Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1859.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1858.1 and Xcc-8004.1859.1 are separated by 33 nucleotidesXcc-8004.1859.1 and Xcc-8004.1860.1 are separated by 277 nucleotides Xcc-8004.1858.1: Xcc-8004.1858.1 - FIG01211170: hypothetical protein, at 1,793,414 to 1,794,832 Xcc-8004.1858.1 Xcc-8004.1859.1: Xcc-8004.1859.1 - Transcriptional regulator, at 1,794,866 to 1,795,180 Xcc-8004.1859.1 Xcc-8004.1860.1: Xcc-8004.1860.1 - transcriptional regulator, at 1,795,458 to 1,796,450 Xcc-8004.1860.1 Position (kb) 1794 1795 1796Strain fitness (log2 ratio) -1 0 1 2 3at 1793.921 kb on - strand, within Xcc-8004.1858.1at 1794.828 kb on + strandat 1794.829 kb on - strandat 1794.829 kb on - strandat 1794.829 kb on - strandat 1794.981 kb on + strand, within Xcc-8004.1859.1at 1794.982 kb on - strand, within Xcc-8004.1859.1at 1794.982 kb on - strand, within Xcc-8004.1859.1at 1795.119 kb on + strand, within Xcc-8004.1859.1at 1795.119 kb on + strand, within Xcc-8004.1859.1at 1795.120 kb on - strand, within Xcc-8004.1859.1at 1795.120 kb on - strand, within Xcc-8004.1859.1at 1795.188 kb on + strandat 1795.189 kb on - strandat 1795.189 kb on - strandat 1795.192 kb on + strandat 1795.192 kb on + strandat 1795.193 kb on - strandat 1795.193 kb on - strandat 1795.208 kb on + strandat 1795.209 kb on - strandat 1795.212 kb on + strandat 1795.212 kb on + strandat 1795.213 kb on - strandat 1795.217 kb on - strandat 1795.217 kb on - strandat 1795.221 kb on - strandat 1795.339 kb on + strandat 1795.339 kb on + strandat 1795.340 kb on - strandat 1795.340 kb on - strandat 1795.340 kb on - strandat 1795.340 kb on - strandat 1795.442 kb on + strandat 1795.442 kb on + strandat 1795.442 kb on + strandat 1795.442 kb on + strandat 1795.442 kb on + strandat 1795.443 kb on - strandat 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.651 kb on + strand, within Xcc-8004.1860.1at 1795.652 kb on - strand, within Xcc-8004.1860.1at 1795.652 kb on - strand, within Xcc-8004.1860.1at 1795.652 kb on - strand, within Xcc-8004.1860.1at 1795.652 kb on - strand, within Xcc-8004.1860.1at 1795.652 kb on - strand, within Xcc-8004.1860.1at 1795.652 kb on - strand, within Xcc-8004.1860.1at 1795.652 kb on - strand, within Xcc-8004.1860.1at 1795.655 kb on - strand, within Xcc-8004.1860.1at 1795.655 kb on - strand, within Xcc-8004.1860.1at 1795.655 kb on - strand, within Xcc-8004.1860.1at 1795.692 kb on + strand, within Xcc-8004.1860.1at 1795.692 kb on + strand, within Xcc-8004.1860.1at 1795.692 kb on + strand, within Xcc-8004.1860.1at 1795.692 kb on + strand, within Xcc-8004.1860.1at 1795.693 kb on - strand, within Xcc-8004.1860.1at 1795.693 kb on - strand, within Xcc-8004.1860.1at 1795.702 kb on + strand, within Xcc-8004.1860.1at 1795.702 kb on + strand, within Xcc-8004.1860.1at 1795.703 kb on - strand, within Xcc-8004.1860.1at 1795.714 kb on + strand, within Xcc-8004.1860.1at 1795.714 kb on + strand, within Xcc-8004.1860.1at 1795.714 kb on + strand, within Xcc-8004.1860.1at 1795.715 kb on - strand, within Xcc-8004.1860.1at 1796.134 kb on + strand, within Xcc-8004.1860.1at 1796.134 kb on + strand, within Xcc-8004.1860.1at 1796.134 kb on + strand, within Xcc-8004.1860.1at 1796.134 kb on + strand, within Xcc-8004.1860.1at 1796.134 kb on + strand, within Xcc-8004.1860.1at 1796.134 kb on + strand, within Xcc-8004.1860.1at 1796.135 kb on - strand, within Xcc-8004.1860.