Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3091.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3089.1 and Xcc-8004.3090.1 overlap by 1 nucleotidesXcc-8004.3090.1 and Xcc-8004.3091.1 are separated by 51 nucleotidesXcc-8004.3091.1 and Xcc-8004.3092.1 overlap by 10 nucleotides Xcc-8004.3089.1: Xcc-8004.3089.1 - Predicted ATPase related to phosphate starvation-inducible protein PhoH, at 3,024,616 to 3,026,013 Xcc-8004.3089.1 Xcc-8004.3090.1: Xcc-8004.3090.1 - FIG01210237: hypothetical protein, at 3,026,013 to 3,026,492 Xcc-8004.3090.1 Xcc-8004.3091.1: Xcc-8004.3091.1 - hypothetical protein, at 3,026,544 to 3,027,374 Xcc-8004.3091.1 Xcc-8004.3092.1: Xcc-8004.3092.1 - FIG01213027: hypothetical protein, at 3,027,365 to 3,028,216 Xcc-8004.3092.1 Position (kb) 3026 3027 3028Strain fitness (log2 ratio) -2 -1 0 1at 3025.762 kb on + strand, within Xcc-8004.3089.1at 3025.882 kb on + strandat 3025.882 kb on + strandat 3025.883 kb on - strandat 3025.912 kb on + strandat 3025.912 kb on + strandat 3025.913 kb on - strandat 3025.913 kb on - strandat 3025.913 kb on - strandat 3025.913 kb on - strandat 3025.913 kb on - strandat 3025.913 kb on - strandat 3026.209 kb on - strand, within Xcc-8004.3090.1at 3026.209 kb on - strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.304 kb on + strand, within Xcc-8004.3090.1at 3026.305 kb on - strand, within Xcc-8004.3090.1at 3026.305 kb on - strand, within Xcc-8004.3090.1at 3026.305 kb on - strand, within Xcc-8004.3090.1at 3026.305 kb on - strand, within Xcc-8004.3090.1at 3026.340 kb on + strand, within Xcc-8004.3090.1at 3026.340 kb on + strand, within Xcc-8004.3090.1at 3026.340 kb on + strand, within Xcc-8004.3090.1at 3026.340 kb on + strand, within Xcc-8004.3090.1at 3026.340 kb on + strand, within Xcc-8004.3090.1at 3026.340 kb on + strand, within Xcc-8004.3090.1at 3026.341 kb on - strand, within Xcc-8004.3090.1at 3026.341 kb on - strand, within Xcc-8004.3090.1at 3026.341 kb on - strand, within Xcc-8004.3090.1at 3026.341 kb on - strand, within Xcc-8004.3090.1at 3026.439 kb on + strand, within Xcc-8004.3090.1at 3026.439 kb on + strand, within Xcc-8004.3090.1at 3026.439 kb on + strand, within Xcc-8004.3090.1at 3026.439 kb on + strand, within Xcc-8004.3090.1at 3026.440 kb on - strand, within Xcc-8004.3090.1at 3026.681 kb on + strand, within Xcc-8004.3091.1at 3026.682 kb on - strand, within Xcc-8004.3091.1at 3027.001 kb on + strand, within Xcc-8004.3091.1at 3027.001 kb on + strand, within Xcc-8004.3091.1at 3027.002 kb on - strand, within Xcc-8004.3091.1at 3027.279 kb on + strand, within Xcc-8004.3091.1at 3027.279 kb on + strand, within Xcc-8004.3091.1at 3027.279 kb on + strand, within Xcc-8004.3091.1at 3027.279 kb on + strand, within Xcc-8004.3091.1at 3027.280 kb on - strand, within Xcc-8004.3091.1at 3027.280 kb on - strand, within Xcc-8004.3091.1at 3027.280 kb on - strand, within Xcc-8004.3091.1at 3027.280 kb on - strand, within Xcc-8004.3091.1at 3027.280 kb on - strand, within Xcc-8004.3091.1at 3027.280 kb on - strand, within Xcc-8004.3091.1at 3027.431 kb on + strandat 3027.432 kb