Experiment: sodium fluoride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2693 and Ga0059261_2694 are separated by 150 nucleotides Ga0059261_2694 and Ga0059261_2695 are separated by 55 nucleotides Ga0059261_2695 and Ga0059261_2696 are separated by 5 nucleotides
Ga0059261_2693: Ga0059261_2693 - thymidylate synthase, at 2,802,544 to 2,803,338
_2693
Ga0059261_2694: Ga0059261_2694 - RadC-like JAB domain, at 2,803,489 to 2,803,887
_2694
Ga0059261_2695: Ga0059261_2695 - Methyltransferase domain, at 2,803,943 to 2,804,713
_2695
Ga0059261_2696: Ga0059261_2696 - bacterial peptide chain release factor 2 (bRF-2), at 2,804,719 to 2,805,846
_2696
Position (kb)
2803
2804
2805 Strain fitness (log2 ratio)
-1
0
1 at 2803.352 kb on - strand at 2803.415 kb on + strand at 2803.415 kb on + strand at 2803.415 kb on + strand at 2803.416 kb on - strand at 2803.416 kb on - strand at 2803.416 kb on - strand at 2803.416 kb on - strand at 2803.416 kb on - strand at 2803.416 kb on - strand at 2803.597 kb on + strand, within Ga0059261_2694 at 2803.597 kb on + strand, within Ga0059261_2694 at 2803.598 kb on - strand, within Ga0059261_2694 at 2803.841 kb on + strand, within Ga0059261_2694 at 2803.841 kb on + strand, within Ga0059261_2694 at 2803.842 kb on - strand, within Ga0059261_2694 at 2803.842 kb on - strand, within Ga0059261_2694 at 2803.885 kb on + strand at 2803.885 kb on + strand at 2803.885 kb on + strand at 2803.885 kb on + strand at 2803.885 kb on + strand at 2803.885 kb on + strand at 2803.885 kb on + strand at 2803.885 kb on + strand at 2803.885 kb on + strand at 2803.885 kb on + strand at 2803.886 kb on - strand at 2803.886 kb on - strand at 2803.886 kb on - strand at 2803.886 kb on - strand at 2803.944 kb on + strand at 2803.944 kb on + strand at 2803.945 kb on - strand at 2803.945 kb on - strand at 2804.065 kb on - strand, within Ga0059261_2695 at 2804.106 kb on + strand, within Ga0059261_2695 at 2804.106 kb on + strand, within Ga0059261_2695 at 2804.239 kb on - strand, within Ga0059261_2695 at 2804.258 kb on + strand, within Ga0059261_2695 at 2804.259 kb on + strand at 2804.259 kb on + strand, within Ga0059261_2695 at 2804.259 kb on + strand, within Ga0059261_2695 at 2804.259 kb on + strand, within Ga0059261_2695 at 2804.259 kb on + strand, within Ga0059261_2695 at 2804.259 kb on + strand, within Ga0059261_2695 at 2804.259 kb on + strand, within Ga0059261_2695 at 2804.259 kb on + strand, within Ga0059261_2695 at 2804.259 kb on + strand, within Ga0059261_2695 at 2804.259 kb on + strand, within Ga0059261_2695 at 2804.259 kb on + strand, within Ga0059261_2695 at 2804.260 kb on - strand, within Ga0059261_2695 at 2804.260 kb on - strand, within Ga0059261_2695 at 2804.260 kb on - strand, within Ga0059261_2695 at 2804.260 kb on - strand, within Ga0059261_2695 at 2804.260 kb on - strand, within Ga0059261_2695 at 2804.260 kb on - strand, within Ga0059261_2695 at 2804.260 kb on - strand, within Ga0059261_2695 at 2804.278 kb on + strand, within Ga0059261_2695 at 2804.279 kb on - strand, within Ga0059261_2695 at 2804.279 kb on - strand, within Ga0059261_2695 at 2804.398 kb on + strand, within Ga0059261_2695 at 2804.398 kb on + strand, within Ga0059261_2695 at 2804.398 kb on + strand, within Ga0059261_2695 at 2804.398 kb on + strand, within Ga0059261_2695 at 2804.399 kb on - strand, within Ga0059261_2695 at 2804.454 kb on + strand, within Ga0059261_2695 at 2804.454 kb on + strand, within Ga0059261_2695 at 2804.454 kb on + strand, within Ga0059261_2695 at 2804.455 kb on - strand, within Ga0059261_2695 at 2804.455 kb on - strand, within Ga0059261_2695 at 2804.455 kb on - strand, within Ga0059261_2695 at 2804.455 kb on - strand, within Ga0059261_2695 at 2804.455 kb on - strand, within Ga0059261_2695 