Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1559.1 and Xcc-8004.1561.1 are separated by 32 nucleotides Xcc-8004.1561.1 and Xcc-8004.1562.1 overlap by 4 nucleotides Xcc-8004.1562.1 and Xcc-8004.1563.1 are separated by 34 nucleotides Xcc-8004.1563.1 and Xcc-8004.1564.1 overlap by 4 nucleotides
Xcc-8004.1559.1: Xcc-8004.1559.1 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 1,499,366 to 1,500,784
Xcc-8004.1559.1
Xcc-8004.1561.1: Xcc-8004.1561.1 - ADP compounds hydrolase NudE (EC 3.6.1.-), at 1,500,817 to 1,501,374
Xcc-8004.1561.1
Xcc-8004.1562.1: Xcc-8004.1562.1 - 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7), at 1,501,371 to 1,502,171
Xcc-8004.1562.1
Xcc-8004.1563.1: Xcc-8004.1563.1 - Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8), at 1,502,206 to 1,503,030
Xcc-8004.1563.1
Xcc-8004.1564.1: Xcc-8004.1564.1 - Protein of unknown function UPF0060, at 1,503,027 to 1,503,362
Xcc-8004.1564.1
Position (kb) 1501
1502
1503 Strain fitness (log2 ratio) -2
-1
0
1 at 1500.385 kb on - strand, within Xcc-8004.1559.1 at 1500.588 kb on + strand, within Xcc-8004.1559.1 at 1500.589 kb on - strand, within Xcc-8004.1559.1 at 1500.651 kb on - strand at 1500.651 kb on - strand at 1500.752 kb on + strand at 1500.790 kb on + strand at 1500.790 kb on + strand at 1500.790 kb on + strand at 1500.791 kb on - strand at 1500.796 kb on - strand at 1500.931 kb on + strand, within Xcc-8004.1561.1 at 1500.932 kb on - strand, within Xcc-8004.1561.1 at 1501.016 kb on - strand, within Xcc-8004.1561.1 at 1501.037 kb on - strand, within Xcc-8004.1561.1 at 1501.124 kb on - strand, within Xcc-8004.1561.1 at 1501.170 kb on + strand, within Xcc-8004.1561.1 at 1501.170 kb on + strand, within Xcc-8004.1561.1 at 1501.170 kb on + strand, within Xcc-8004.1561.1 at 1501.171 kb on - strand, within Xcc-8004.1561.1 at 1501.171 kb on - strand, within Xcc-8004.1561.1 at 1501.171 kb on - strand, within Xcc-8004.1561.1 at 1501.171 kb on - strand, within Xcc-8004.1561.1 at 1501.174 kb on + strand, within Xcc-8004.1561.1 at 1501.174 kb on + strand, within Xcc-8004.1561.1 at 1501.174 kb on + strand, within Xcc-8004.1561.1 at 1501.174 kb on + strand, within Xcc-8004.1561.1 at 1501.174 kb on + strand, within Xcc-8004.1561.1 at 1501.174 kb on + strand, within Xcc-8004.1561.1 at 1501.175 kb on - strand, within Xcc-8004.1561.1 at 1501.175 kb on - strand, within Xcc-8004.1561.1 at 1501.175 kb on - strand, within Xcc-8004.1561.1 at 1501.175 kb on - strand, within Xcc-8004.1561.1 at 1501.175 kb on - strand, within Xcc-8004.1561.1 at 1501.176 kb on + strand, within Xcc-8004.1561.1 at 1501.176 kb on + strand, within Xcc-8004.1561.1 at 1501.176 kb on + strand, within Xcc-8004.1561.1 at 1501.177 kb on - strand, within Xcc-8004.1561.1 at 1501.177 kb on - strand, within Xcc-8004.1561.1 at 1501.177 kb on - strand, within Xcc-8004.1561.1 at 1501.177 kb on - strand, within Xcc-8004.1561.1 at 1501.177 kb on - strand, within Xcc-8004.1561.1 at 1501.611 kb on + strand, within Xcc-8004.1562.1 at 1501.624 kb on - strand, within Xcc-8004.1562.1 at 1501.624 kb on - strand, within Xcc-8004.1562.1 at 1501.624 kb on - strand, within Xcc-8004.1562.1 at 1501.981 kb on - strand, within Xcc-8004.1562.1 at 1502.169 kb on + strand at 1502.169 kb on + strand at 1502.169 kb on + strand at 1502.169 kb on + strand at 1502.169 kb on + strand at 1502.170 kb on - strand at 1502.170 kb on - strand at 1502.170 kb on - strand at 1502.170 kb