Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4932

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4931 and Pf6N2E2_4932 overlap by 18 nucleotidesPf6N2E2_4932 and Pf6N2E2_4933 are separated by 16 nucleotidesPf6N2E2_4933 and Pf6N2E2_4934 overlap by 4 nucleotides Pf6N2E2_4931 - 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7), at 5,683,828 to 5,685,726 _4931 Pf6N2E2_4932 - hypothetical protein, at 5,685,709 to 5,685,825 _4932 Pf6N2E2_4933 - Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29), at 5,685,842 to 5,686,729 _4933 Pf6N2E2_4934 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 5,686,726 to 5,686,968 _4934 Position (kb) 5685 5686Strain fitness (log2 ratio) -2 -1 0 1at 5685.740 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.742 kb on - strand, within Pf6N2E2_4932at 5685.746 kb on - strand, within Pf6N2E2_4932at 5685.746 kb on - strand, within Pf6N2E2_4932at 5685.746 kb on - strand, within Pf6N2E2_4932at 5685.748 kb on - strand, within Pf6N2E2_4932at 5685.766 kb on - strand, within Pf6N2E2_4932at 5685.766 kb on - strand, within Pf6N2E2_4932at 5685.766 kb on - strand, within Pf6N2E2_4932at 5685.766 kb on - strand, within Pf6N2E2_4932at 5685.766 kb on - strand, within Pf6N2E2_4932at 5685.821 kb on + strandat 5685.821 kb on + strandat 5685.822 kb on - strandat 5685.822 kb on - strandat 5685.822 kb on - strandat 5685.822 kb on - strandat 5685.822 kb on - strandat 5685.822 kb on - strandat 5685.822 kb on - strandat 5685.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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5,685,740 - Pf6N2E2_4932 0.26 -0.6
5,685,742 - Pf6N2E2_4932 0.28 -2.1
5,685,742 - Pf6N2E2_4932 0.28 +0.2
5,685,742 - Pf6N2E2_4932 0.28 -0.6
5,685,742 - Pf6N2E2_4932 0.28 -0.5
5,685,742 - Pf6N2E2_4932 0.28 -0.1
5,685,742 - Pf6N2E2_4932 0.28 -0.9
5,685,742 - Pf6N2E2_4932 0.28 -1.1
5,685,742 - Pf6N2E2_4932 0.28 -0.7
5,685,742 - Pf6N2E2_4932 0.28 +0.7
5,685,742 - Pf6N2E2_4932 0.28 -0.1
5,685,742 - Pf6N2E2_4932 0.28 -0.6
5,685,742 - Pf6N2E2_4932 0.28 +0.8
5,685,742 - Pf6N2E2_4932 0.28 -0.3
5,685,742 - Pf6N2E2_4932 0.28 -1.7
5,685,746 - Pf6N2E2_4932 0.32 -1.8
5,685,746 - Pf6N2E2_4932 0.32 -0.1
5,685,746 - Pf6N2E2_4932 0.32 -0.1
5,685,748 - Pf6N2E2_4932 0.33 -0.4
5,685,766 - Pf6N2E2_4932 0.49 +0.7
5,685,766 - Pf6N2E2_4932 0.49 +0.2
5,685,766 - Pf6N2E2_4932 0.49 -0.1
5,685,766 - Pf6N2E2_4932 0.49 -1.1
5,685,766 - Pf6N2E2_4932 0.49 -0.6
5,685,821 + -1.1
5,685,821 + -1.3
5,685,822 - -2.6
5,685,822 - -0.4
5,685,822 - -1.1
5,685,822 - -0.6
5,685,822 - +1.5
5,685,822 - +0.3
5,685,822 - -0.2
5,685,822 - -0.3

Or see this region's nucleotide sequence