Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2185.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2184.1 and Xcc-8004.2185.1 overlap by 2 nucleotidesXcc-8004.2185.1 and Xcc-8004.2186.1 are separated by 126 nucleotides Xcc-8004.2184.1: Xcc-8004.2184.1 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 2,125,358 to 2,126,359 Xcc-8004.2184.1 Xcc-8004.2185.1: Xcc-8004.2185.1 - Nicotinamidase (EC 3.5.1.19), at 2,126,358 to 2,127,056 Xcc-8004.2185.1 Xcc-8004.2186.1: Xcc-8004.2186.1 - Drug resistance translocase, at 2,127,183 to 2,128,613 Xcc-8004.2186.1 Position (kb) 2126 2127 2128Strain fitness (log2 ratio) -2 -1 0 1at 2125.382 kb on + strandat 2125.382 kb on + strandat 2125.382 kb on + strandat 2125.383 kb on - strandat 2125.383 kb on - strandat 2125.467 kb on + strand, within Xcc-8004.2184.1at 2125.468 kb on - strand, within Xcc-8004.2184.1at 2125.735 kb on - strand, within Xcc-8004.2184.1at 2125.735 kb on - strand, within Xcc-8004.2184.1at 2125.827 kb on + strand, within Xcc-8004.2184.1at 2125.827 kb on + strand, within Xcc-8004.2184.1at 2125.827 kb on + strand, within Xcc-8004.2184.1at 2125.827 kb on + strand, within Xcc-8004.2184.1at 2125.827 kb on + strand, within Xcc-8004.2184.1at 2125.827 kb on + strand, within Xcc-8004.2184.1at 2125.827 kb on + strand, within Xcc-8004.2184.1at 2125.827 kb on + strand, within Xcc-8004.2184.1at 2125.827 kb on + strand, within Xcc-8004.2184.1at 2125.827 kb on + strand, within Xcc-8004.2184.1at 2125.828 kb on - strand, within Xcc-8004.2184.1at 2125.828 kb on - strand, within Xcc-8004.2184.1at 2125.828 kb on - strand, within Xcc-8004.2184.1at 2125.828 kb on - strand, within Xcc-8004.2184.1at 2125.828 kb on - strand, within Xcc-8004.2184.1at 2125.828 kb on - strand, within Xcc-8004.2184.1at 2125.828 kb on - strand, within Xcc-8004.2184.1at 2125.828 kb on - strand, within Xcc-8004.2184.1at 2125.890 kb on + strand, within Xcc-8004.2184.1at 2125.890 kb on + strand, within Xcc-8004.2184.1at 2125.890 kb on + strand, within Xcc-8004.2184.1at 2125.891 kb on - strand, within Xcc-8004.2184.1at 2125.992 kb on + strand, within Xcc-8004.2184.1at 2125.992 kb on + strand, within Xcc-8004.2184.1at 2125.993 kb on - strand, within Xcc-8004.2184.1at 2125.993 kb on - strand, within Xcc-8004.2184.1at 2126.004 kb on + strand, within Xcc-8004.2184.1at 2126.004 kb on + strand, within Xcc-8004.2184.1at 2126.004 kb on + strand, within Xcc-8004.2184.1at 2126.005 kb on - strand, within Xcc-8004.2184.1at 2126.005 kb on - strand, within Xcc-8004.2184.1at 2126.005 kb on - strand, within Xcc-8004.2184.1at 2126.013 kb on + strand, within Xcc-8004.2184.1at 