Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3876.1 and Xcc-8004.3878.1 are separated by 483 nucleotides Xcc-8004.3878.1 and Xcc-8004.3879.1 are separated by 270 nucleotides Xcc-8004.3879.1 and Xcc-8004.3880.1 are separated by 68 nucleotides
Xcc-8004.3876.1: Xcc-8004.3876.1 - MFS transporter, at 3,743,773 to 3,745,026
Xcc-8004.3876.1
Xcc-8004.3878.1: Xcc-8004.3878.1 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 3,745,510 to 3,748,437
Xcc-8004.3878.1
Xcc-8004.3879.1: Xcc-8004.3879.1 - hypothetical protein, at 3,748,708 to 3,748,965
Xcc-8004.3879.1
Xcc-8004.3880.1: Xcc-8004.3880.1 - putative; ORF located using Glimmer/Genemark, at 3,749,034 to 3,749,450
Xcc-8004.3880.1
Position (kb) 3745
3746
3747
3748
3749 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3744.855 kb on - strand, within Xcc-8004.3876.1 at 3744.866 kb on + strand, within Xcc-8004.3876.1 at 3744.866 kb on + strand, within Xcc-8004.3876.1 at 3744.866 kb on + strand, within Xcc-8004.3876.1 at 3744.866 kb on + strand, within Xcc-8004.3876.1 at 3744.866 kb on + strand, within Xcc-8004.3876.1 at 3744.866 kb on + strand, within Xcc-8004.3876.1 at 3744.866 kb on + strand, within Xcc-8004.3876.1 at 3744.867 kb on - strand, within Xcc-8004.3876.1 at 3744.867 kb on - strand, within Xcc-8004.3876.1 at 3744.867 kb on - strand, within Xcc-8004.3876.1 at 3744.867 kb on - strand, within Xcc-8004.3876.1 at 3745.048 kb on - strand at 3745.048 kb on - strand at 3745.115 kb on + strand at 3745.115 kb on + strand at 3745.115 kb on + strand at 3745.115 kb on + strand at 3745.115 kb on + strand at 3745.115 kb on + strand at 3745.115 kb on + strand at 3745.115 kb on + strand at 3745.115 kb on + strand at 3745.115 kb on + strand at 3745.115 kb on + strand at 3745.115 kb on + strand at 3745.116 kb on - strand at 3745.116 kb on - strand at 3745.116 kb on - strand at 3745.116 kb on - strand at 3745.116 kb on - strand at 3745.207 kb on + strand at 3745.208 kb on - strand at 3745.208 kb on - strand at 3745.208 kb on - strand at 3745.208 kb on - strand at 3745.208 kb on - strand at 3745.209 kb on + strand at 3745.210 kb on - strand at 3745.220 kb on + strand at 3745.220 kb on + strand at 3745.221 kb on - strand at 3745.221 kb on - strand at 3745.221 kb on - strand at 3745.287 kb on + strand at 3745.287 kb on + strand at 3745.378 kb on + strand at 3745.378 kb on + strand at 3745.378 kb on + strand at 3745.378 kb on + strand at 3745.379 kb on - strand at 3745.445 kb on + strand at 3745.445 kb on + strand at 3745.446 kb on - strand at 3745.783 kb on + strand at 3745.784 kb on - strand at 3745.786 kb on + strand at 3745.787 kb on - strand at 3745.798 kb on - strand at 3745.798 kb on - strand at 3745.843 kb on + strand, within Xcc-8004.3878.1 at 3745.843 kb on + strand, within Xcc-8004.3878.1 at 3745.843 kb