Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_794 and Pf6N2E2_795 are separated by 195 nucleotides Pf6N2E2_795 and Pf6N2E2_796 are separated by 428 nucleotides
Pf6N2E2_794 - YD repeat protein, at 920,487 to 925,193
_794
Pf6N2E2_795 - ABC transporter ATP-binding protein uup, at 925,389 to 926,954
_795
Pf6N2E2_796 - Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO, at 927,383 to 928,276
_796
Position (kb) 925
926
927 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 924.426 kb on + strand, within Pf6N2E2_794 at 924.426 kb on + strand, within Pf6N2E2_794 at 924.426 kb on + strand, within Pf6N2E2_794 at 924.427 kb on - strand, within Pf6N2E2_794 at 924.446 kb on + strand, within Pf6N2E2_794 at 924.461 kb on + strand, within Pf6N2E2_794 at 924.461 kb on + strand, within Pf6N2E2_794 at 924.461 kb on + strand, within Pf6N2E2_794 at 924.461 kb on + strand, within Pf6N2E2_794 at 924.461 kb on + strand, within Pf6N2E2_794 at 924.461 kb on + strand, within Pf6N2E2_794 at 924.462 kb on - strand, within Pf6N2E2_794 at 924.462 kb on - strand, within Pf6N2E2_794 at 924.462 kb on - strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.516 kb on + strand, within Pf6N2E2_794 at 924.517 kb on - strand, within Pf6N2E2_794 at 924.517 kb on - strand, within Pf6N2E2_794 at 924.517 kb on - strand, within Pf6N2E2_794 at 924.517 kb on - strand, within Pf6N2E2_794 at 924.517 kb on - strand, within Pf6N2E2_794 at 924.517 kb on - strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.518 kb on + strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.519 kb on - strand, within Pf6N2E2_794 at 924.543 kb on + strand, within Pf6N2E2_794 at 924.543 kb on + strand, within Pf6N2E2_794 at 924.543 kb on + strand, within Pf6N2E2_794 at 924.615 kb on + strand, within Pf6N2E2_794 at 924.621 kb on + strand, within Pf6N2E2_794 at 924.621 kb on + strand, within Pf6N2E2_794 at 924.621 kb on + strand, within Pf6N2E2_794 at 924.622 kb on - strand, within Pf6N2E2_794 at 924.647 kb on - strand, within Pf6N2E2_794 at 924.706 kb on + strand, within Pf6N2E2_794 at 924.706 kb on + strand, within Pf6N2E2_794 at 924.707 kb on - strand, within Pf6N2E2_794 at 924.707 kb on - strand, within Pf6N2E2_794 at 924.824 kb on + strand at 924.941 kb on + strand at 924.986 kb on + strand at 924.986 kb on + strand at 925.038 kb on + strand at 925.039 kb on - strand at 925.046 kb on + strand at 925.064 kb on + strand at 925.064 kb on + strand at 925.064 kb on + strand at 925.064 kb on + strand at 925.065 kb on - strand at 925.077 kb on + strand at 925.077 kb on + strand at 925.078 kb on - strand at 925.078 kb on - strand at 925.078 kb on - strand at 925.108 kb on + strand at 925.108 kb on + strand at 925.108 kb on + strand at 925.108 kb on + strand at 925.108 kb on + strand at 925.109 kb on - strand at 925.109 kb on - strand at 925.112 kb on + strand at 925.112 kb on + strand at 925.112 kb on + strand at 925.112 kb on + strand at 925.112 kb on + strand at 925.113 kb