Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4917.1 and Xcc-8004.4918.1 are separated by 10 nucleotides Xcc-8004.4918.1 and Xcc-8004.4919.1 are separated by 381 nucleotides Xcc-8004.4919.1 and Xcc-8004.4921.1 are separated by 71 nucleotides Xcc-8004.4921.1 and Xcc-8004.4920.1 are separated by 357 nucleotides
Xcc-8004.4917.1: Xcc-8004.4917.1 - outer membrane lipoprotein Blc, at 4,678,144 to 4,678,701
Xcc-8004.4917.1
Xcc-8004.4918.1: Xcc-8004.4918.1 - FIG01211357: hypothetical protein, at 4,678,712 to 4,678,888
Xcc-8004.4918.1
Xcc-8004.4919.1: Xcc-8004.4919.1 - FIG01210508: hypothetical protein, at 4,679,270 to 4,680,829
Xcc-8004.4919.1
Xcc-8004.4921.1: Xcc-8004.4921.1 - FIG01213962: hypothetical protein, at 4,680,901 to 4,681,134
Xcc-8004.4921.1
Xcc-8004.4920.1: Xcc-8004.4920.1 - POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE), at 4,681,492 to 4,682,613
Xcc-8004.4920.1
Position (kb) 4679
4680
4681 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.321 kb on + strand, within Xcc-8004.4917.1 at 4678.492 kb on + strand, within Xcc-8004.4917.1 at 4678.493 kb on - strand, within Xcc-8004.4917.1 at 4678.519 kb on + strand, within Xcc-8004.4917.1 at 4678.519 kb on + strand, within Xcc-8004.4917.1 at 4678.519 kb on + strand, within Xcc-8004.4917.1 at 4678.520 kb on - strand, within Xcc-8004.4917.1 at 4678.555 kb on + strand, within Xcc-8004.4917.1 at 4678.555 kb on + strand, within Xcc-8004.4917.1 at 4678.555 kb on + strand, within Xcc-8004.4917.1 at 4678.556 kb on - strand, within Xcc-8004.4917.1 at 4678.556 kb on - strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.610 kb on - strand, within Xcc-8004.4917.1 at 4678.610 kb on - strand, within Xcc-8004.4917.1 at 4678.610 kb on - strand, within Xcc-8004.4917.1 at 4678.668 kb on + strand at 4678.668 kb on + strand at 4678.713 kb on + strand at 4678.713 kb on + strand at 4678.713 kb on + strand at 4678.713 kb on + strand at 4678.714 kb on - strand at 4678.714 kb on - strand at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.965 kb on - strand at 4678.995 kb on + strand at 4678.995 kb on + strand at 4678.995 kb on + strand at 4678.996 kb on - strand at 4679.041 kb on - strand at 4679.092 kb on + strand at 4679.093 kb on - strand at 4679.093 kb on - strand at 4679.093 kb on - strand at 4679.093 kb on - strand at 4679.093 kb on - strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.173 kb on - strand at 4679.173 kb on - strand at 4679.173 kb on - strand at 4679.173 kb on - strand at 4679.345 kb on + strand at 4679.345 kb on + strand