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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1,793,921 - Xcc-8004.1858.1 0.36 -0.8
1,794,828 + -0.7
1,794,829 - +0.4
1,794,829 - +0.4
1,794,829 - +1.0
1,794,981 + Xcc-8004.1859.1 0.37 -0.7
1,794,982 - Xcc-8004.1859.1 0.37 -1.1
1,794,982 - Xcc-8004.1859.1 0.37 +0.1
1,795,119 + Xcc-8004.1859.1 0.80 -1.2
1,795,119 + Xcc-8004.1859.1 0.80 -1.5
1,795,120 - Xcc-8004.1859.1 0.81 -0.3
1,795,120 - Xcc-8004.1859.1 0.81 -1.7
1,795,188 + +0.9
1,795,189 - -0.8
1,795,189 - -0.0
1,795,192 + -1.2
1,795,192 + -0.7
1,795,193 - -0.3
1,795,193 - +0.8
1,795,208 + +0.8
1,795,209 - -0.7
1,795,212 + +1.8
1,795,212 + -0.7
1,795,213 - -1.4
1,795,217 - -1.3
1,795,217 - -0.4
1,795,221 - -0.2
1,795,339 + -0.1
1,795,339 + +0.3
1,795,340 - +0.3
1,795,340 - +2.9
1,795,340 - -0.1
1,795,340 - +0.5
1,795,442 + -0.8
1,795,442 + -0.4
1,795,442 + +0.8
1,795,442 + -0.4
1,795,442 + +1.7
1,795,443 - +0.2
1,795,651 + Xcc-8004.1860.1 0.19 -0.9
1,795,651 + Xcc-8004.1860.1 0.19 +0.1
1,795,651 + Xcc-8004.1860.1 0.19 +0.2
1,795,651 + Xcc-8004.1860.1 0.19 +2.4
1,795,651 + Xcc-8004.1860.1 0.19 -0.6
1,795,651 + Xcc-8004.1860.1 0.19 +1.2
1,795,651 + Xcc-8004.1860.1 0.19 -0.6
1,795,651 + Xcc-8004.1860.1 0.19 -0.9
1,795,651 + Xcc-8004.1860.1 0.19 +0.7
1,795,651 + Xcc-8004.1860.1 0.19 -0.0
1,795,651 + Xcc-8004.1860.1 0.19 -0.8
1,795,651 + Xcc-8004.1860.1 0.19 -1.4
1,795,651 + Xcc-8004.1860.1 0.19 +0.9
1,795,652 - Xcc-8004.1860.1 0.20 +0.2
1,795,652 - Xcc-8004.1860.1 0.20 -0.7
1,795,652 - Xcc-8004.1860.1 0.20 +0.4
1,795,652 - Xcc-8004.1860.1 0.20 +0.8
1,795,652 - Xcc-8004.1860.1 0.20 -0.1
1,795,652 - Xcc-8004.1860.1 0.20 +0.2
1,795,652 - Xcc-8004.1860.1 0.20 -0.4
1,795,655 - Xcc-8004.1860.1 0.20 +0.2
1,795,655 - Xcc-8004.1860.1 0.20 -0.2
1,795,655 - Xcc-8004.1860.1 0.20 +0.2
1,795,692 + Xcc-8004.1860.1 0.24 -0.8
1,795,692 + Xcc-8004.1860.1 0.24 +0.1
1,795,692 + Xcc-8004.1860.1 0.24 -0.2
1,795,692 + Xcc-8004.1860.1 0.24 -0.8
1,795,693 - Xcc-8004.1860.1 0.24 -0.9
1,795,693 - Xcc-8004.1860.1 0.24 -0.2
1,795,702 + Xcc-8004.1860.1 0.25 -0.2
1,795,702 + Xcc-8004.1860.1 0.25 -0.8
1,795,703 - Xcc-8004.1860.1 0.25 -0.1
1,795,714 + Xcc-8004.1860.1 0.26 +0.6
1,795,714 + Xcc-8004.1860.1 0.26 -0.3
1,795,714 + Xcc-8004.1860.1 0.26 +1.6
1,795,715 - Xcc-8004.1860.1 0.26 +0.8
1,796,134 + Xcc-8004.1860.1 0.68 -0.5
1,796,134 + Xcc-8004.1860.1 0.68 -1.0
1,796,134 + Xcc-8004.1860.1 0.68 +0.5
1,796,134 + Xcc-8004.1860.1 0.68 -0.7
1,796,134 + Xcc-8004.1860.1 0.68 -0.1
1,796,134 + Xcc-8004.1860.1 0.68 +0.3
1,796,135 - Xcc-8004.1860.1 0.68 +0.3

Or see this region's nucleotide sequence