Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3326.1 and Xcc-8004.3327.1 are separated by 32 nucleotides Xcc-8004.3327.1 and Xcc-8004.3328.1 are separated by 49 nucleotides
Xcc-8004.3326.1: Xcc-8004.3326.1 - FIG01212390: hypothetical protein, at 3,223,728 to 3,225,971
Xcc-8004.3326.1
Xcc-8004.3327.1: Xcc-8004.3327.1 - Kynureninase (EC 3.7.1.3), at 3,226,004 to 3,227,275
Xcc-8004.3327.1
Xcc-8004.3328.1: Xcc-8004.3328.1 - Kynurenine 3-monooxygenase (EC 1.14.13.9), at 3,227,325 to 3,228,695
Xcc-8004.3328.1
Position (kb) 3226
3227
3228 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3225.234 kb on + strand, within Xcc-8004.3326.1 at 3225.234 kb on + strand, within Xcc-8004.3326.1 at 3225.235 kb on - strand, within Xcc-8004.3326.1 at 3225.235 kb on - strand, within Xcc-8004.3326.1 at 3225.235 kb on - strand, within Xcc-8004.3326.1 at 3225.235 kb on - strand, within Xcc-8004.3326.1 at 3225.866 kb on + strand at 3225.866 kb on + strand at 3225.866 kb on + strand at 3225.969 kb on + strand at 3225.970 kb on - strand at 3225.970 kb on - strand at 3225.970 kb on - strand at 3226.115 kb on + strand at 3226.115 kb on + strand at 3226.116 kb on - strand at 3226.116 kb on - strand at 3226.241 kb on + strand, within Xcc-8004.3327.1 at 3226.241 kb on + strand, within Xcc-8004.3327.1 at 3226.241 kb on + strand, within Xcc-8004.3327.1 at 3226.241 kb on + strand, within Xcc-8004.3327.1 at 3226.241 kb on + strand, within Xcc-8004.3327.1 at 3226.241 kb on + strand, within Xcc-8004.3327.1 at 3226.242 kb on - strand, within Xcc-8004.3327.1 at 3226.242 kb on - strand, within Xcc-8004.3327.1 at 3226.242 kb on - strand, within Xcc-8004.3327.1 at 3226.352 kb on + strand, within Xcc-8004.3327.1 at 3226.580 kb on + strand, within Xcc-8004.3327.1 at 3226.730 kb on + strand, within Xcc-8004.3327.1 at 3226.731 kb on - strand, within Xcc-8004.3327.1 at 3226.731 kb on - strand, within Xcc-8004.3327.1 at 3226.736 kb on + strand, within Xcc-8004.3327.1 at 3226.736 kb on + strand, within Xcc-8004.3327.1 at 3226.737 kb on - strand, within Xcc-8004.3327.1 at 3226.737 kb on - strand, within Xcc-8004.3327.1 at 3226.869 kb on + strand, within Xcc-8004.3327.1 at 3226.870 kb on - strand, within Xcc-8004.3327.1 at 3226.870 kb on - strand, within Xcc-8004.3327.1 at 3226.870 kb on - strand, within Xcc-8004.3327.1 at 3226.870 kb on - strand, within Xcc-8004.3327.1 at 3226.870 kb on - strand, within Xcc-8004.3327.1 at 3227.142 kb on - strand, within Xcc-8004.3327.1 at 3227.142 kb on - strand, within Xcc-8004.3327.1 at 3227.213 kb on + strand at 3227.213 kb on + strand at 3227.213 kb on + strand at 3227.213 kb on + strand at 3227.213 kb on + strand at 3227.214 kb on - strand at 3227.430 kb on + strand at 3227.431 kb on - strand at 3227.431 kb on - strand at 3227.546 kb on - strand, within Xcc-8004.3328.1 at 3227.719 kb on - strand, within Xcc-8004.3328.1 at 3227.719 kb on - strand, within Xcc-8004.3328.1 at 3227.904 kb on + strand, within Xcc-8004.3328.1 at 3227.904 kb on + strand, within Xcc-8004.3328.1 at 3227.905 kb on - strand, within Xcc-8004.3328.1 at 3227.905 kb on - strand, within Xcc-8004.3328.1 at 3227.988 kb on + strand, within Xcc-8004.3328.1 at 3227.988 kb on + strand, within Xcc-8004.3328.1 at 3227.989 kb on - strand, within Xcc-8004.3328.1 at 3227.989 kb on - strand, within Xcc-8004.3328.1 at 3227.989 kb on - strand, within Xcc-8004.3328.1 at 3227.989 kb on - strand, within Xcc-8004.3328.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 3,225,234 + Xcc-8004.3326.1 0.67 +0.0 3,225,234 + Xcc-8004.3326.1 0.67 +0.3 3,225,235 - Xcc-8004.3326.1 0.67 -0.7 3,225,235 - Xcc-8004.3326.1 0.67 -1.0 3,225,235 - Xcc-8004.3326.1 0.67 -0.8 3,225,235 - Xcc-8004.3326.1 0.67 -0.1 3,225,866 + -0.1 3,225,866 + +0.5 3,225,866 + +0.3 3,225,969 + +0.2 3,225,970 - +0.8 3,225,970 - +0.1 3,225,970 - +1.4 3,226,115 + -1.2 3,226,115 + -1.1 3,226,116 - -1.5 3,226,116 - +0.1 3,226,241 + Xcc-8004.3327.1 0.19 -1.5 3,226,241 + Xcc-8004.3327.1 0.19 -1.4 3,226,241 + Xcc-8004.3327.1 0.19 -1.0 3,226,241 + Xcc-8004.3327.1 0.19 -0.9 3,226,241 + Xcc-8004.3327.1 0.19 -1.4 3,226,241 + Xcc-8004.3327.1 0.19 -1.5 3,226,242 - Xcc-8004.3327.1 0.19 -1.2 3,226,242 - Xcc-8004.3327.1 0.19 -0.5 3,226,242 - Xcc-8004.3327.1 0.19 -0.5 3,226,352 + Xcc-8004.3327.1 0.27 -1.3 3,226,580 + Xcc-8004.3327.1 0.45 -0.5 3,226,730 + Xcc-8004.3327.1 0.57 -2.6 3,226,731 - Xcc-8004.3327.1 0.57 +1.3 3,226,731 - Xcc-8004.3327.1 0.57 -2.8 3,226,736 + Xcc-8004.3327.1 0.58 -0.7 3,226,736 + Xcc-8004.3327.1 0.58 -2.6 3,226,737 - Xcc-8004.3327.1 0.58 -0.7 3,226,737 - Xcc-8004.3327.1 0.58 -1.7 3,226,869 + Xcc-8004.3327.1 0.68 -1.1 3,226,870 - Xcc-8004.3327.1 0.68 -1.9 3,226,870 - Xcc-8004.3327.1 0.68 -1.6 3,226,870 - Xcc-8004.3327.1 0.68 -1.8 3,226,870 - Xcc-8004.3327.1 0.68 -1.4 3,226,870 - Xcc-8004.3327.1 0.68 -3.0 3,227,142 - Xcc-8004.3327.1 0.89 -0.3 3,227,142 - Xcc-8004.3327.1 0.89 -3.0 3,227,213 + -1.8 3,227,213 + -0.9 3,227,213 + -2.1 3,227,213 + -1.3 3,227,213 + -1.3 3,227,214 - -2.2 3,227,430 + +0.3 3,227,431 - -0.5 3,227,431 - -1.4 3,227,546 - Xcc-8004.3328.1 0.16 -0.5 3,227,719 - Xcc-8004.3328.1 0.29 +0.0 3,227,719 - Xcc-8004.3328.1 0.29 -0.8 3,227,904 + Xcc-8004.3328.1 0.42 -0.9 3,227,904 + Xcc-8004.3328.1 0.42 -1.2 3,227,905 - Xcc-8004.3328.1 0.42 -1.3 3,227,905 - Xcc-8004.3328.1 0.42 -1.5 3,227,988 + Xcc-8004.3328.1 0.48 -1.6 3,227,988 + Xcc-8004.3328.1 0.48 -1.9 3,227,989 - Xcc-8004.3328.1 0.48 -2.2 3,227,989 - Xcc-8004.3328.1 0.48 -1.4 3,227,989 - Xcc-8004.3328.1 0.48 -1.3 3,227,989 - Xcc-8004.3328.1 0.48 -0.8
Or see this region's nucleotide sequence