Xcc-8004.653.1 0.12 -0.1
595,299 - Xcc-8004.653.1 0.27 -0.5
595,299 - Xcc-8004.653.1 0.27 -0.5
595,792 + Xcc-8004.653.1 0.81 -0.9
595,996 - +0.1
596,107 - Xcc-8004.654.1 0.10 +1.0
596,150 + Xcc-8004.654.1 0.14 +0.4
596,150 + Xcc-8004.654.1 0.14 -0.7
596,151 - Xcc-8004.654.1 0.14 +1.1
596,151 - Xcc-8004.654.1 0.14 -1.5
596,151 - Xcc-8004.654.1 0.14 +0.2
596,151 - Xcc-8004.654.1 0.14 -0.4
596,151 - Xcc-8004.654.1 0.14 -0.2
596,154 - Xcc-8004.654.1 0.14 +0.5
596,567 + Xcc-8004.654.1 0.46 +0.5
596,654 + Xcc-8004.654.1 0.53 +0.7
596,801 + Xcc-8004.654.1 0.65 -0.0
596,802 - Xcc-8004.654.1 0.65 +0.0
597,047 + Xcc-8004.654.1 0.84 +0.4
597,047 + Xcc-8004.654.1 0.84 -1.3
597,048 - Xcc-8004.654.1 0.84 -0.6
597,089 + Xcc-8004.654.1 0.87 +1.0
597,089 + Xcc-8004.654.1 0.87 -0.5
597,089 + Xcc-8004.654.1 0.87 +0.1
597,090 - Xcc-8004.654.1 0.87 -0.5
597,090 - Xcc-8004.654.1 0.87 -0.7
597,091 + Xcc-8004.654.1 0.87 -0.8
597,091 + Xcc-8004.654.1 0.87 -0.9
597,091 + Xcc-8004.654.1 0.87 +1.6
597,092 - Xcc-8004.654.1 0.88 -0.2
597,092 - Xcc-8004.654.1 0.88 +0.0
597,092 - Xcc-8004.654.1 0.88 +0.0
597,092 - Xcc-8004.654.1 0.88 +0.4
597,101 + Xcc-8004.654.1 0.88 +0.7
597,101 + Xcc-8004.654.1 0.88 +0.1
597,101 + Xcc-8004.654.1 0.88 -0.1
597,101 + Xcc-8004.654.1 0.88 -1.3
597,102 - Xcc-8004.654.1 0.88 +1.8
597,102 - Xcc-8004.654.1 0.88 +0.4
597,102 - Xcc-8004.654.1 0.88 -0.3
597,315 + -1.2
597,315 + -0.4
597,315 + +0.3
597,315 + -0.1
597,323 + -0.9
597,323 + -0.6
597,382 + +0.4
597,382 + +0.1
597,383 - -0.3
597,395 - -1.1
597,556 + +0.1
597,563 + -0.1
597,563 + +0.6
597,697 + +0.3
597,697 + -1.9
597,697 + +0.9
597,698 - -0.4
597,698 - +0.2
597,818 + Xcc-8004.656.1 0.11 -0.4
597,880 + Xcc-8004.656.1 0.14 -1.1
597,881 - Xcc-8004.656.1 0.14 +0.6
597,881 - Xcc-8004.656.1 0.14 +0.4
597,893 + Xcc-8004.656.1 0.15 +0.4
597,893 + Xcc-8004.656.1 0.15 +0.2
598,067 + Xcc-8004.656.1 0.23 +1.4
598,068 - Xcc-8004.656.1 0.23 -1.4
598,068 - Xcc-8004.656.1 0.23 +0.7
598,068 - Xcc-8004.656.1 0.23 -1.4
598,078 + Xcc-8004.656.1 0.23 +0.8
598,078 + Xcc-8004.656.1 0.23 -0.0
598,079 - Xcc-8004.656.1 0.23 +2.2
598,079 - Xcc-8004.656.1 0.23 -0.6
598,091 + Xcc-8004.656.1 0.24 -0.4

Or see this region's nucleotide sequence