at 4679.346 kb on - strand at 4679.346 kb on - strand at 4679.346 kb on - strand at 4679.346 kb on - strand at 4679.346 kb on - strand at 4679.348 kb on + strand at 4679.349 kb on - strand at 4679.349 kb on - strand at 4679.349 kb on - strand at 4679.723 kb on + strand, within Xcc-8004.4919.1 at 4679.723 kb on + strand, within Xcc-8004.4919.1 at 4679.723 kb on + strand, within Xcc-8004.4919.1 at 4679.723 kb on + strand, within Xcc-8004.4919.1 at 4679.724 kb on - strand, within Xcc-8004.4919.1 at 4679.724 kb on - strand, within Xcc-8004.4919.1 at 4679.724 kb on - strand, within Xcc-8004.4919.1 at 4679.724 kb on - strand, within Xcc-8004.4919.1 at 4679.957 kb on + strand, within Xcc-8004.4919.1 at 4679.957 kb on + strand, within Xcc-8004.4919.1 at 4679.958 kb on - strand, within Xcc-8004.4919.1 at 4680.119 kb on + strand, within Xcc-8004.4919.1 at 4680.120 kb on - strand, within Xcc-8004.4919.1 at 4680.120 kb on - strand, within Xcc-8004.4919.1 at 4680.432 kb on + strand, within Xcc-8004.4919.1 at 4680.458 kb on + strand, within Xcc-8004.4919.1 at 4680.554 kb on + strand, within Xcc-8004.4919.1 at 4680.554 kb on + strand, within Xcc-8004.4919.1 at 4680.554 kb on + strand, within Xcc-8004.4919.1 at 4680.722 kb on + strand at 4680.722 kb on + strand at 4680.722 kb on + strand at 4680.722 kb on + strand at 4680.723 kb on - strand at 4680.850 kb on + strand at 4680.850 kb on + strand at 4680.850 kb on + strand at 4680.850 kb on + strand at 4680.949 kb on + strand, within Xcc-8004.4921.1 at 4680.949 kb on + strand, within Xcc-8004.4921.1 at 4680.950 kb on - strand, within Xcc-8004.4921.1 at 4681.106 kb on - strand, within Xcc-8004.4921.1 at 4681.141 kb on + strand at 4681.141 kb on + strand at 4681.142 kb on - strand at 4681.147 kb on + strand at 4681.163 kb on + strand at 4681.180 kb on - strand at 4681.199 kb on + strand at 4681.199 kb on + strand at 4681.199 kb on + strand at 4681.199 kb on + strand at 4681.200 kb on - strand at 4681.234 kb on + strand at 4681.252 kb on + strand at 4681.252 kb on + strand at 4681.253 kb on - strand at 4681.253 kb on - strand at 4681.373 kb on + strand at 4681.374 kb on - strand at 4681.374 kb on - strand at 4681.374 kb on - strand at 4681.404 kb on - strand at 4681.526 kb on - strand at 4681.610 kb on + strand, within Xcc-8004.4920.1 at 4681.610 kb on + strand, within Xcc-8004.4920.1 at 4681.610 kb on + strand, within Xcc-8004.4920.1 at 4681.611 kb on - strand, within Xcc-8004.4920.1 at 4681.611 kb on - strand, within Xcc-8004.4920.1 at 4681.664 kb on + strand, within Xcc-8004.4920.1 at 4681.689 kb on - strand, within Xcc-8004.4920.1 at 4681.689 kb on - strand, within Xcc-8004.4920.1 at 4681.784 kb on + strand, within Xcc-8004.4920.1 at 4681.785 kb on - strand, within Xcc-8004.4920.1 at 4681.785 kb on - strand, within Xcc-8004.4920.1 at 4681.785 kb on - strand, within Xcc-8004.4920.