Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1056.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1055.1 and Xcc-8004.1056.1 are separated by 199 nucleotidesXcc-8004.1056.1 and Xcc-8004.1057.1 overlap by 4 nucleotides Xcc-8004.1055.1: Xcc-8004.1055.1 - hypothetical protein, at 1,006,399 to 1,007,040 Xcc-8004.1055.1 Xcc-8004.1056.1: Xcc-8004.1056.1 - 2-isopropylmalate synthase (EC 2.3.3.13), at 1,007,240 to 1,008,802 Xcc-8004.1056.1 Xcc-8004.1057.1: Xcc-8004.1057.1 - Threonine dehydratase (EC 4.3.1.19), at 1,008,799 to 1,009,974 Xcc-8004.1057.1 Position (kb) 1007 1008 1009Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1006.347 kb on + strandat 1006.348 kb on - strandat 1006.348 kb on - strandat 1006.359 kb on + strandat 1006.359 kb on + strandat 1006.360 kb on - strandat 1006.360 kb on - strandat 1006.571 kb on + strand, within Xcc-8004.1055.1at 1006.572 kb on - strand, within Xcc-8004.1055.1at 1006.572 kb on - strand, within Xcc-8004.1055.1at 1006.588 kb on - strand, within Xcc-8004.1055.1at 1006.652 kb on + strand, within Xcc-8004.1055.1at 1006.670 kb on + strand, within Xcc-8004.1055.1at 1006.671 kb on - strand, within Xcc-8004.1055.1at 1006.671 kb on - strand, within Xcc-8004.1055.1at 1006.671 kb on - strand, within Xcc-8004.1055.1at 1006.674 kb on + strand, within Xcc-8004.1055.1at 1006.747 kb on - strand, within Xcc-8004.1055.1at 1006.771 kb on - strand, within Xcc-8004.1055.1at 1006.956 kb on - strand, within Xcc-8004.1055.1at 1006.956 kb on - strand, within Xcc-8004.1055.1at 1007.178 kb on + strandat 1007.178 kb on + strandat 1007.179 kb on - strandat 1007.179 kb on - strandat 1007.179 kb on - strandat 1007.200 kb on + strandat 1007.226 kb on - strandat 1007.367 kb on + strandat 1007.367 kb on + strandat 1007.368 kb on - strandat 1007.430 kb on - strand, within Xcc-8004.1056.1at 1007.430 kb on - strand, within Xcc-8004.1056.1at 1007.430 kb on - strand, within Xcc-8004.1056.1at 1007.438 kb on + strand, within Xcc-8004.1056.1at 1007.438 kb on + strand, within Xcc-8004.1056.1at 1007.446 kb on - strand, within Xcc-8004.1056.1at 1007.745 kb on + strand, within Xcc-8004.1056.1at 1007.850 kb on + strand, within Xcc-8004.1056.1at 1007.851 kb on - strand, within Xcc-8004.1056.1at 1007.995 kb on + strand, within Xcc-8004.1056.1at 1008.018 kb on + strand, within Xcc-8004.1056.1at 1008.387 kb on + strand, within Xcc-8004.1056.1at 1008.388 kb on - strand, within Xcc-8004.1056.1at 1008.817 kb on + strandat 1008.817 kb on + strandat 1008.868 kb on - strandat 1008.922 kb on - strand, within Xcc-8004.1057.1at 1008.996 kb on + strand, within Xcc-8004.1057.1at 1008.999 kb on + strand, within Xcc-8004.1057.1at 1008.999 kb on + strand, within Xcc-8004.1057.1at 1009.000 kb on - strand, within Xcc-8004.1057.1at 1009.023 kb on + strand, within Xcc-8004.1057.1at 1009.023 kb on + strand, within Xcc-8004.1057.1at 1009.023 kb on + strand, within Xcc-8004.1057.1at 1009.024 kb on - strand, within Xcc-8004.1057.1at 1009.024 kb on - strand, within Xcc-8004.1057.1at 1009.024 kb on - strand, within Xcc-8004.1057.1at 1009.024 kb on - strand, within Xcc-8004.1057.1at 1009.024 kb on - strand, within Xcc-8004.1057.1at 1009.309 kb on + strand, within Xcc-8004.1057.1at 1009.310 kb on - strand, within Xcc-8004.1057.1at 1009.310 kb on - strand, within Xcc-8004.1057.1at 1009.310 kb on - strand, within Xcc-8004.1057.1at 1009.514 kb on + strand, within Xcc-8004.1057.1at 1009.514 kb on + strand, within Xcc-8004.1057.1at 1009.514 kb on + strand, within Xcc-8004.1057.1at 1009.514 kb on + strand, within Xcc-8004.1057.1at 1009.515 kb on - strand, within Xcc-8004.1057.1at 1009.515 kb on - strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.730 kb on - strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.737 kb on - strand, within Xcc-8004.1057.1at 1009.737 kb on - strand, within Xcc-8004.1057.1at 1009.737 kb on - strand, within Xcc-8004.1057.1at 1009.793 kb on + strand, within Xcc-8004.1057.1at 1009.794 kb on - strand, within Xcc-8004.1057.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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1,006,347 + +0.8