2126.013 kb on + strand, within Xcc-8004.2184.1at 2126.013 kb on + strand, within Xcc-8004.2184.1at 2126.013 kb on + strand, within Xcc-8004.2184.1at 2126.014 kb on - strand, within Xcc-8004.2184.1at 2126.221 kb on + strand, within Xcc-8004.2184.1at 2126.222 kb on - strand, within Xcc-8004.2184.1at 2126.222 kb on - strand, within Xcc-8004.2184.1at 2126.222 kb on - strand, within Xcc-8004.2184.1at 2126.332 kb on + strandat 2126.332 kb on + strandat 2126.332 kb on + strandat 2126.332 kb on + strandat 2126.333 kb on - strandat 2126.333 kb on - strandat 2126.333 kb on - strandat 2126.425 kb on + strandat 2126.426 kb on - strandat 2126.426 kb on - strandat 2126.607 kb on + strand, within Xcc-8004.2185.1at 2126.607 kb on + strand, within Xcc-8004.2185.1at 2126.607 kb on + strand, within Xcc-8004.2185.1at 2126.608 kb on - strand, within Xcc-8004.2185.1at 2126.608 kb on - strand, within Xcc-8004.2185.1at 2126.608 kb on - strand, within Xcc-8004.2185.1at 2126.608 kb on - strand, within Xcc-8004.2185.1at 2126.608 kb on - strand, within Xcc-8004.2185.1at 2126.834 kb on + strand, within Xcc-8004.2185.1at 2127.397 kb on + strand, within Xcc-8004.2186.1at 2127.397 kb on + strand, within Xcc-8004.2186.1at 2127.398 kb on - strand, within Xcc-8004.2186.1at 2127.398 kb on - strand, within Xcc-8004.2186.1at 2127.398 kb on - strand, within Xcc-8004.2186.1at 2127.457 kb on + strand, within Xcc-8004.2186.1at 2127.458 kb on - strand, within Xcc-8004.2186.1at 2127.556 kb on + strand, within Xcc-8004.2186.1at 2127.556 kb on + strand, within Xcc-8004.2186.1at 2127.557 kb on - strand, within Xcc-8004.2186.1at 2127.557 kb on - strand, within Xcc-8004.2186.1at 2127.557 kb on - strand, within Xcc-8004.2186.1at 2127.557 kb on - strand, within Xcc-8004.2186.1at 2127.557 kb on - strand, within Xcc-8004.2186.1at 2127.557 kb on - strand, within Xcc-8004.2186.1at 2127.557 kb on - strand, within Xcc-8004.2186.1at 2127.752 kb on + strand, within Xcc-8004.2186.1at 2127.857 kb on - strand, within Xcc-8004.2186.1at 2127.857 kb on - strand, within Xcc-8004.2186.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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2,125,382 + +0.2
2,125,382 + -0.8
2,125,382 + -0.1
2,125,383 - +0.2
2,125,383 - +0.5
2,125,467 + Xcc-8004.2184.1 0.11 +0.9
2,125,468 - Xcc-8004.2184.1 0.11 +0.8
2,125,735 - Xcc-8004.2184.1 0.38 +0.4
2,125,735 - Xcc-8004.2184.1 0.38 +0.2
2,125,827 + Xcc-8004.2184.1 0.47 -0.2
2,125,827 + Xcc-8004.2184.1 0.47 +0.5
2,125,827 + Xcc-8004.2184.1 0.47 -0.3
2,125,827 + Xcc-8004.2184.1 0.47 +0.2
2,125,827 + Xcc-8004.2184.1 0.47 +0.5
2,125,827 + Xcc-8004.2184.1 0.47 -0.9