on - strandat 3027.469 kb on - strand, within Xcc-8004.3092.1at 3027.497 kb on + strand, within Xcc-8004.3092.1at 3027.497 kb on + strand, within Xcc-8004.3092.1at 3027.497 kb on + strand, within Xcc-8004.3092.1at 3027.498 kb on - strand, within Xcc-8004.3092.1at 3027.498 kb on - strand, within Xcc-8004.3092.1at 3027.498 kb on - strand, within Xcc-8004.3092.1at 3028.057 kb on + strand, within Xcc-8004.3092.1at 3028.058 kb on - strand, within Xcc-8004.3092.1at 3028.215 kb on - strandat 3028.292 kb on + strandat 3028.292 kb on + strandat 3028.305 kb on + strandat 3028.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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3,025,762 + Xcc-8004.3089.1 0.82 -0.1
3,025,882 + -0.1
3,025,882 + +0.8
3,025,883 - -2.5
3,025,912 + -2.1
3,025,912 + -0.5
3,025,913 - -0.5
3,025,913 - -0.5
3,025,913 - -1.7
3,025,913 - -0.6
3,025,913 - +0.5
3,025,913 - +1.2
3,026,209 - Xcc-8004.3090.1 0.41 -0.9
3,026,209 - Xcc-8004.3090.1 0.41 +1.2
3,026,304 + Xcc-8004.3090.1 0.61 +0.9
3,026,304 + Xcc-8004.3090.1 0.61 -0.1
3,026,304 + Xcc-8004.3090.1 0.61 -0.0
3,026,304 + Xcc-8004.3090.1 0.61 +0.0
3,026,304 + Xcc-8004.3090.1 0.61 +0.1
3,026,304 + Xcc-8004.3090.1 0.61 +0.3
3,026,304 + Xcc-8004.3090.1 0.61 -2.0
3,026,304 + Xcc-8004.3090.1 0.61 +0.6
3,026,305 - Xcc-8004.3090.1 0.61 +1.0
3,026,305 - Xcc-8004.3090.1 0.61 +0.4
3,026,305 - Xcc-8004.3090.1 0.61 -0.8
3,026,305 - Xcc-8004.3090.1 0.61 -0.2
3,026,340 + Xcc-8004.3090.1 0.68 -1.3
3,026,340 + Xcc-8004.3090.1 0.68 -0.1
3,026,340 + Xcc-8004.3090.1 0.68 +0.3
3,026,340 + Xcc-8004.3090.1 0.68 +0.1
3,026,340 + Xcc-8004.3090.1 0.68 +0.6
3,026,340 + Xcc-8004.3090.1 0.68 +0.3
3,026,341 - Xcc-8004.3090.1 0.68 -0.8
3,026,341 - Xcc-8004.3090.1 0.68 +0.3
3,026,341 - Xcc-8004.3090.1 0.68 -2.1
3,026,341 - Xcc-8004.3090.1 0.68 -0.1
3,026,439 + Xcc-8004.3090.1 0.89 +0.3
3,026,439 + Xcc-8004.3090.1 0.89 +0.1
3,026,439 + Xcc-8004.3090.1 0.89 -0.3
3,026,439 + Xcc-8004.3090.1 0.89 -1.0
3,026,440 - Xcc-8004.3090.1 0.89 -0.2
3,026,681 + Xcc-8004.3091.1 0.16 -0.7
3,026,682 - Xcc-8004.3091.1 0.17 -2.3
3,027,001 + Xcc-8004.3091.1 0.55 -2.0
3,027,001 + Xcc-8004.3091.1 0.55 -0.5
3,027,002 - Xcc-8004.3091.1 0.55 -1.7
3,027,279 + Xcc-8004.3091.1 0.88 +0.0
3,027,279 + Xcc-8004.3091.1 0.88 -0.6
3,027,279 + Xcc-8004.3091.1 0.88 -0.3
3,027,279 + Xcc-8004.3091.1 0.88 -0.4
3,027,280 - Xcc-8004.3091.1 0.89 -2.4
3,027,280 - Xcc-8004.3091.1 0.89 -1.4
3,027,280 - Xcc-8004.3091.1 0.89 -0.9
3,027,280 - Xcc-8004.3091.1 0.89 -1.8
3,027,280 - Xcc-8004.3091.1 0.89 -0.5
3,027,280 - Xcc-8004.3091.1 0.89 -0.9
3,027,431 + -1.0
3,027,432 - -0.2
3,027,469 - Xcc-8004.3092.1 0.12 -0.0
3,027,497 + Xcc-8004.3092.1 0.15 +0.8
3,027,497 + Xcc-8004.3092.1 0.15 -0.1
3,027,497 + Xcc-8004.3092.1 0.15 -0.3
3,027,498 - Xcc-8004.3092.1 0.16 +0.6
3,027,498 - Xcc-8004.3092.1 0.16 +0.7
3,027,498 - Xcc-8004.3092.1 0.16 -0.4
3,028,057 + Xcc-8004.3092.1 0.81 +0.1
3,028,058 - Xcc-8004.3092.1 0.81 +1.0
3,028,215 - +0.5
3,028,292 + +0.7
3,028,292 + -0.8
3,028,305 + +0.1
3,028,305 + -0.5

Or see this region's nucleotide sequence