on + strand, within Xcc-8004.3878.1 at 3745.852 kb on + strand, within Xcc-8004.3878.1 at 3745.852 kb on + strand, within Xcc-8004.3878.1 at 3745.852 kb on + strand, within Xcc-8004.3878.1 at 3745.853 kb on - strand, within Xcc-8004.3878.1 at 3745.853 kb on - strand, within Xcc-8004.3878.1 at 3745.853 kb on - strand, within Xcc-8004.3878.1 at 3745.853 kb on - strand, within Xcc-8004.3878.1 at 3746.389 kb on + strand, within Xcc-8004.3878.1 at 3746.389 kb on + strand, within Xcc-8004.3878.1 at 3746.389 kb on + strand, within Xcc-8004.3878.1 at 3746.389 kb on + strand, within Xcc-8004.3878.1 at 3746.390 kb on - strand, within Xcc-8004.3878.1 at 3746.390 kb on - strand, within Xcc-8004.3878.1 at 3746.390 kb on - strand, within Xcc-8004.3878.1 at 3746.390 kb on - strand, within Xcc-8004.3878.1 at 3746.453 kb on - strand, within Xcc-8004.3878.1 at 3746.554 kb on + strand, within Xcc-8004.3878.1 at 3746.555 kb on - strand, within Xcc-8004.3878.1 at 3746.555 kb on - strand, within Xcc-8004.3878.1 at 3746.555 kb on - strand, within Xcc-8004.3878.1 at 3746.563 kb on + strand, within Xcc-8004.3878.1 at 3746.563 kb on + strand, within Xcc-8004.3878.1 at 3746.563 kb on + strand, within Xcc-8004.3878.1 at 3746.564 kb on - strand, within Xcc-8004.3878.1 at 3746.564 kb on - strand, within Xcc-8004.3878.1 at 3746.564 kb on - strand, within Xcc-8004.3878.1 at 3746.962 kb on + strand, within Xcc-8004.3878.1 at 3747.125 kb on - strand, within Xcc-8004.3878.1 at 3747.448 kb on + strand, within Xcc-8004.3878.1 at 3747.448 kb on + strand, within Xcc-8004.3878.1 at 3747.448 kb on + strand, within Xcc-8004.3878.1 at 3747.448 kb on + strand, within Xcc-8004.3878.1 at 3747.448 kb on + strand, within Xcc-8004.3878.1 at 3747.449 kb on - strand, within Xcc-8004.3878.1 at 3747.449 kb on - strand, within Xcc-8004.3878.1 at 3747.526 kb on + strand, within Xcc-8004.3878.1 at 3747.526 kb on + strand, within Xcc-8004.3878.1 at 3747.526 kb on + strand, within Xcc-8004.3878.1 at 3747.526 kb on + strand, within Xcc-8004.3878.1 at 3747.526 kb on + strand, within Xcc-8004.3878.1 at 3747.527 kb on - strand, within Xcc-8004.3878.1 at 3747.527 kb on - strand, within Xcc-8004.3878.1 at 3747.527 kb on - strand, within Xcc-8004.3878.1 at 3747.527 kb on - strand, within Xcc-8004.3878.1 at 3747.528 kb on + strand, within Xcc-8004.3878.1 at 3747.529 kb on - strand, within Xcc-8004.3878.1 at 3747.709 kb on - strand, within Xcc-8004.3878.1 at 3747.709 kb on - strand, within Xcc-8004.3878.1 at 3747.709 kb on - strand, within Xcc-8004.3878.1 at 3747.709 kb on - strand, within Xcc-8004.3878.1 at 3747.808 kb on + strand, within Xcc-8004.3878.1 at 3747.844 kb on + strand, within Xcc-8004.3878.1 at 3747.844 kb on + strand, within Xcc-8004.3878.1 at 3747.844 kb on + strand, within Xcc-8004.3878.1 at 3747.844 kb on + strand, within Xcc-8004.3878.1 at 3747.844 kb on + strand, within Xcc-8004.3878.1 at 3747.845 kb on - strand, within Xcc-8004.3878.1 at 3747.845 kb on - strand, within Xcc-8004.3878.1 at 3747.845 kb on - strand, within Xcc-8004.3878.1 at 3747.845 kb on - strand, within Xcc-8004.3878.1 at 3747.910 kb on + strand, within Xcc-8004.3878.1 at 3747.910 kb on + strand, within Xcc-8004.3878.1 at 3747.911 kb on - strand, within Xcc-8004.3878.1 at 3747.911 kb on - strand, within Xcc-8004.3878.1 at 3747.911 kb on - strand, within Xcc-8004.3878.1 at 3747.938 kb on - strand, within Xcc-8004.3878.1 at 3747.949 kb on + strand, within Xcc-8004.3878.1 at 3747.949 kb on + strand, within Xcc-8004.3878.1 at 3748.369 kb on + strand at 3748.398 kb on + strand at 3748.399 kb on - strand at 3748.414 kb on + strand at 3748.414 kb on + strand at 3748.415 kb on - strand at 3748.436 kb on - strand at 3748.436 kb on - strand at 3748.483 kb on - strand at 3748.483 kb on - strand at 3748.500 kb on + strand at 3748.500 kb on + strand at 3748.572 kb on + strand at 3748.573 kb on - strand at 3748.760 kb on + strand, within Xcc-8004.3879.1 at 3748.760 kb on + strand, within Xcc-8004.3879.1 at 3748.761 kb on - strand, within Xcc-8004.3879.1 at 3748.761 kb on - strand, within Xcc-8004.3879.1 at 3748.887 kb on + strand, within Xcc-8004.3879.1 at 3748.887 kb on + strand, within Xcc-8004.3879.1 at 3748.888 kb on - strand, within Xcc-8004.3879.1 at 3748.997 kb on + strand at 3748.997 kb on + strand at 3749.041 kb on + strand at 3749.052 kb on + strand at 3749.052 kb on + strand at 3749.052 kb on + strand at 3749.052 kb on + strand at 3749.053 kb on - strand at 3749.053 kb on - strand at 3749.053 kb on - strand at 3749.053 kb on - strand at 3749.053 kb on - strand at 3749.053 kb on - strand at 3749.053 kb on - strand at 3749.083 kb on - strand, within Xcc-8004.3880.1 at 3749.139 kb on + strand, within Xcc-8004.3880.1 at 3749.140 kb on - strand, within Xcc-8004.3880.1 at 3749.140 kb on - strand, within Xcc-8004.3880.1 at 3749.226 kb on + strand, within Xcc-8004.3880.1 at 3749.226 kb on + strand, within Xcc-8004.3880.1 at 3749.227 kb on - strand, within Xcc-8004.3880.1 at 3749.227 kb on - strand, within Xcc-8004.3880.1 at 3749.227 kb on - strand, within Xcc-8004.3880.1 at 3749.227 kb on - strand, within Xcc-8004.3880.1 at 3749.227 kb on - strand, within Xcc-8004.3880.1 at 3749.232 kb on + strand, within Xcc-8004.3880.1 at 3749.233 kb on - strand, within Xcc-8004.3880.1 at 3749.233 kb on - strand, within Xcc-8004.3880.1 at 3749.233 kb on - strand, within Xcc-8004.3880.1 at 3749.302 kb on - strand, within Xcc-8004.3880.1 at 3749.302 kb on - strand, within Xcc-8004.3880.1 at 3749.397 kb on + strand, within Xcc-8004.3880.1 at 3749.398 kb on - strand, within Xcc-8004.3880.1 at 3749.430 kb on - strand at 3749.430 kb on - strand at 3749.