Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2695

Experiment: sodium fluoride 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_2693 and Ga0059261_2694 are separated by 150 nucleotidesGa0059261_2694 and Ga0059261_2695 are separated by 55 nucleotidesGa0059261_2695 and Ga0059261_2696 are separated by 5 nucleotides Ga0059261_2693: Ga0059261_2693 - thymidylate synthase, at 2,802,544 to 2,803,338 _2693 Ga0059261_2694: Ga0059261_2694 - RadC-like JAB domain, at 2,803,489 to 2,803,887 _2694 Ga0059261_2695: Ga0059261_2695 - Methyltransferase domain, at 2,803,943 to 2,804,713 _2695 Ga0059261_2696: Ga0059261_2696 - bacterial peptide chain release factor 2 (bRF-2), at 2,804,719 to 2,805,846 _2696 Position (kb) 2803 2804 2805Strain fitness (log2 ratio) -1 0 1at 2803.352 kb on - strandat 2803.415 kb on + strandat 2803.415 kb on + strandat 2803.415 kb on + strandat 2803.416 kb on - strandat 2803.416 kb on - strandat 2803.416 kb on - strandat 2803.416 kb on - strandat 2803.416 kb on - strandat 2803.416 kb on - strandat 2803.597 kb on + strand, within Ga0059261_2694at 2803.597 kb on + strand, within Ga0059261_2694at 2803.598 kb on - strand, within Ga0059261_2694at 2803.841 kb on + strand, within Ga0059261_2694at 2803.841 kb on + strand, within Ga0059261_2694at 2803.842 kb on - strand, within Ga0059261_2694at 2803.842 kb on - strand, within Ga0059261_2694at 2803.885 kb on + strandat 2803.885 kb on + strandat 2803.885 kb on + strandat 2803.885 kb on + strandat 2803.885 kb on + strandat 2803.885 kb on + strandat 2803.885 kb on + strandat 2803.885 kb on + strandat 2803.885 kb on + strandat 2803.885 kb on + strandat 2803.886 kb on - strandat 2803.886 kb on - strandat 2803.886 kb on - strandat 2803.886 kb on - strandat 2803.944 kb on + strandat 2803.944 kb on + strandat 2803.945 kb on - strandat 2803.945 kb on - strandat 2804.065 kb on - strand, within Ga0059261_2695at 2804.106 kb on + strand, within Ga0059261_2695at 2804.106 kb on + strand, within Ga0059261_2695at 2804.239 kb on - strand, within Ga0059261_2695at 2804.258 kb on + strand, within Ga0059261_2695at 2804.259 kb on + strandat 2804.259 kb on + strand, within Ga0059261_2695at 2804.259 kb on + strand, within Ga0059261_2695at 2804.259 kb on + strand, within Ga0059261_2695at 2804.259 kb on + strand, within Ga0059261_2695at 2804.259 kb on + strand, within Ga0059261_2695at 2804.259 kb on + strand, within Ga0059261_2695at 2804.259 kb on + strand, within Ga0059261_2695at 2804.259 kb on + strand, within Ga0059261_2695at 2804.259 kb on + strand, within Ga0059261_2695at 2804.259 kb on + strand, within Ga0059261_2695at 2804.260 kb on - strand, within Ga0059261_2695at 2804.260 kb on - strand, within Ga0059261_2695at 2804.260 kb on - strand, within Ga0059261_2695at 2804.260 kb on - strand, within Ga0059261_2695at 2804.260 kb on - strand, within Ga0059261_2695at 2804.260 kb on - strand, within Ga0059261_2695at 2804.260 kb on - strand, within Ga0059261_2695at 2804.278 kb on + strand, within Ga0059261_2695at 2804.279 kb on - strand, within Ga0059261_2695at 2804.279 kb on - strand, within Ga0059261_2695at 2804.398 kb on + strand, within Ga0059261_2695at 2804.398 kb on + strand, within Ga0059261_2695at 2804.398 kb on + strand, within Ga0059261_2695at 2804.398 kb on + strand, within Ga0059261_2695at 2804.399 kb on - strand, within Ga0059261_2695at 2804.454 kb on + strand, within Ga0059261_2695at 2804.454 kb on + strand, within Ga0059261_2695at 2804.454 kb on + strand, within Ga0059261_2695at 2804.455 kb on - strand, within Ga0059261_2695at 2804.455 kb on - strand, within Ga0059261_2695at 2804.455 kb on - strand, within Ga0059261_2695at 2804.455 kb on - strand, within Ga0059261_2695at 2804.455 kb on - strand, within Ga0059261_2695at 2804.455 kb on - strand, within Ga0059261_2695at 2804.455 kb on - strand, within Ga0059261_2695at 2804.455 kb on - strand, within Ga0059261_2695at 2804.455 kb on - strand, within Ga0059261_2695at 2804.455 kb on - strand, within Ga0059261_2695at 2804.455 kb on - strand, within Ga0059261_2695at 2804.457 kb on + strand, within Ga0059261_2695at 2804.457 kb on + strand, within Ga0059261_2695at 2804.457 kb on + strand, within Ga0059261_2695at 2804.457 kb on + strand, within Ga0059261_2695at 2804.457 kb on + strand, within Ga0059261_2695at 2804.457 kb on + strand, within Ga0059261_2695at 2804.457 kb on + strand, within Ga0059261_2695at 2804.458 kb on - strand, within Ga0059261_2695at 2804.458 kb on - strand, within Ga0059261_2695at 2804.458 kb on - strand, within Ga0059261_2695at 2804.458 kb on - strand, within Ga0059261_2695