at 2804.455 kb on - strand, within Ga0059261_2695 at 2804.455 kb on - strand, within Ga0059261_2695 at 2804.455 kb on - strand, within Ga0059261_2695 at 2804.455 kb on - strand, within Ga0059261_2695 at 2804.455 kb on - strand, within Ga0059261_2695 at 2804.455 kb on - strand, within Ga0059261_2695 at 2804.457 kb on + strand, within Ga0059261_2695 at 2804.457 kb on + strand, within Ga0059261_2695 at 2804.457 kb on + strand, within Ga0059261_2695 at 2804.457 kb on + strand, within Ga0059261_2695 at 2804.457 kb on + strand, within Ga0059261_2695 at 2804.457 kb on + strand, within Ga0059261_2695 at 2804.457 kb on + strand, within Ga0059261_2695 at 2804.458 kb on - strand, within Ga0059261_2695 at 2804.458 kb on - strand, within Ga0059261_2695 at 2804.458 kb on - strand, within Ga0059261_2695 at 2804.458 kb on - strand, within Ga0059261_2695
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 10 mM remove 2,803,352 - +0.5 2,803,415 + -0.7 2,803,415 + +0.2 2,803,415 + -0.4 2,803,416 - +0.2 2,803,416 - +0.5 2,803,416 - +1.0 2,803,416 - +0.0 2,803,416 - -0.4 2,803,416 - +0.7 2,803,597 + Ga0059261_2694 0.27 -0.1 2,803,597 + Ga0059261_2694 0.27 -0.1 2,803,598 - Ga0059261_2694 0.27 -0.4 2,803,841 + Ga0059261_2694 0.88 -0.3 2,803,841 + Ga0059261_2694 0.88 +0.1 2,803,842 - Ga0059261_2694 0.88 +0.7 2,803,842 - Ga0059261_2694 0.88 -0.1 2,803,885 + -0.2 2,803,885 + +0.3 2,803,885 + -0.7 2,803,885 + +0.2 2,803,885 + -0.1 2,803,885 + +0.7 2,803,885 + -0.9 2,803,885 + -1.0 2,803,885 + -0.1 2,803,885 + -0.9 2,803,886 - +0.3 2,803,886 - -0.1 2,803,886 - -1.0 2,803,886 - -0.7 2,803,944 + -0.7 2,803,944 + +0.1 2,803,945 - -0.3 2,803,945 - +0.3 2,804,065 - Ga0059261_2695 0.16 -0.4 2,804,106 + Ga0059261_2695 0.21 -0.5 2,804,106 + Ga0059261_2695 0.21 -1.3 2,804,239 - Ga0059261_2695 0.38 +0.3 2,804,258 + Ga0059261_2695 0.41 -0.2 2,804,259 + +1.3 2,804,259 + Ga0059261_2695 0.41 -1.3 2,804,259 + Ga0059261_2695 0.41 +1.2 2,804,259 + Ga0059261_2695 0.41 +0.7 2,804,259 + Ga0059261_2695 0.41 +0.5 2,804,259 + Ga0059261_2695 0.41 +0.7 2,804,259 + Ga0059261_2695 0.41 +0.1 2,804,259 + Ga0059261_2695 0.41 +1.0 2,804,259 + Ga0059261_2695 0.41 +0.7 2,804,259 + Ga0059261_2695 0.41 -0.2 2,804,259 + Ga0059261_2695 0.41 -0.2 2,804,260 - Ga0059261_2695 0.41 -1.4 2,804,260 - Ga0059261_2695 0.41 +0.0 2,804,260 - Ga0059261_2695 0.41 +0.1 2,804,260 - Ga0059261_2695 0.41 +0.7 2,804,260 - Ga0059261_2695 0.41 +0.9 2,804,260 - Ga0059261_2695 0.41 +0.4 2,804,260 - Ga0059261_2695 0.41 +0.7 2,804,278 + Ga0059261_2695 0.43 +1.7 2,804,279 - Ga0059261_2695 0.44 +1.3 2,804,279 - Ga0059261_2695 0.44 -0.3 2,804,398 + Ga0059261_2695 0.59 -0.2 2,804,398 + Ga0059261_2695 0.59 +0.0 2,804,398 + Ga0059261_2695 0.59 +1.0 2,804,398 + Ga0059261_2695 0.59 -0.1 2,804,399 - Ga0059261_2695 0.59 +0.6 2,804,454 + Ga0059261_2695 0.66 +0.7 2,804,454 + Ga0059261_2695 0.66 -0.0 2,804,454 + Ga0059261_2695 0.66 +0.2 2,804,455 - Ga0059261_2695 0.66 -0.1 2,804,455 - Ga0059261_2695 0.66 +0.2 2,804,455 - Ga0059261_2695 0.66 +0.3 2,804,455 - Ga0059261_2695 0.66 +0.0 2,804,455 - Ga0059261_2695 0.66 +0.2 2,804,455 - Ga0059261_2695 0.66 -1.7 2,804,455 - Ga0059261_2695 0.66 +1.2 2,804,455 - Ga0059261_2695 0.66 +0.1 2,804,455 - Ga0059261_2695 0.66 +0.6 2,804,455 - Ga0059261_2695 0.66 +0.1 2,804,455 - Ga0059261_2695 0.66 -0.3 2,804,457 + Ga0059261_2695 0.67 +0.4 2,804,457 + Ga0059261_2695 0.67 +0.1 2,804,457 + Ga0059261_2695 0.67 -0.1 2,804,457 + Ga0059261_2695 0.67 +0.1 2,804,457 + Ga0059261_2695 0.67 -0.3 2,804,457 + Ga0059261_2695 0.67 +0.7 2,804,457 + Ga0059261_2695 0.67 +0.9 2,804,458 - Ga0059261_2695 0.67 +0.6 2,804,458 - Ga0059261_2695 0.67 +0.6 2,804,458 - Ga0059261_2695 0.67 -0.4 2,804,458 - Ga0059261_2695 0.67 -1.0
Or see this region's nucleotide sequence