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 3,744,855 - Xcc-8004.3876.1 0.86 +1.3 3,744,866 + Xcc-8004.3876.1 0.87 -2.0 3,744,866 + Xcc-8004.3876.1 0.87 -1.1 3,744,866 + Xcc-8004.3876.1 0.87 -0.6 3,744,866 + Xcc-8004.3876.1 0.87 +0.7 3,744,866 + Xcc-8004.3876.1 0.87 -0.1 3,744,866 + Xcc-8004.3876.1 0.87 +0.5 3,744,866 + Xcc-8004.3876.1 0.87 -0.0 3,744,867 - Xcc-8004.3876.1 0.87 +0.1 3,744,867 - Xcc-8004.3876.1 0.87 -1.2 3,744,867 - Xcc-8004.3876.1 0.87 +0.1 3,744,867 - Xcc-8004.3876.1 0.87 -0.2 3,745,048 - +0.2 3,745,048 - -2.1 3,745,115 + +0.5 3,745,115 + +0.3 3,745,115 + -0.8 3,745,115 + +0.1 3,745,115 + +0.1 3,745,115 + +0.2 3,745,115 + -1.0 3,745,115 + +0.3 3,745,115 + -0.5 3,745,115 + +0.3 3,745,115 + +1.0 3,745,115 + -0.7 3,745,116 - -1.8 3,745,116 - -0.2 3,745,116 - -1.4 3,745,116 - -0.8 3,745,116 - -0.9 3,745,207 + +0.4 3,745,208 - +0.8 3,745,208 - -0.2 3,745,208 - -0.4 3,745,208 - +0.4 3,745,208 - +0.0 3,745,209 + -1.0 3,745,210 - -2.7 3,745,220 + +0.0 3,745,220 + +0.8 3,745,221 - -1.5 3,745,221 - -1.6 3,745,221 - -1.6 3,745,287 + -0.5 3,745,287 + -1.2 3,745,378 + -0.0 3,745,378 + +0.3 3,745,378 + -0.2 3,745,378 + +0.3 3,745,379 - +0.2 3,745,445 + +0.1 3,745,445 + -0.1 3,745,446 - -2.0 3,745,783 + -1.3 3,745,784 - -0.7 3,745,786 + -2.3 3,745,787 - -1.9 3,745,798 - -0.9 3,745,798 - -1.3 3,745,843 + Xcc-8004.3878.1 0.11 -2.6 3,745,843 + Xcc-8004.3878.1 0.11 -1.4 3,745,843 + Xcc-8004.3878.1 0.11 -1.5 3,745,852 + Xcc-8004.3878.1 0.12 -0.6 3,745,852 + Xcc-8004.3878.1 0.12 -1.3 3,745,852 + Xcc-8004.3878.1 0.12 -1.7 3,745,853 - Xcc-8004.3878.1 0.12 +0.2 3,745,853 - Xcc-8004.3878.1 0.12 -3.0 3,745,853 - Xcc-8004.3878.1 0.12 -1.3 3,745,853 - Xcc-8004.3878.1 0.12 -0.3 3,746,389 + Xcc-8004.3878.1 0.30 -1.1 3,746,389 + Xcc-8004.3878.1 0.30 -1.0 3,746,389 + Xcc-8004.3878.1 0.30 -2.6 3,746,389 + Xcc-8004.3878.1 0.30 -2.7 3,746,390 - Xcc-8004.3878.1 0.30 -2.6 3,746,390 - Xcc-8004.3878.1 0.30 -1.9 3,746,390 - Xcc-8004.3878.1 0.30 -2.9 3,746,390 - Xcc-8004.3878.1 0.30 -1.9 3,746,453 - Xcc-8004.3878.1 0.32 -2.2 3,746,554 + Xcc-8004.3878.1 0.36 -1.1 3,746,555 - Xcc-8004.3878.1 0.36 -1.0 3,746,555 - Xcc-8004.3878.1 0.36 -0.4 3,746,555 - Xcc-8004.3878.1 0.36 +0.3 3,746,563 + Xcc-8004.3878.1 0.36 -1.3 3,746,563 + Xcc-8004.3878.1 0.36 -1.4 3,746,563 + Xcc-8004.3878.1 0.36 +1.0 3,746,564 - Xcc-8004.3878.1 0.36 +0.1 3,746,564 - Xcc-8004.3878.1 0.36 -1.7 3,746,564 - Xcc-8004.3878.1 0.36 +0.2 3,746,962 + Xcc-8004.3878.1 0.50 -0.3 3,747,125 - Xcc-8004.3878.1 0.55 -0.5 3,747,448 + Xcc-8004.3878.1 0.66 -0.3 3,747,448 + Xcc-8004.3878.1 0.66 -3.2 3,747,448 + Xcc-8004.3878.1 0.66 -1.6 3,747,448 + Xcc-8004.3878.1 0.66 -3.1 3,747,448 + Xcc-8004.3878.1 0.66 -3.0 3,747,449 - Xcc-8004.3878.1 0.66 -1.6 3,747,449 - Xcc-8004.3878.1 0.66 -0.3 