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 10 mM
remove
2,803,352 - +0.5
2,803,415 + -0.7
2,803,415 + +0.2
2,803,415 + -0.4
2,803,416 - +0.2
2,803,416 - +0.5
2,803,416 - +1.0
2,803,416 - +0.0
2,803,416 - -0.4
2,803,416 - +0.7
2,803,597 + Ga0059261_2694 0.27 -0.1
2,803,597 + Ga0059261_2694 0.27 -0.1
2,803,598 - Ga0059261_2694 0.27 -0.4
2,803,841 + Ga0059261_2694 0.88 -0.3
2,803,841 + Ga0059261_2694 0.88 +0.1
2,803,842 - Ga0059261_2694 0.88 +0.7
2,803,842 - Ga0059261_2694 0.88 -0.1
2,803,885 + -0.2
2,803,885 + +0.3
2,803,885 + -0.7
2,803,885 + +0.2
2,803,885 + -0.1
2,803,885 + +0.7
2,803,885 + -0.9
2,803,885 + -1.0
2,803,885 + -0.1
2,803,885 + -0.9
2,803,886 - +0.3
2,803,886 - -0.1
2,803,886 - -1.0
2,803,886 - -0.7
2,803,944 + -0.7
2,803,944 + +0.1
2,803,945 - -0.3
2,803,945 - +0.3
2,804,065 - Ga0059261_2695 0.16 -0.4
2,804,106 + Ga0059261_2695 0.21 -0.5
2,804,106 + Ga0059261_2695 0.21 -1.3
2,804,239 - Ga0059261_2695 0.38 +0.3
2,804,258 + Ga0059261_2695 0.41 -0.2
2,804,259 + +1.3
2,804,259 + Ga0059261_2695 0.41 -1.3
2,804,259 + Ga0059261_2695 0.41 +1.2
2,804,259 + Ga0059261_2695 0.41 +0.7
2,804,259 + Ga0059261_2695 0.41 +0.5
2,804,259 + Ga0059261_2695 0.41 +0.7
2,804,259 + Ga0059261_2695 0.41 +0.1
2,804,259 + Ga0059261_2695 0.41 +1.0
2,804,259 + Ga0059261_2695 0.41 +0.7
2,804,259 + Ga0059261_2695 0.41 -0.2
2,804,259 + Ga0059261_2695 0.41 -0.2
2,804,260 - Ga0059261_2695 0.41 -1.4
2,804,260 - Ga0059261_2695 0.41 +0.0
2,804,260 - Ga0059261_2695 0.41 +0.1
2,804,260 - Ga0059261_2695 0.41 +0.7
2,804,260 - Ga0059261_2695 0.41 +0.9
2,804,260 - Ga0059261_2695 0.41 +0.4
2,804,260 - Ga0059261_2695 0.41 +0.7
2,804,278 + Ga0059261_2695 0.43 +1.7
2,804,279 - Ga0059261_2695 0.44 +1.3
2,804,279 - Ga0059261_2695 0.44 -0.3
2,804,398 + Ga0059261_2695 0.59 -0.2
2,804,398 + Ga0059261_2695 0.59 +0.0
2,804,398 + Ga0059261_2695 0.59 +1.0
2,804,398 + Ga0059261_2695 0.59 -0.1
2,804,399 - Ga0059261_2695 0.59 +0.6
2,804,454 + Ga0059261_2695 0.66 +0.7
2,804,454 + Ga0059261_2695 0.66 -0.0
2,804,454 + Ga0059261_2695 0.66 +0.2
2,804,455 - Ga0059261_2695 0.66 -0.1
2,804,455 - Ga0059261_2695 0.66 +0.2
2,804,455 - Ga0059261_2695 0.66 +0.3
2,804,455 - Ga0059261_2695 0.66 +0.0
2,804,455 - Ga0059261_2695 0.66 +0.2
2,804,455 - Ga0059261_2695 0.66 -1.7
2,804,455 - Ga0059261_2695 0.66 +1.2
2,804,455 - Ga0059261_2695 0.66 +0.1
2,804,455 - Ga0059261_2695 0.66 +0.6
2,804,455 - Ga0059261_2695 0.66 +0.1
2,804,455 - Ga0059261_2695 0.66 -0.3
2,804,457 + Ga0059261_2695 0.67 +0.4
2,804,457 + Ga0059261_2695 0.67 +0.1
2,804,457 + Ga0059261_2695 0.67 -0.1
2,804,457 + Ga0059261_2695 0.67 +0.1
2,804,457 + Ga0059261_2695 0.67 -0.3
2,804,457 + Ga0059261_2695 0.67 +0.7
2,804,457 + Ga0059261_2695 0.67 +0.9
2,804,458 - Ga0059261_2695 0.67 +0.6
2,804,458 - Ga0059261_2695 0.67 +0.6
2,804,458 - Ga0059261_2695 0.67 -0.4
2,804,458 - Ga0059261_2695 0.67 -1.0

Or see this region's nucleotide sequence