on - strand at 1502.170 kb on - strand at 1502.326 kb on + strand, within Xcc-8004.1563.1 at 1502.326 kb on + strand, within Xcc-8004.1563.1 at 1502.344 kb on + strand, within Xcc-8004.1563.1 at 1502.345 kb on - strand, within Xcc-8004.1563.1 at 1502.932 kb on + strand, within Xcc-8004.1563.1 at 1502.932 kb on + strand, within Xcc-8004.1563.1 at 1502.932 kb on + strand, within Xcc-8004.1563.1 at 1502.932 kb on + strand, within Xcc-8004.1563.1 at 1502.932 kb on + strand, within Xcc-8004.1563.1 at 1502.932 kb on + strand, within Xcc-8004.1563.1 at 1502.933 kb on - strand, within Xcc-8004.1563.1 at 1502.933 kb on - strand, within Xcc-8004.1563.1 at 1502.933 kb on - strand, within Xcc-8004.1563.1 at 1503.093 kb on + strand, within Xcc-8004.1564.1 at 1503.102 kb on + strand, within Xcc-8004.1564.1 at 1503.103 kb on - strand, within Xcc-8004.1564.1 at 1503.103 kb on - strand, within Xcc-8004.1564.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 1,500,385 - Xcc-8004.1559.1 0.72 -0.3 1,500,588 + Xcc-8004.1559.1 0.86 -1.4 1,500,589 - Xcc-8004.1559.1 0.86 -1.0 1,500,651 - -0.4 1,500,651 - +0.1 1,500,752 + -2.2 1,500,790 + +1.5 1,500,790 + -1.8 1,500,790 + -0.5 1,500,791 - +1.2 1,500,796 - -0.4 1,500,931 + Xcc-8004.1561.1 0.20 +0.4 1,500,932 - Xcc-8004.1561.1 0.21 +1.5 1,501,016 - Xcc-8004.1561.1 0.36 -0.3 1,501,037 - Xcc-8004.1561.1 0.39 -0.5 1,501,124 - Xcc-8004.1561.1 0.55 +0.6 1,501,170 + Xcc-8004.1561.1 0.63 -0.1 1,501,170 + Xcc-8004.1561.1 0.63 +1.6 1,501,170 + Xcc-8004.1561.1 0.63 -1.1 1,501,171 - Xcc-8004.1561.1 0.63 -0.3 1,501,171 - Xcc-8004.1561.1 0.63 -0.9 1,501,171 - Xcc-8004.1561.1 0.63 +0.5 1,501,171 - Xcc-8004.1561.1 0.63 -0.1 1,501,174 + Xcc-8004.1561.1 0.64 -0.4 1,501,174 + Xcc-8004.1561.1 0.64 -0.3 1,501,174 + Xcc-8004.1561.1 0.64 +0.5 1,501,174 + Xcc-8004.1561.1 0.64 -0.6 1,501,174 + Xcc-8004.1561.1 0.64 -0.3 1,501,174 + Xcc-8004.1561.1 0.64 -0.6 1,501,175 - Xcc-8004.1561.1 0.64 -0.9 1,501,175 - Xcc-8004.1561.1 0.64 -0.7 1,501,175 - Xcc-8004.1561.1 0.64 -1.4 1,501,175 - Xcc-8004.1561.1 0.64 -1.3 1,501,175 - Xcc-8004.1561.1 0.64 -0.0 1,501,176 + Xcc-8004.1561.1 0.64 -0.3 1,501,176 + Xcc-8004.1561.1 0.64 -0.1 1,501,176 + Xcc-8004.1561.1 0.64 +0.4 1,501,177 - Xcc-8004.1561.1 0.65 -1.0 1,501,177 - Xcc-8004.1561.1 0.65 -1.5 1,501,177 - Xcc-8004.1561.1 0.65 -1.0 1,501,177 - Xcc-8004.1561.1 0.65 -0.7 1,501,177 - Xcc-8004.1561.1 0.65 -0.4 1,501,611 + Xcc-8004.1562.1 0.30 -1.1 1,501,624 - Xcc-8004.1562.1 0.32 -2.3 1,501,624 - Xcc-8004.1562.1 0.32 +0.0 1,501,624 - Xcc-8004.1562.1 0.32 -0.2 1,501,981 - Xcc-8004.1562.1 0.76 -1.0 1,502,169 + -0.2 1,502,169 + +0.1 1,502,169 + -0.7 1,502,169 + -0.0 1,502,169 + -1.8 1,502,170 - +0.0 1,502,170 - +0.2 1,502,170 - -0.6 1,502,170 - -1.3 1,502,170 - -0.7 1,502,326 + Xcc-8004.1563.1 0.15 -1.0 1,502,326 + Xcc-8004.1563.1 0.15 -0.2 1,502,344 + Xcc-8004.1563.1 0.17 -1.4 1,502,345 - Xcc-8004.1563.1 0.17 -0.4 1,502,932 + Xcc-8004.1563.1 0.88 -0.0 1,502,932 + Xcc-8004.1563.1 0.88 +0.0 1,502,932 + Xcc-8004.1563.1 0.88 -0.2 1,502,932 + Xcc-8004.1563.1 0.88 +0.6 1,502,932 + Xcc-8004.1563.1 0.88 -0.8 1,502,932 + Xcc-8004.1563.1 0.88 -0.5 1,502,933 - Xcc-8004.1563.1 0.88 -0.8 1,502,933 - Xcc-8004.1563.1 0.88 -1.4 1,502,933 - Xcc-8004.1563.1 0.88 -0.0 1,503,093 + Xcc-8004.1564.1 0.20 -1.9 1,503,102 + Xcc-8004.1564.1 0.22 -2.7 1,503,103 - Xcc-8004.1564.1 0.23 -0.1 1,503,103 - Xcc-8004.1564.1 0.23 -0.9
Or see this region's nucleotide sequence