Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.163.1 and Xcc-8004.164.1 are separated by 186 nucleotides Xcc-8004.164.1 and Xcc-8004.165.1 are separated by 60 nucleotides Xcc-8004.165.1 and Xcc-8004.166.1 overlap by 4 nucleotides Xcc-8004.166.1 and Xcc-8004.168.1 are separated by 505 nucleotides
Xcc-8004.163.1: Xcc-8004.163.1 - FIG01210576: hypothetical protein, at 155,229 to 159,110
Xcc-8004.163.1
Xcc-8004.164.1: Xcc-8004.164.1 - putative; ORF located using Glimmer/Genemark, at 159,297 to 159,506
Xcc-8004.164.1
Xcc-8004.165.1: Xcc-8004.165.1 - hypothetical protein, at 159,567 to 159,950
Xcc-8004.165.1
Xcc-8004.166.1: Xcc-8004.166.1 - FIG01209997: hypothetical protein, at 159,947 to 160,204
Xcc-8004.166.1
Xcc-8004.168.1: Xcc-8004.168.1 - hypothetical protein, at 160,710 to 161,405
Xcc-8004.168.1
Position (kb) 159
160 Strain fitness (log2 ratio) -1
0
1
2 at 158.764 kb on + strand at 158.962 kb on + strand at 158.962 kb on + strand at 158.962 kb on + strand at 158.962 kb on + strand at 158.963 kb on - strand at 158.963 kb on - strand at 159.057 kb on - strand at 159.152 kb on + strand at 159.152 kb on + strand at 159.152 kb on + strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.253 kb on + strand at 159.253 kb on + strand at 159.254 kb on - strand at 159.378 kb on - strand, within Xcc-8004.164.1 at 159.421 kb on - strand, within Xcc-8004.164.1 at 159.421 kb on - strand, within Xcc-8004.164.1 at 159.459 kb on + strand, within Xcc-8004.164.1 at 159.459 kb on + strand, within Xcc-8004.164.1 at 159.460 kb on - strand, within Xcc-8004.164.1 at 159.460 kb on - strand, within Xcc-8004.164.1 at 159.473 kb on + strand, within Xcc-8004.164.1 at 159.473 kb on + strand, within Xcc-8004.164.1 at 159.474 kb on - strand, within Xcc-8004.164.1 at 159.474 kb on - strand, within Xcc-8004.164.1 at 159.505 kb on - strand at 159.543 kb on - strand at 159.543 kb on - strand at 159.554 kb on + strand at 159.555 kb on - strand at 159.586 kb on + strand at 159.654 kb on - strand, within Xcc-8004.165.1 at 159.668 kb on - strand, within Xcc-8004.165.1 at 159.935 kb on + strand at 159.936 kb on - strand at 159.981 kb on + strand, within Xcc-8004.166.1 at 159.981 kb on + strand, within Xcc-8004.166.1 at 159.981 kb on + strand, within Xcc-8004.166.1 at 160.009 kb on + strand, within Xcc-8004.166.1 at 160.043 kb on - strand, within Xcc-8004.166.1 at 160.050 kb on - strand, within Xcc-8004.166.1 at 160.100 kb on + strand, within Xcc-8004.166.1 at 160.101 kb on - strand, within Xcc-8004.166.1 at 160.101 kb on - strand, within Xcc-8004.166.1 at 160.101 kb on - strand, within Xcc-8004.166.1 at 160.167 kb on - strand, within Xcc-8004.166.1 at 160.167 kb on - strand, within Xcc-8004.166.1 at 160.169 kb on + strand, within Xcc-8004.166.1 at 160.170 kb on - strand, within Xcc-8004.166.1 at 160.255 kb on + strand at 160.280 kb on + strand at 160.306 kb on - strand at 160.306 kb on - strand at 160.481 kb on + strand at 160.487 kb on + strand at 160.527 kb on + strand at 160.527 kb on + strand at 160.527 kb on + strand at 160.528 kb on - strand at 160.528 kb on - strand at 160.558 kb on + strand at 160.590 kb on - strand at 160.596 kb on - strand at 160.637 kb on - strand at 160.648 kb on + strand at 160.685 kb on + strand at 160.685 kb on + strand at 160.686 kb on - strand at 160.686 kb on - strand at 160.824 kb on + strand, within Xcc-8004.168.1 at 160.824 kb on + strand, within Xcc-8004.168.1 at 160.824 kb on + strand, within Xcc-8004.168.1 at 160.825 kb on - strand, within Xcc-8004.168.1 at 160.825 kb on - strand, within Xcc-8004.168.1 at 160.827 kb on + strand, within Xcc-8004.168.1 at 160.828 kb on - strand, within Xcc-8004.168.1 at 160.842 kb on - strand, within Xcc-8004.168.1 at 160.847 kb on + strand, within Xcc-8004.168.1 at 160.847 kb on + strand, within Xcc-8004.168.1 at 160.851 kb on + strand, within Xcc-8004.168.1 at 160.851 kb on + strand, within Xcc-8004.168.1 at 160.851 kb on + strand, within Xcc-8004.168.1 at 160.851 kb on + strand, within Xcc-8004.168.1 at 160.852 kb on - strand, within Xcc-8004.168.1 at 160.852 kb on - strand, within Xcc-8004.168.1 at 160.853 kb on + strand, within Xcc-8004.168.1 at 160.853 kb on + strand, within Xcc-8004.168.1 at 160.853 kb on + strand, within Xcc-8004.168.1 at 160.854 kb on - strand, within Xcc-8004.168.1 at 160.854 kb on - strand, within Xcc-8004.168.1 at 160.854 kb on - strand, within Xcc-8004.168.1 at 160.854 kb on - strand, within Xcc-8004.168.1 at 160.854 kb on - strand, within Xcc-8004.168.1 at 160.854 kb on - strand, within Xcc-8004.168.1 at 160.919 kb on + strand, within Xcc-8004.168.1 at 160.919 kb on + strand, within Xcc-8004.168.1 at 160.920 kb on - strand, within Xcc-8004.168.1 at 160.926 kb on + strand, within Xcc-8004.168.1 at 160.926 kb on + strand, within Xcc-8004.168.1 at 160.927 kb on - strand, within Xcc-8004.168.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 158,764 + +0.4 158,962 + -0.6 158,962 + -0.8 158,962 + +0.2 158,962 + -0.2 158,963 - +0.3 158,963 - +0.0 159,057 - +0.5 159,152 + +1.1 159,152 + -0.3 159,152 + -0.8 159,153 - +0.2 159,153 - -0.1 159,153 - -0.0 159,153 - +0.3 159,153 - +0.3 159,153 - +1.0 159,253 + +0.8 159,253 + +0.2 159,254 - +0.5 159,378 - Xcc-8004.164.1 0.39 -0.5 159,421 - Xcc-8004.164.1 0.59 +0.4 159,421 - Xcc-8004.164.1 0.59 -0.8 159,459 + Xcc-8004.164.1 0.77 -0.9 159,459 + Xcc-8004.164.1 0.77 -0.9 159,460 - Xcc-8004.164.1 0.78 -0.6 159,460 - Xcc-8004.164.1 0.78 -0.6 159,473 + Xcc-8004.164.1 0.84 -1.0 159,473 + Xcc-8004.164.1 0.84 +1.0 159,474 - Xcc-8004.164.1 0.84 -0.1 159,474 - Xcc-8004.164.1 0.84 +0.1 159,505 - +0.1 159,543 - +0.2 159,543 - -0.2 159,554 + -1.4 159,555 - -0.5 159,586 + -0.7 159,654 - Xcc-8004.165.1 0.23 -0.4 159,668 - Xcc-8004.165.1 0.26 -1.2 159,935 + +0.5 159,936 - +0.0 159,981 + Xcc-8004.166.1 0.13 -0.4 159,981 + Xcc-8004.166.1 0.13 -0.9 159,981 + Xcc-8004.166.1 0.13 -0.2 160,009 + Xcc-8004.166.1 0.24 -1.2 160,043 - Xcc-8004.166.1 0.37 -0.5 160,050 - Xcc-8004.166.1 0.40 -0.4 160,100 + Xcc-8004.166.1 0.59 +1.8 160,101 - Xcc-8004.166.1 0.60 +0.4 160,101 - Xcc-8004.166.1 0.60 -0.3 160,101 - Xcc-8004.166.1 0.60 -0.4 160,167 - Xcc-8004.166.1 0.85 -1.4 160,167 - Xcc-8004.166.1 0.85 -0.0 160,169 + Xcc-8004.166.1 0.86 -0.2 160,170 - Xcc-8004.166.1 0.86 -0.1 160,255 + -0.3 160,280 + -0.4 160,306 - -0.6 160,306 - -1.1 160,481 + -1.2 160,487 + -0.1 160,527 + -0.1 160,527 + +0.7 160,527 + +0.0 160,528 - +0.4 160,528 - +0.1 160,558 + -0.6 160,590 - +0.0 160,596 - -0.3 160,637 - +0.4 160,648 + -1.5 160,685 + +0.2 160,685 + +0.6 160,686 - -0.2 160,686 - -0.7 160,824 + Xcc-8004.168.1 0.16 +0.6 160,824 + Xcc-8004.168.1 0.16 -1.0 160,824 + Xcc-8004.168.1 0.16 +0.4 160,825 - Xcc-8004.168.1 0.17 -0.1 160,825 - Xcc-8004.168.1 0.17 +1.9 160,827 + Xcc-8004.168.1 0.17 +0.3 160,828 - Xcc-8004.168.1 0.17 +1.0 160,842 - Xcc-8004.168.1 0.19 -0.5 160,847 + Xcc-8004.168.1 0.20 -1.2 160,847 + Xcc-8004.168.1 0.20 +0.7 160,851 + Xcc-8004.168.1 0.20 -0.5 160,851 + Xcc-8004.168.1 0.20 +0.7 160,851 + Xcc-8004.168.1 0.20 -0.2 160,851 + Xcc-8004.168.1 0.20 -0.2 160,852 - Xcc-8004.168.1 0.20 -0.1 160,852 - Xcc-8004.168.1 0.20 +0.7 160,853 + Xcc-8004.168.1 0.21 -1.2 160,853 + Xcc-8004.168.1 0.21 -1.1 160,853 + Xcc-8004.168.1 0.21 -0.3 160,854 - Xcc-8004.168.1 0.21 +0.5 160,854 - Xcc-8004.168.1 0.21 -0.8 160,854 - Xcc-8004.168.1 0.21 -0.0 160,854 - Xcc-8004.168.1 0.21 -1.0 160,854 - Xcc-8004.168.1 0.21 -0.1 160,854 - Xcc-8004.168.1 0.21 +1.3 160,919 + Xcc-8004.168.1 0.30 -0.9 160,919 + Xcc-8004.168.1 0.30 +0.9 160,920 - Xcc-8004.168.1 0.30 +0.7 160,926 + Xcc-8004.168.1 0.31 +0.1 160,926 + Xcc-8004.168.1 0.31 +0.1 160,927 - Xcc-8004.168.1 0.31 -1.1
Or see this region's nucleotide sequence