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 4,678,310 + Xcc-8004.4917.1 0.30 -0.3 4,678,310 + Xcc-8004.4917.1 0.30 +0.7 4,678,310 + Xcc-8004.4917.1 0.30 -1.4 4,678,310 + Xcc-8004.4917.1 0.30 -0.2 4,678,310 + Xcc-8004.4917.1 0.30 +0.4 4,678,310 + Xcc-8004.4917.1 0.30 -0.7 4,678,311 - Xcc-8004.4917.1 0.30 +0.4 4,678,311 - Xcc-8004.4917.1 0.30 -1.2 4,678,311 - Xcc-8004.4917.1 0.30 -1.0 4,678,311 - Xcc-8004.4917.1 0.30 +0.4 4,678,321 + Xcc-8004.4917.1 0.32 -1.2 4,678,492 + Xcc-8004.4917.1 0.62 +0.4 4,678,493 - Xcc-8004.4917.1 0.63 -0.6 4,678,519 + Xcc-8004.4917.1 0.67 +0.0 4,678,519 + Xcc-8004.4917.1 0.67 +0.4 4,678,519 + Xcc-8004.4917.1 0.67 +0.0 4,678,520 - Xcc-8004.4917.1 0.67 +0.1 4,678,555 + Xcc-8004.4917.1 0.74 -1.0 4,678,555 + Xcc-8004.4917.1 0.74 -0.2 4,678,555 + Xcc-8004.4917.1 0.74 +1.1 4,678,556 - Xcc-8004.4917.1 0.74 -1.0 4,678,556 - Xcc-8004.4917.1 0.74 +0.6 4,678,609 + Xcc-8004.4917.1 0.83 -0.9 4,678,609 + Xcc-8004.4917.1 0.83 -0.3 4,678,609 + Xcc-8004.4917.1 0.83 -0.6 4,678,609 + Xcc-8004.4917.1 0.83 +0.1 4,678,609 + Xcc-8004.4917.1 0.83 -0.0 4,678,609 + Xcc-8004.4917.1 0.83 +1.4 4,678,609 + Xcc-8004.4917.1 0.83 -0.1 4,678,609 + Xcc-8004.4917.1 0.83 +0.0 4,678,609 + Xcc-8004.4917.1 0.83 +0.6 4,678,610 - Xcc-8004.4917.1 0.84 -1.5 4,678,610 - Xcc-8004.4917.1 0.84 +0.6 4,678,610 - Xcc-8004.4917.1 0.84 +0.2 4,678,668 + +1.2 4,678,668 + -1.0 4,678,713 + +0.3 4,678,713 + +0.1 4,678,713 + -0.4 4,678,713 + -0.3 4,678,714 - +1.4 4,678,714 - +0.8 4,678,797 + Xcc-8004.4918.1 0.48 +0.9 4,678,797 + Xcc-8004.4918.1 0.48 -0.2 4,678,797 + Xcc-8004.4918.1 0.48 +0.0 4,678,797 + Xcc-8004.4918.1 0.48 -0.0 4,678,797 + Xcc-8004.4918.1 0.48 -0.1 4,678,797 + Xcc-8004.4918.1 0.48 -0.2 4,678,797 + Xcc-8004.4918.1 0.48 +0.1 4,678,797 + Xcc-8004.4918.1 0.48 +0.4 4,678,797 + Xcc-8004.4918.1 0.48 -0.3 4,678,797 + Xcc-8004.4918.1 0.48 +0.5 4,678,798 - Xcc-8004.4918.1 0.49 +0.5 4,678,798 - Xcc-8004.4918.1 0.49 +0.7 4,678,798 - Xcc-8004.4918.1 0.49 -0.9 4,678,798 - Xcc-8004.4918.1 0.49 +0.4 4,678,798 - Xcc-8004.4918.1 0.49 -1.1 4,678,798 - Xcc-8004.4918.1 0.49 +0.2 4,678,798 - Xcc-8004.4918.1 0.49 -0.1 4,678,798 - Xcc-8004.4918.1 0.49 -0.4 4,678,798 - Xcc-8004.4918.1 0.49 +0.9 4,678,798 - Xcc-8004.4918.1 