1,006,348 - +0.3
1,006,348 - +0.5
1,006,359 + +0.4
1,006,359 + -1.1
1,006,360 - -0.5
1,006,360 - +1.9
1,006,571 + Xcc-8004.1055.1 0.27 +0.1
1,006,572 - Xcc-8004.1055.1 0.27 -0.2
1,006,572 - Xcc-8004.1055.1 0.27 +0.5
1,006,588 - Xcc-8004.1055.1 0.29 -1.0
1,006,652 + Xcc-8004.1055.1 0.39 -0.1
1,006,670 + Xcc-8004.1055.1 0.42 -0.0
1,006,671 - Xcc-8004.1055.1 0.42 +0.1
1,006,671 - Xcc-8004.1055.1 0.42 +0.7
1,006,671 - Xcc-8004.1055.1 0.42 +0.5
1,006,674 + Xcc-8004.1055.1 0.43 +0.7
1,006,747 - Xcc-8004.1055.1 0.54 -1.0
1,006,771 - Xcc-8004.1055.1 0.58 +0.1
1,006,956 - Xcc-8004.1055.1 0.87 +0.5
1,006,956 - Xcc-8004.1055.1 0.87 +0.1
1,007,178 + -1.3
1,007,178 + -0.0
1,007,179 - -0.1
1,007,179 - +0.3
1,007,179 - -0.3
1,007,200 + +0.5
1,007,226 - +0.9
1,007,367 + +1.1
1,007,367 + -0.0
1,007,368 - -0.2
1,007,430 - Xcc-8004.1056.1 0.12 -0.8
1,007,430 - Xcc-8004.1056.1 0.12 +0.4
1,007,430 - Xcc-8004.1056.1 0.12 -0.5
1,007,438 + Xcc-8004.1056.1 0.13 -2.5
1,007,438 + Xcc-8004.1056.1 0.13 -3.4
1,007,446 - Xcc-8004.1056.1 0.13 -0.1
1,007,745 + Xcc-8004.1056.1 0.32 -2.8
1,007,850 + Xcc-8004.1056.1 0.39 -3.6
1,007,851 - Xcc-8004.1056.1 0.39 -2.6
1,007,995 + Xcc-8004.1056.1 0.48 -3.5
1,008,018 + Xcc-8004.1056.1 0.50 -4.2
1,008,387 + Xcc-8004.1056.1 0.73 -2.0
1,008,388 - Xcc-8004.1056.1 0.73 -4.0
1,008,817 + -5.2
1,008,817 + -3.6
1,008,868 - -0.3
1,008,922 - Xcc-8004.1057.1 0.10 -0.1
1,008,996 + Xcc-8004.1057.1 0.17 -2.3
1,008,999 + Xcc-8004.1057.1 0.17 -2.1
1,008,999 + Xcc-8004.1057.1 0.17 -0.3
1,009,000 - Xcc-8004.1057.1 0.17 -0.6
1,009,023 + Xcc-8004.1057.1 0.19 -1.3
1,009,023 + Xcc-8004.1057.1 0.19 -2.4
1,009,023 + Xcc-8004.1057.1 0.19 -3.8
1,009,024 - Xcc-8004.1057.1 0.19 -1.1
1,009,024 - Xcc-8004.1057.1 0.19 -0.4
1,009,024 - Xcc-8004.1057.1 0.19 -0.2
1,009,024 - Xcc-8004.1057.1 0.19 +1.4
1,009,024 - Xcc-8004.1057.1 0.19 -1.8
1,009,309 + Xcc-8004.1057.1 0.43 -1.4
1,009,310 - Xcc-8004.1057.1 0.43 -1.1
1,009,310 - Xcc-8004.1057.1 0.43 +0.3
1,009,310 - Xcc-8004.1057.1 0.43 -0.8
1,009,514 + Xcc-8004.1057.1 0.61 -0.4
1,009,514 + Xcc-8004.1057.1 0.61 -1.4
1,009,514 + Xcc-8004.1057.1 0.61 -1.4
1,009,514 + Xcc-8004.1057.1 0.61 +0.3
1,009,515 - Xcc-8004.1057.1 0.61 -0.1
1,009,515 - Xcc-8004.1057.1 0.61 +0.5
1,009,729 + Xcc-8004.1057.1 0.79 -0.1
1,009,729 + Xcc-8004.1057.1 0.79 -1.1
1,009,729 + Xcc-8004.1057.1 0.79 +0.2
1,009,729 + Xcc-8004.1057.1 0.79 -0.9
1,009,729 + Xcc-8004.1057.1 0.79 -1.7
1,009,729 + Xcc-8004.1057.1 0.79 +1.5
1,009,730 - Xcc-8004.1057.1 0.79 -0.2
1,009,736 + Xcc-8004.1057.1 0.80 -1.8
1,009,736 + Xcc-8004.1057.1 0.80 -0.9
1,009,736 + Xcc-8004.1057.1 0.80 -0.4
1,009,736 + Xcc-8004.1057.1 0.80 +1.3
1,009,736 + Xcc-8004.1057.1 0.80 -3.1
1,009,736 + Xcc-8004.1057.1 0.80 -1.1
1,009,736 + Xcc-8004.1057.1 0.80 -0.1
1,009,736 + Xcc-8004.1057.1 0.80 -0.6
1,009,736 + Xcc-8004.1057.1 0.80 -0.9
1,009,736 + Xcc-8004.1057.1 0.80 -1.0
1,009,737 - Xcc-8004.1057.1 0.80 -0.4
1,009,737 - Xcc-8004.1057.1 0.80 +0.0
1,009,737 - Xcc-8004.1057.1 0.80 -1.5
1,009,793 + Xcc-8004.1057.1 0.85 +0.1
1,009,794 - Xcc-8004.1057.1 0.85 +1.0

Or see this region's nucleotide sequence