2,125,827 + Xcc-8004.2184.1 0.47 -0.3
2,125,827 + Xcc-8004.2184.1 0.47 +0.1
2,125,827 + Xcc-8004.2184.1 0.47 -0.4
2,125,827 + Xcc-8004.2184.1 0.47 -1.3
2,125,828 - Xcc-8004.2184.1 0.47 +0.2
2,125,828 - Xcc-8004.2184.1 0.47 +0.2
2,125,828 - Xcc-8004.2184.1 0.47 +0.1
2,125,828 - Xcc-8004.2184.1 0.47 -0.4
2,125,828 - Xcc-8004.2184.1 0.47 -0.2
2,125,828 - Xcc-8004.2184.1 0.47 +0.8
2,125,828 - Xcc-8004.2184.1 0.47 +0.1
2,125,828 - Xcc-8004.2184.1 0.47 -0.3
2,125,890 + Xcc-8004.2184.1 0.53 +0.5
2,125,890 + Xcc-8004.2184.1 0.53 -1.9
2,125,890 + Xcc-8004.2184.1 0.53 +1.0
2,125,891 - Xcc-8004.2184.1 0.53 +0.4
2,125,992 + Xcc-8004.2184.1 0.63 -0.3
2,125,992 + Xcc-8004.2184.1 0.63 +1.4
2,125,993 - Xcc-8004.2184.1 0.63 +0.7
2,125,993 - Xcc-8004.2184.1 0.63 +0.7
2,126,004 + Xcc-8004.2184.1 0.64 -1.3
2,126,004 + Xcc-8004.2184.1 0.64 +0.3
2,126,004 + Xcc-8004.2184.1 0.64 +0.3
2,126,005 - Xcc-8004.2184.1 0.65 +0.3
2,126,005 - Xcc-8004.2184.1 0.65 +1.7
2,126,005 - Xcc-8004.2184.1 0.65 -2.6
2,126,013 + Xcc-8004.2184.1 0.65 -0.4
2,126,013 + Xcc-8004.2184.1 0.65 -0.9
2,126,013 + Xcc-8004.2184.1 0.65 -0.3
2,126,013 + Xcc-8004.2184.1 0.65 -0.0
2,126,014 - Xcc-8004.2184.1 0.65 +0.5
2,126,221 + Xcc-8004.2184.1 0.86 -2.2
2,126,222 - Xcc-8004.2184.1 0.86 +0.4
2,126,222 - Xcc-8004.2184.1 0.86 -0.4
2,126,222 - Xcc-8004.2184.1 0.86 -0.8
2,126,332 + -0.5
2,126,332 + +1.4
2,126,332 + -0.5
2,126,332 + -0.4
2,126,333 - +0.4
2,126,333 - +0.4
2,126,333 - +1.5
2,126,425 + -0.1
2,126,426 - +1.4
2,126,426 - +1.0
2,126,607 + Xcc-8004.2185.1 0.36 +0.2
2,126,607 + Xcc-8004.2185.1 0.36 -0.2
2,126,607 + Xcc-8004.2185.1 0.36 -0.3
2,126,608 - Xcc-8004.2185.1 0.36 -0.9
2,126,608 - Xcc-8004.2185.1 0.36 +1.2
2,126,608 - Xcc-8004.2185.1 0.36 -0.1
2,126,608 - Xcc-8004.2185.1 0.36 +0.0
2,126,608 - Xcc-8004.2185.1 0.36 -0.3
2,126,834 + Xcc-8004.2185.1 0.68 -0.2
2,127,397 + Xcc-8004.2186.1 0.15 +0.1
2,127,397 + Xcc-8004.2186.1 0.15 +1.2
2,127,398 - Xcc-8004.2186.1 0.15 +0.5
2,127,398 - Xcc-8004.2186.1 0.15 +0.4
2,127,398 - Xcc-8004.2186.1 0.15 -1.2
2,127,457 + Xcc-8004.2186.1 0.19 +0.0
2,127,458 - Xcc-8004.2186.1 0.19 -0.6
2,127,556 + Xcc-8004.2186.1 0.26 -0.9
2,127,556 + Xcc-8004.2186.1 0.26 +0.6
2,127,557 - Xcc-8004.2186.1 0.26 +1.3
2,127,557 - Xcc-8004.2186.1 0.26 -0.9
2,127,557 - Xcc-8004.2186.1 0.26 -0.6
2,127,557 - Xcc-8004.2186.1 0.26 +0.1
2,127,557 - Xcc-8004.2186.1 0.26 +0.9
2,127,557 - Xcc-8004.2186.1 0.26 +0.8
2,127,557 - Xcc-8004.2186.1 0.26 -0.8
2,127,752 + Xcc-8004.2186.1 0.40 +0.2
2,127,857 - Xcc-8004.2186.1 0.47 -0.2
2,127,857 - Xcc-8004.2186.1 0.47 +0.0

Or see this region's nucleotide sequence