on - strand at 925.113 kb on - strand at 925.113 kb on - strand at 925.113 kb on - strand at 925.113 kb on - strand at 925.113 kb on - strand at 925.116 kb on + strand at 925.116 kb on + strand at 925.116 kb on + strand at 925.116 kb on + strand at 925.116 kb on + strand at 925.116 kb on + strand at 925.117 kb on - strand at 925.117 kb on - strand at 925.117 kb on - strand at 925.118 kb on + strand at 925.118 kb on + strand at 925.118 kb on + strand at 925.119 kb on - strand at 925.141 kb on + strand at 925.160 kb on - strand at 925.160 kb on - strand at 925.175 kb on + strand at 925.175 kb on + strand at 925.175 kb on + strand at 925.176 kb on - strand at 925.176 kb on - strand at 925.197 kb on + strand at 925.319 kb on + strand at 925.320 kb on - strand at 925.354 kb on - strand at 925.354 kb on - strand at 925.354 kb on - strand at 925.390 kb on + strand at 925.390 kb on + strand at 925.390 kb on + strand at 925.391 kb on - strand at 925.391 kb on - strand at 925.391 kb on - strand at 925.391 kb on - strand at 925.417 kb on + strand at 925.426 kb on + strand at 925.426 kb on + strand at 925.426 kb on + strand at 925.426 kb on + strand at 925.427 kb on - strand at 925.427 kb on - strand at 925.427 kb on - strand at 925.534 kb on + strand at 925.819 kb on + strand, within Pf6N2E2_795 at 925.819 kb on + strand, within Pf6N2E2_795 at 925.819 kb on + strand, within Pf6N2E2_795 at 926.260 kb on + strand, within Pf6N2E2_795 at 926.260 kb on + strand, within Pf6N2E2_795 at 926.260 kb on + strand, within Pf6N2E2_795 at 926.260 kb on + strand, within Pf6N2E2_795 at 926.261 kb on - strand, within Pf6N2E2_795 at 926.261 kb on - strand, within Pf6N2E2_795 at 926.261 kb on - strand, within Pf6N2E2_795 at 926.261 kb on - strand, within Pf6N2E2_795 at 926.269 kb on + strand, within Pf6N2E2_795 at 926.269 kb on + strand, within Pf6N2E2_795 at 926.594 kb on - strand, within Pf6N2E2_795 at 926.964 kb on - strand at 926.964 kb on - strand at 926.964 kb on - strand at 926.969 kb on + strand at 926.970 kb on - strand at 926.970 kb on - strand at 926.984 kb on + strand at 927.006 kb on - strand at 927.006 kb on - strand at 927.009 kb on + strand at 927.009 kb on + strand at 927.010 kb on - strand at 927.023 kb on + strand at 927.035 kb on - strand at 927.102 kb on - strand at 927.119 kb on - strand at 927.138 kb on - strand at 927.185 kb on + strand at 927.186 kb on - strand at 927.186 kb on - strand at 927.188 kb on + strand at 927.188 kb on + strand at 927.188 kb on + strand at 927.189 kb on - strand at 927.189 kb on - strand at 927.189 kb on - strand at 927.205 kb on - strand at 927.205 kb on - strand at 927.232 kb on + strand at 927.233 kb on - strand at 927.233 kb on - strand at 927.293 kb on + strand at 927.294 kb on - strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.408 kb on - strand at 927.408 kb on - strand at 927.408 kb on - strand at 927.425 kb on + strand at 927.426 kb on - strand at 927.455 kb on - strand at 927.515 kb on + strand, within Pf6N2E2_796 at 927.515 kb on + strand, within Pf6N2E2_796 at 927.515 kb on + strand, within Pf6N2E2_796 at 927.515 kb on + strand, within Pf6N2E2_796 at 927.516 kb on - strand, within Pf6N2E2_796 at 927.753 kb on + strand, within Pf6N2E2_796 at 927.753 kb on + strand, within Pf6N2E2_796 at 927.753 kb on + strand, within Pf6N2E2_796 at 927.754 kb on - strand, within Pf6N2E2_796 at 927.754 kb on - strand, within Pf6N2E2_796 at 927.771 kb on + strand, within Pf6N2E2_796 at 927.852 kb on - strand, within Pf6N2E2_796 at 927.908 kb on + strand, within Pf6N2E2_796 at 927.908 kb on + strand, within Pf6N2E2_796 at 927.909 kb on - strand, within Pf6N2E2_796 at 927.932 kb on + strand, within Pf6N2E2_796 at 927.932 kb on + strand, within Pf6N2E2_796
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 924,426 + Pf6N2E2_794 0.84 +1.3 924,426 + Pf6N2E2_794 0.84 +0.8 924,426 + Pf6N2E2_794 0.84 -0.9 924,427 - Pf6N2E2_794 0.84 -1.5 924,446 + Pf6N2E2_794 0.84 +1.3 924,461 + Pf6N2E2_794 0.84 +0.5 924,461 + Pf6N2E2_794 0.84 +1.7 924,461 + Pf6N2E2_794 0.84 +0.1 924,461 + Pf6N2E2_794 0.84 -0.6 924,461 + Pf6N2E2_794 0.84 -0.3 924,461 + Pf6N2E2_794 0.84 +0.5 924,462 - Pf6N2E2_794 0.84 +0.4 924,462 - Pf6N2E2_794 0.84 -2.8 924,462 - Pf6N2E2_794 0.84 +0.3 924,516 + Pf6N2E2_794 0.86 -1.3 924,516 + Pf6N2E2_794 0.86 +0.7 924,516 + Pf6N2E2_794 0.86 -0.4 924,516 + Pf6N2E2_794 0.86 -0.3 924,516 + Pf6N2E2_794 0.86 -0.5 924,516 + Pf6N2E2_794 0.86 +0.3 924,516 + Pf6N2E2_794 0.86 -2.1 924,516 + Pf6N2E2_794 0.86 +0.5 924,516 + Pf6N2E2_794 0.86 +0.3 924,516 + Pf6N2E2_794 0.86 +0.5 924,517 - Pf6N2E2_794 0.86 -1.5 924,517 - Pf6N2E2_794 0.86 -0.5 924,517 - Pf6N2E2_794 0.86 +0.8 924,517 - Pf6N2E2_794 0.86 -1.7 924,517 - Pf6N2E2_794 0.86 -0.4 924,517 - Pf6N2E2_794 0.86 +0.1 924,518 + Pf6N2E2_794 0.86 -0.3 924,518 + Pf6N2E2_794 0.86 -0.8 924,518 + Pf6N2E2_794 0.86 +0.6 924,518 + Pf6N2E2_794 0.86 -1.3 924,518 + Pf6N2E2_794 0.86 +0.1 924,518 + Pf6N2E2_794 0.86 -0.2 924,518 + Pf6N2E2_794 0.86 -0.5 924,518 + Pf6N2E2_794 0.86 +0.2 924,518 + Pf6N2E2_794 0.86 -0.8 924,518 + Pf6N2E2_794 0.86 +0.2 924,518 + Pf6N2E2_794 0.86 +0.8 924,518 + Pf6N2E2_794 0.86 -2.0 924,519 - Pf6N2E2_794 0.86 -0.4 924,519 - Pf6N2E2_794 0.86 +1.4 924,519 - Pf6N2E2_794 0.86 -0.1 924,519 - Pf6N2E2_794 0.86 +1.3 924,519 - Pf6N2E2_794 0.86 -0.7 924,519 - Pf6N2E2_794 0.86 +1.2 924,519 - Pf6N2E2_794 0.86 -0.3 924,519 - Pf6N2E2_794 0.86 -0.8 924,519 - Pf6N2E2_794 0.86 -1.6 924,519 - Pf6N2E2_794 0.86 -0.2 924,519 - Pf6N2E2_794 0.86 +0.6 924,519 - Pf6N2E2_794 0.86 +0.1 924,519 - Pf6N2E2_794 0.86 -2.3 924,519 - Pf6N2E2_794 0.86 +0.7 924,519 - Pf6N2E2_794 0.86 +1.3 924,519 - Pf6N2E2_794 0.86 -0.8 924,543 + Pf6N2E2_794 0.86 +1.3 924,543 + Pf6N2E2_794 0.86 +0.4 924,543 + Pf6N2E2_794 0.86 -1.7 924,615 + Pf6N2E2_794 0.88 +3.5 924,621 + Pf6N2E2_794 0.88 +1.3 924,621 + Pf6N2E2_794 0.88 -0.2 924,621 + Pf6N2E2_794 0.88 +1.1 924,622 - Pf6N2E2_794 0.88 -2.4 924,647 - Pf6N2E2_794 0.88 -1.7 924,706 + Pf6N2E2_794 0.90 +0.0 924,706 + Pf6N2E2_794 0.90 +3.4 924,707 - Pf6N2E2_794 0.90 +2.6 924,707 - Pf6N2E2_794 0.90 +1.6 924,824 + -0.9 924,941 + -0.2 924,986 + +0.6 924,986 + +1.5 925,038 + +0.5 925,039 - +2.0 925,046 + -0.2 925,064 + +0.8 925,064 + +0.3 925,064 + -0.2 925,064 + +0.0 925,065 - +0.1 925,077 + +0.3 925,077 + +1.1 925,078 - +0.8 925,078 - -0.3 925,078 - -0.3 925,108 + -0.8 925,108 + -1.7 925,108 + +0.4 925,108 + +0.1 925,108 + +0.9 925,109 - +0.1 925,109 - +0.3 925,112 + +0.3 925,112 + -1.1 925,112 + +0.0 925,112 + -0.1 925,112 + +0.4 925,113 - -0.1 925,113 - -0.0 925,113 - -1.1 925,113 - -0.5 925,113 - +0.6 925,113 - -0.1 925,116 + +0.7 925,116 + -0.5 925,116 + -1.1 925,116 + +0.8 925,116 + -0.7 925,116 + +0.7 925,117 - -0.4 925,117 - -1.6 925,117 - +0.2 925,118 + +1.1 925,118 + -1.1 925,118 + -1.0 925,119 - +0.7 925,141 + -0.4 925,160 - +0.6 925,160 - +0.5 925,175 + -0.6 925,175 + -0.2 925,175 + -0.2 925,176 - +0.9 925,176 - -1.5 925,197 + -0.1 925,319 + -0.8 925,320 - +0.4 925,354 - -0.9 925,354 - -0.1 925,354 - -0.8 925,390 + -1.0 925,390 + +0.4 925,390 + -0.0 925,391 - -0.1 925,391 - -0.1 925,391 - +0.3 925,391 - -0.3 925,417 + -0.5 925,426 + -0.1 925,426 + -0.8 925,426 + +0.7 925,426 + -0.9 925,427 - +0.0 925,427 - +1.1 925,427 - -0.1 925,534 + +1.7 925,819 + Pf6N2E2_795 0.27 -2.3 925,819 + Pf6N2E2_795 0.27 +2.0 925,819 + Pf6N2E2_795 0.27 +0.5 926,260 + Pf6N2E2_795 0.56 +0.6 926,260 + Pf6N2E2_795 0.56 +1.3 926,260 + Pf6N2E2_795 0.56 +1.1 926,260 + Pf6N2E2_795 0.56 -0.4 926,261 - Pf6N2E2_795 0.56 -1.8 926,261 - Pf6N2E2_795 0.56 +0.9 926,261 - Pf6N2E2_795 0.56 +2.3 926,261 - Pf6N2E2_795 0.56 +0.7 926,269 + Pf6N2E2_795 0.56 -0.1 926,269 + Pf6N2E2_795 0.56 +2.2 926,594 - Pf6N2E2_795 0.77 -0.5 926,964 - -2.0 926,964 - +0.6 926,964 - +0.0 926,969 + +0.2 926,970 - +0.6 926,970 - -0.6 926,984 + +0.2 927,006 - -2.4 927,006 - +1.2 927,009 + -0.9 927,009 + +2.0 927,010 - -0.3 927,023 + -2.0 927,035 - +0.2 927,102 - -0.7 927,119 - +0.7 927,138 - -1.0 927,185 + -1.4 927,186 - +1.7 927,186 - -1.4 927,188 + -0.4 927,188 + -1.2 927,188 + -2.0 927,189 - +2.0 927,189 - +1.1 927,189 - -0.5 927,205 - -2.3 927,205 - -1.2 927,232 + -0.6 927,233 - +0.1 927,233 - +0.6 927,293 + +0.2 927,294 - -1.2 927,407 + +0.7 927,407 + -1.6 927,407 + -0.6 927,407 + +0.7 927,407 + -0.0 927,408 - -0.3 927,408 - +0.9 927,408 - +0.0 927,425 + -0.9 927,426 - -0.7 927,455 - -1.0 927,515 + Pf6N2E2_796 0.15 +1.2 927,515 + Pf6N2E2_796 0.15 -1.3 927,515 + Pf6N2E2_796 0.15 +1.0 927,515 + Pf6N2E2_796 0.15 -1.7 927,516 - Pf6N2E2_796 0.15 -2.2 927,753 + Pf6N2E2_796 0.41 -2.1 927,753 + Pf6N2E2_796 0.41 -0.4 927,753 + Pf6N2E2_796 0.41 +1.3 927,754 - Pf6N2E2_796 0.41 +0.9 927,754 - Pf6N2E2_796 0.41 -0.4 927,771 + Pf6N2E2_796 0.43 -1.0 927,852 - Pf6N2E2_796 0.52 -0.2 927,908 + Pf6N2E2_796 0.59 +0.2 927,908 + Pf6N2E2_796 0.59 -0.4 927,909 - Pf6N2E2_796 0.59 +0.4 927,932 + Pf6N2E2_796 0.61 +1.4 927,932 + Pf6N2E2_796 0.61 -1.1
Or see this region's nucleotide sequence