Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3666.1 and Xcc-8004.3667.1 are separated by 76 nucleotides Xcc-8004.3667.1 and Xcc-8004.3668.1 are separated by 123 nucleotides Xcc-8004.3668.1 and Xcc-8004.3669.1 are separated by 174 nucleotides
Xcc-8004.3666.1: Xcc-8004.3666.1 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 3,546,354 to 3,547,055
Xcc-8004.3666.1
Xcc-8004.3667.1: Xcc-8004.3667.1 - FIG01210304: hypothetical protein, at 3,547,132 to 3,547,596
Xcc-8004.3667.1
Xcc-8004.3668.1: Xcc-8004.3668.1 - putative; ORF located using Glimmer/Genemark, at 3,547,720 to 3,548,361
Xcc-8004.3668.1
Xcc-8004.3669.1: Xcc-8004.3669.1 - 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-), at 3,548,536 to 3,549,870
Xcc-8004.3669.1
Position (kb) 3547
3548
3549 Strain fitness (log2 ratio) -1
0
1
2 at 3546.759 kb on + strand, within Xcc-8004.3666.1 at 3546.759 kb on + strand, within Xcc-8004.3666.1 at 3546.759 kb on + strand, within Xcc-8004.3666.1 at 3546.759 kb on + strand, within Xcc-8004.3666.1 at 3546.759 kb on + strand, within Xcc-8004.3666.1 at 3546.759 kb on + strand, within Xcc-8004.3666.1 at 3546.760 kb on - strand, within Xcc-8004.3666.1 at 3546.837 kb on - strand, within Xcc-8004.3666.1 at 3546.925 kb on + strand, within Xcc-8004.3666.1 at 3546.926 kb on - strand, within Xcc-8004.3666.1 at 3547.081 kb on + strand at 3547.081 kb on + strand at 3547.082 kb on - strand at 3547.181 kb on + strand, within Xcc-8004.3667.1 at 3547.181 kb on + strand, within Xcc-8004.3667.1 at 3547.181 kb on + strand, within Xcc-8004.3667.1 at 3547.181 kb on + strand, within Xcc-8004.3667.1 at 3547.181 kb on + strand, within Xcc-8004.3667.1 at 3547.181 kb on + strand, within Xcc-8004.3667.1 at 3547.181 kb on + strand, within Xcc-8004.3667.1 at 3547.181 kb on + strand, within Xcc-8004.3667.1 at 3547.182 kb on - strand, within Xcc-8004.3667.1 at 3547.182 kb on - strand, within Xcc-8004.3667.1 at 3547.182 kb on - strand, within Xcc-8004.3667.1 at 3547.182 kb on - strand, within Xcc-8004.3667.1 at 3547.182 kb on - strand, within Xcc-8004.3667.1 at 3547.182 kb on - strand, within Xcc-8004.3667.1 at 3547.182 kb on - strand, within Xcc-8004.3667.1 at 3547.184 kb on + strand, within Xcc-8004.3667.1 at 3547.184 kb on + strand, within Xcc-8004.3667.1 at 3547.185 kb on - strand, within Xcc-8004.3667.1 at 3547.185 kb on - strand, within Xcc-8004.3667.1 at 3547.185 kb on - strand, within Xcc-8004.3667.1 at 3547.185 kb on - strand, within Xcc-8004.3667.1 at 3547.185 kb on - strand, within Xcc-8004.3667.1 at 3547.326 kb on - strand, within Xcc-8004.3667.1 at 3547.536 kb on + strand, within Xcc-8004.3667.1 at 3547.536 kb on + strand, within Xcc-8004.3667.1 at 3547.536 kb on + strand, within Xcc-8004.3667.1 at 3547.536 kb on + strand, within Xcc-8004.3667.1 at 3547.536 kb on + strand, within Xcc-8004.3667.1 at 3547.536 kb on + strand, within Xcc-8004.3667.1 at 3547.537 kb on - strand, within Xcc-8004.3667.1 at 3547.537 kb on - strand, within Xcc-8004.3667.1 at 3547.538 kb on + strand, within Xcc-8004.3667.1 at 3547.538 kb on + strand, within Xcc-8004.3667.1 at 3547.538 kb on + strand, within Xcc-8004.3667.1 at 3547.538 kb on + strand, within Xcc-8004.3667.1 at 3547.539 kb on - strand, within Xcc-8004.3667.1 at 3547.539 kb on - strand, within Xcc-8004.3667.1 at 3547.539 kb on - strand, within Xcc-8004.3667.1 at 3547.539 kb on - strand, within Xcc-8004.3667.1 at 3547.636 kb on + strand at 3547.636 kb on + strand at 3547.636 kb on + strand at 3547.637 kb on - strand at 3547.637 kb on - strand at 3547.637 kb on - strand at 3547.637 kb on - strand at 3547.637 kb on - strand at 3547.666 kb on + strand at 3547.666 kb on + strand at 3547.666 kb on + strand at 3547.667 kb on - strand at 3547.686 kb on + strand at 3547.686 kb on + strand at 3547.686 kb on + strand at 3547.687 kb on - strand at 3547.687 kb on - strand at 3547.687 kb on - strand at 3547.687 kb on - strand at 3547.928 kb on + strand, within Xcc-8004.3668.1 at 3547.928 kb on + strand, within Xcc-8004.3668.1 at 3547.928 kb on + strand, within Xcc-8004.3668.1 at 3547.928 kb on + strand, within Xcc-8004.3668.1 at 3547.929 kb on - strand, within Xcc-8004.3668.1 at 3548.373 kb on + strand at 3548.390 kb on + strand at 3548.391 kb on - strand at 3548.391 kb on - strand at 3548.484 kb on + strand at 3548.484 kb on + strand at 3548.484 kb on + strand at 3548.485 kb on - strand at 3548.681 kb on + strand, within Xcc-8004.3669.1 at 3548.681 kb on + strand, within Xcc-8004.3669.1 at 3548.681 kb on + strand, within Xcc-8004.3669.1 at 3548.681 kb on + strand, within Xcc-8004.3669.1 at 3548.681 kb on + strand, within Xcc-8004.3669.1 at 3548.681 kb on + strand, within Xcc-8004.3669.1 at 3548.682 kb on - strand, within Xcc-8004.3669.1 at 3548.822 kb on + strand, within Xcc-8004.3669.1 at 3548.822 kb on + strand, within Xcc-8004.3669.1 at 3548.822 kb on + strand, within Xcc-8004.3669.1 at 3548.823 kb on - strand, within Xcc-8004.3669.1 at 3548.920 kb on - strand, within Xcc-8004.3669.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 3,546,759 + Xcc-8004.3666.1 0.58 -0.3 3,546,759 + Xcc-8004.3666.1 0.58 -0.0 3,546,759 + Xcc-8004.3666.1 0.58 -0.2 3,546,759 + Xcc-8004.3666.1 0.58 -0.2 3,546,759 + Xcc-8004.3666.1 0.58 -0.7 3,546,759 + Xcc-8004.3666.1 0.58 -0.1 3,546,760 - Xcc-8004.3666.1 0.58 +0.0 3,546,837 - Xcc-8004.3666.1 0.69 +0.9 3,546,925 + Xcc-8004.3666.1 0.81 -1.2 3,546,926 - Xcc-8004.3666.1 0.81 +0.1 3,547,081 + -0.6 3,547,081 + -0.1 3,547,082 - +0.6 3,547,181 + Xcc-8004.3667.1 0.11 +0.5 3,547,181 + Xcc-8004.3667.1 0.11 +0.5 3,547,181 + Xcc-8004.3667.1 0.11 +0.3 3,547,181 + Xcc-8004.3667.1 0.11 +0.5 3,547,181 + Xcc-8004.3667.1 0.11 -0.2 3,547,181 + Xcc-8004.3667.1 0.11 +1.0 3,547,181 + Xcc-8004.3667.1 0.11 -0.6 3,547,181 + Xcc-8004.3667.1 0.11 +0.3 3,547,182 - Xcc-8004.3667.1 0.11 -1.4 3,547,182 - Xcc-8004.3667.1 0.11 -0.6 3,547,182 - Xcc-8004.3667.1 0.11 -0.2 3,547,182 - Xcc-8004.3667.1 0.11 -1.4 3,547,182 - Xcc-8004.3667.1 0.11 -0.5 3,547,182 - Xcc-8004.3667.1 0.11 +0.1 3,547,182 - Xcc-8004.3667.1 0.11 +0.8 3,547,184 + Xcc-8004.3667.1 0.11 +0.1 3,547,184 + Xcc-8004.3667.1 0.11 -0.9 3,547,185 - Xcc-8004.3667.1 0.11 +0.2 3,547,185 - Xcc-8004.3667.1 0.11 +1.5 3,547,185 - Xcc-8004.3667.1 0.11 -0.3 3,547,185 - Xcc-8004.3667.1 0.11 -0.6 3,547,185 - Xcc-8004.3667.1 0.11 -0.2 3,547,326 - Xcc-8004.3667.1 0.42 -1.4 3,547,536 + Xcc-8004.3667.1 0.87 +0.4 3,547,536 + Xcc-8004.3667.1 0.87 -1.0 3,547,536 + Xcc-8004.3667.1 0.87 -0.4 3,547,536 + Xcc-8004.3667.1 0.87 +0.3 3,547,536 + Xcc-8004.3667.1 0.87 -0.4 3,547,536 + Xcc-8004.3667.1 0.87 +0.9 3,547,537 - Xcc-8004.3667.1 0.87 -0.4 3,547,537 - Xcc-8004.3667.1 0.87 -0.5 3,547,538 + Xcc-8004.3667.1 0.87 -0.5 3,547,538 + Xcc-8004.3667.1 0.87 -1.2 3,547,538 + Xcc-8004.3667.1 0.87 -0.6 3,547,538 + Xcc-8004.3667.1 0.87 +0.4 3,547,539 - Xcc-8004.3667.1 0.88 -0.7 3,547,539 - Xcc-8004.3667.1 0.88 +0.5 3,547,539 - Xcc-8004.3667.1 0.88 -0.9 3,547,539 - Xcc-8004.3667.1 0.88 +0.3 3,547,636 + -0.5 3,547,636 + -0.2 3,547,636 + +0.0 3,547,637 - +0.1 3,547,637 - +0.8 3,547,637 - +0.8 3,547,637 - -0.8 3,547,637 - -0.1 3,547,666 + +1.9 3,547,666 + +1.6 3,547,666 + +0.7 3,547,667 - -0.7 3,547,686 + +0.8 3,547,686 + +0.2 3,547,686 + +1.3 3,547,687 - +1.1 3,547,687 - -1.0 3,547,687 - +0.4 3,547,687 - -1.0 3,547,928 + Xcc-8004.3668.1 0.32 -1.7 3,547,928 + Xcc-8004.3668.1 0.32 -0.6 3,547,928 + Xcc-8004.3668.1 0.32 +0.0 3,547,928 + Xcc-8004.3668.1 0.32 +0.6 3,547,929 - Xcc-8004.3668.1 0.33 -0.5 3,548,373 + -0.5 3,548,390 + +0.5 3,548,391 - +1.2 3,548,391 - -0.1 3,548,484 + +0.8 3,548,484 + +0.0 3,548,484 + -0.4 3,548,485 - +1.5 3,548,681 + Xcc-8004.3669.1 0.11 +0.4 3,548,681 + Xcc-8004.3669.1 0.11 -0.6 3,548,681 + Xcc-8004.3669.1 0.11 -1.1 3,548,681 + Xcc-8004.3669.1 0.11 +0.5 3,548,681 + Xcc-8004.3669.1 0.11 +2.6 3,548,681 + Xcc-8004.3669.1 0.11 -0.4 3,548,682 - Xcc-8004.3669.1 0.11 +0.9 3,548,822 + Xcc-8004.3669.1 0.21 +0.1 3,548,822 + Xcc-8004.3669.1 0.21 +0.6 3,548,822 + Xcc-8004.3669.1 0.21 +0.3 3,548,823 - Xcc-8004.3669.1 0.21 -0.7 3,548,920 - Xcc-8004.3669.1 0.29 -0.6
Or see this region's nucleotide sequence