0.49 -1.3 4,678,798 - Xcc-8004.4918.1 0.49 +0.1 4,678,965 - -0.4 4,678,995 + +0.4 4,678,995 + -0.9 4,678,995 + +0.4 4,678,996 - -0.6 4,679,041 - +0.2 4,679,092 + -1.9 4,679,093 - -0.6 4,679,093 - -0.5 4,679,093 - +0.4 4,679,093 - +0.3 4,679,093 - -0.2 4,679,172 + +0.1 4,679,172 + -0.1 4,679,172 + -0.8 4,679,172 + +1.2 4,679,172 + -0.2 4,679,172 + +0.2 4,679,172 + -0.1 4,679,172 + +0.2 4,679,173 - -0.0 4,679,173 - +0.6 4,679,173 - -0.1 4,679,173 - +0.3 4,679,345 + +0.2 4,679,345 + +2.0 4,679,346 - +0.4 4,679,346 - -0.7 4,679,346 - +0.3 4,679,346 - -0.6 4,679,346 - +0.1 4,679,348 + +0.5 4,679,349 - -0.1 4,679,349 - -0.6 4,679,349 - +0.0 4,679,723 + Xcc-8004.4919.1 0.29 +0.5 4,679,723 + Xcc-8004.4919.1 0.29 -0.6 4,679,723 + Xcc-8004.4919.1 0.29 +1.1 4,679,723 + Xcc-8004.4919.1 0.29 -0.4 4,679,724 - Xcc-8004.4919.1 0.29 -0.9 4,679,724 - Xcc-8004.4919.1 0.29 +1.1 4,679,724 - Xcc-8004.4919.1 0.29 -0.1 4,679,724 - Xcc-8004.4919.1 0.29 -0.9 4,679,957 + Xcc-8004.4919.1 0.44 +0.1 4,679,957 + Xcc-8004.4919.1 0.44 -0.0 4,679,958 - Xcc-8004.4919.1 0.44 -0.1 4,680,119 + Xcc-8004.4919.1 0.54 +0.1 4,680,120 - Xcc-8004.4919.1 0.54 -0.8 4,680,120 - Xcc-8004.4919.1 0.54 +0.1 4,680,432 + Xcc-8004.4919.1 0.74 +0.5 4,680,458 + Xcc-8004.4919.1 0.76 -0.7 4,680,554 + Xcc-8004.4919.1 0.82 +0.6 4,680,554 + Xcc-8004.4919.1 0.82 -0.7 4,680,554 + Xcc-8004.4919.1 0.82 -0.7 4,680,722 + -0.6 4,680,722 + +0.3 4,680,722 + -0.3 4,680,722 + +0.1 4,680,723 - +0.1 4,680,850 + +0.8 4,680,850 + +0.0 4,680,850 + +0.6 4,680,850 + +0.2 4,680,949 + Xcc-8004.4921.1 0.21 -1.7 4,680,949 + Xcc-8004.4921.1 0.21 -1.1 4,680,950 - Xcc-8004.4921.1 0.21 -0.2 4,681,106 - Xcc-8004.4921.1 0.88 -0.4 4,681,141 + -0.1 4,681,141 + -0.4 4,681,142 - -0.6 4,681,147 + -0.5 4,681,163 + -0.1 4,681,180 - -0.1 4,681,199 + -0.3 4,681,199 + +0.2 4,681,199 + -0.2 4,681,199 + -0.4 4,681,200 - +0.5 4,681,234 + +0.0 4,681,252 + -0.0 4,681,252 + -0.4 4,681,253 - +0.2 4,681,253 - +0.5 4,681,373 + -0.4 4,681,374 - -0.6 4,681,374 - -1.4 4,681,374 - -1.2 4,681,404 - +0.7 4,681,526 - +0.5 4,681,610 + Xcc-8004.4920.1 0.11 +0.5 4,681,610 + Xcc-8004.4920.1 0.11 -0.6 4,681,610 + Xcc-8004.4920.1 0.11 -1.8 4,681,611 - Xcc-8004.4920.1 0.11 -0.3 4,681,611 - Xcc-8004.4920.1 0.11 -0.7 4,681,664 + Xcc-8004.4920.1 0.15 -0.2 4,681,689 - Xcc-8004.4920.1 0.18 -1.6 4,681,689 - Xcc-8004.4920.1 0.18 -1.7 4,681,784 + Xcc-8004.4920.1 0.26 +1.1 4,681,785 - Xcc-8004.4920.1 0.26 -0.9 4,681,785 - Xcc-8004.4920.1 0.26 -1.0 4,681,785 - Xcc-8004.4920.1 0.26 +0.1
Or see this region's nucleotide sequence