Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3333.1 and Xcc-8004.3334.1 are separated by 171 nucleotides Xcc-8004.3334.1 and Xcc-8004.3335.1 are separated by 211 nucleotides
Xcc-8004.3333.1: Xcc-8004.3333.1 - 5'-nucleotidase (EC 3.1.3.5), at 3,232,652 to 3,233,617
Xcc-8004.3333.1
Xcc-8004.3334.1: Xcc-8004.3334.1 - NAD kinase (EC 2.7.1.23), at 3,233,789 to 3,234,565
Xcc-8004.3334.1
Xcc-8004.3335.1: Xcc-8004.3335.1 - 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-), at 3,234,777 to 3,236,912
Xcc-8004.3335.1
Position (kb) 3233
3234
3235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3233.274 kb on + strand, within Xcc-8004.3333.1 at 3233.274 kb on + strand, within Xcc-8004.3333.1 at 3233.275 kb on - strand, within Xcc-8004.3333.1 at 3233.275 kb on - strand, within Xcc-8004.3333.1 at 3233.275 kb on - strand, within Xcc-8004.3333.1 at 3233.328 kb on + strand, within Xcc-8004.3333.1 at 3233.329 kb on - strand, within Xcc-8004.3333.1 at 3233.329 kb on - strand, within Xcc-8004.3333.1 at 3233.329 kb on - strand, within Xcc-8004.3333.1 at 3233.329 kb on - strand, within Xcc-8004.3333.1 at 3233.619 kb on + strand at 3233.619 kb on + strand at 3233.707 kb on + strand at 3233.707 kb on + strand at 3233.708 kb on - strand at 3233.708 kb on - strand at 3233.721 kb on + strand at 3233.721 kb on + strand at 3233.721 kb on + strand at 3233.721 kb on + strand at 3233.721 kb on + strand at 3233.721 kb on + strand at 3233.722 kb on - strand at 3233.722 kb on - strand at 3233.773 kb on - strand at 3234.684 kb on + strand at 3234.685 kb on - strand at 3235.159 kb on + strand, within Xcc-8004.3335.1 at 3235.159 kb on + strand, within Xcc-8004.3335.1 at 3235.159 kb on + strand, within Xcc-8004.3335.1 at 3235.163 kb on + strand, within Xcc-8004.3335.1 at 3235.235 kb on - strand, within Xcc-8004.3335.1 at 3235.235 kb on - strand, within Xcc-8004.3335.1 at 3235.327 kb on + strand, within Xcc-8004.3335.1 at 3235.328 kb on - strand, within Xcc-8004.3335.1 at 3235.386 kb on - strand, within Xcc-8004.3335.1 at 3235.405 kb on + strand, within Xcc-8004.3335.1 at 3235.405 kb on + strand, within Xcc-8004.3335.1 at 3235.406 kb on - strand, within Xcc-8004.3335.1 at 3235.406 kb on - strand, within Xcc-8004.3335.1 at 3235.546 kb on + strand, within Xcc-8004.3335.1 at 3235.546 kb on + strand, within Xcc-8004.3335.1 at 3235.546 kb on + strand, within Xcc-8004.3335.1 at 3235.547 kb on - strand, within Xcc-8004.3335.1 at 3235.547 kb on - strand, within Xcc-8004.3335.1 at 3235.547 kb on - strand, within Xcc-8004.3335.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 3,233,274 + Xcc-8004.3333.1 0.64 +1.2 3,233,274 + Xcc-8004.3333.1 0.64 +0.4 3,233,275 - Xcc-8004.3333.1 0.64 -0.4 3,233,275 - Xcc-8004.3333.1 0.64 -0.1 3,233,275 - Xcc-8004.3333.1 0.64 -0.7 3,233,328 + Xcc-8004.3333.1 0.70 -0.7 3,233,329 - Xcc-8004.3333.1 0.70 -0.9 3,233,329 - Xcc-8004.3333.1 0.70 -0.3 3,233,329 - Xcc-8004.3333.1 0.70 +0.7 3,233,329 - Xcc-8004.3333.1 0.70 -1.0 3,233,619 + -0.2 3,233,619 + -2.5 3,233,707 + -0.4 3,233,707 + +0.0 3,233,708 - +1.0 3,233,708 - +0.1 3,233,721 + +1.0 3,233,721 + -1.2 3,233,721 + -0.0 3,233,721 + +0.5 3,233,721 + -0.2 3,233,721 + -0.0 3,233,722 - +0.0 3,233,722 - -0.7 3,233,773 - -0.1 3,234,684 + -0.7 3,234,685 - +0.6 3,235,159 + Xcc-8004.3335.1 0.18 -0.4 3,235,159 + Xcc-8004.3335.1 0.18 +0.9 3,235,159 + Xcc-8004.3335.1 0.18 -0.2 3,235,163 + Xcc-8004.3335.1 0.18 -1.6 3,235,235 - Xcc-8004.3335.1 0.21 -0.3 3,235,235 - Xcc-8004.3335.1 0.21 -0.2 3,235,327 + Xcc-8004.3335.1 0.26 -0.1 3,235,328 - Xcc-8004.3335.1 0.26 -0.8 3,235,386 - Xcc-8004.3335.1 0.29 -1.7 3,235,405 + Xcc-8004.3335.1 0.29 -0.8 3,235,405 + Xcc-8004.3335.1 0.29 +0.5 3,235,406 - Xcc-8004.3335.1 0.29 +2.2 3,235,406 - Xcc-8004.3335.1 0.29 -0.6 3,235,546 + Xcc-8004.3335.1 0.36 +1.2 3,235,546 + Xcc-8004.3335.1 0.36 +0.7 3,235,546 + Xcc-8004.3335.1 0.36 -0.3 3,235,547 - Xcc-8004.3335.1 0.36 +0.5 3,235,547 - Xcc-8004.3335.1 0.36 -1.0 3,235,547 - Xcc-8004.3335.1 0.36 +0.7
Or see this region's nucleotide sequence