3,747,526 + Xcc-8004.3878.1 0.69 -1.0 3,747,526 + Xcc-8004.3878.1 0.69 -1.4 3,747,526 + Xcc-8004.3878.1 0.69 -0.6 3,747,526 + Xcc-8004.3878.1 0.69 +0.6 3,747,526 + Xcc-8004.3878.1 0.69 +0.2 3,747,527 - Xcc-8004.3878.1 0.69 -1.8 3,747,527 - Xcc-8004.3878.1 0.69 -3.1 3,747,527 - Xcc-8004.3878.1 0.69 -1.0 3,747,527 - Xcc-8004.3878.1 0.69 -0.4 3,747,528 + Xcc-8004.3878.1 0.69 -2.8 3,747,529 - Xcc-8004.3878.1 0.69 -1.3 3,747,709 - Xcc-8004.3878.1 0.75 -1.5 3,747,709 - Xcc-8004.3878.1 0.75 +0.0 3,747,709 - Xcc-8004.3878.1 0.75 -1.9 3,747,709 - Xcc-8004.3878.1 0.75 -0.3 3,747,808 + Xcc-8004.3878.1 0.78 -0.7 3,747,844 + Xcc-8004.3878.1 0.80 -0.4 3,747,844 + Xcc-8004.3878.1 0.80 -0.4 3,747,844 + Xcc-8004.3878.1 0.80 -1.0 3,747,844 + Xcc-8004.3878.1 0.80 -1.3 3,747,844 + Xcc-8004.3878.1 0.80 -1.3 3,747,845 - Xcc-8004.3878.1 0.80 -2.0 3,747,845 - Xcc-8004.3878.1 0.80 -0.9 3,747,845 - Xcc-8004.3878.1 0.80 -0.2 3,747,845 - Xcc-8004.3878.1 0.80 +0.9 3,747,910 + Xcc-8004.3878.1 0.82 -0.4 3,747,910 + Xcc-8004.3878.1 0.82 -0.7 3,747,911 - Xcc-8004.3878.1 0.82 -1.3 3,747,911 - Xcc-8004.3878.1 0.82 +0.1 3,747,911 - Xcc-8004.3878.1 0.82 -2.4 3,747,938 - Xcc-8004.3878.1 0.83 -1.2 3,747,949 + Xcc-8004.3878.1 0.83 +0.0 3,747,949 + Xcc-8004.3878.1 0.83 -1.7 3,748,369 + -0.9 3,748,398 + -1.0 3,748,399 - -1.3 3,748,414 + +0.4 3,748,414 + +0.0 3,748,415 - +0.3 3,748,436 - -0.3 3,748,436 - +0.5 3,748,483 - -0.0 3,748,483 - -0.3 3,748,500 + -0.5 3,748,500 + +0.1 3,748,572 + +0.0 3,748,573 - -0.1 3,748,760 + Xcc-8004.3879.1 0.20 +0.8 3,748,760 + Xcc-8004.3879.1 0.20 -0.7 3,748,761 - Xcc-8004.3879.1 0.21 -0.5 3,748,761 - Xcc-8004.3879.1 0.21 -0.2 3,748,887 + Xcc-8004.3879.1 0.69 -0.5 3,748,887 + Xcc-8004.3879.1 0.69 -0.4 3,748,888 - Xcc-8004.3879.1 0.70 -0.6 3,748,997 + -1.1 3,748,997 + +0.1 3,749,041 + +0.2 3,749,052 + -0.7 3,749,052 + -0.7 3,749,052 + +0.7 3,749,052 + -1.4 3,749,053 - +1.7 3,749,053 - +0.4 3,749,053 - +0.1 3,749,053 - +0.4 3,749,053 - +0.5 3,749,053 - +0.5 3,749,053 - -0.2 3,749,083 - Xcc-8004.3880.1 0.12 -0.8 3,749,139 + Xcc-8004.3880.1 0.25 -0.2 3,749,140 - Xcc-8004.3880.1 0.25 +0.3 3,749,140 - Xcc-8004.3880.1 0.25 +0.2 3,749,226 + Xcc-8004.3880.1 0.46 -0.4 3,749,226 + Xcc-8004.3880.1 0.46 -1.6 3,749,227 - Xcc-8004.3880.1 0.46 +0.5 3,749,227 - Xcc-8004.3880.1 0.46 +0.4 3,749,227 - Xcc-8004.3880.1 0.46 -0.5 3,749,227 - Xcc-8004.3880.1 0.46 +0.6 3,749,227 - Xcc-8004.3880.1 0.46 -1.1 3,749,232 + Xcc-8004.3880.1 0.47 -0.1 3,749,233 - Xcc-8004.3880.1 0.48 -0.7 3,749,233 - Xcc-8004.3880.1 0.48 -0.7 3,749,233 - Xcc-8004.3880.1 0.48 +0.7 3,749,302 - Xcc-8004.3880.1 0.64 +0.4 3,749,302 - Xcc-8004.3880.1 0.64 +0.3 3,749,397 + Xcc-8004.3880.1 0.87 +0.2 3,749,398 - Xcc-8004.3880.1 0.87 +0.7 3,749,430 - -0.3 3,749,430 - +0.0 3,749,430 - +1.9
Or see this region's nucleotide sequence