Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2396

Experiment: sodium fluoride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2394 and Ga0059261_2395 are separated by 4 nucleotidesGa0059261_2395 and Ga0059261_2396 are separated by 324 nucleotidesGa0059261_2396 and Ga0059261_2397 overlap by 8 nucleotides Ga0059261_2394: Ga0059261_2394 - diaminopimelate epimerase (EC 5.1.1.7), at 2,491,604 to 2,492,551 _2394 Ga0059261_2395: Ga0059261_2395 - hypothetical protein, at 2,492,556 to 2,492,960 _2395 Ga0059261_2396: Ga0059261_2396 - hypothetical protein, at 2,493,285 to 2,493,794 _2396 Ga0059261_2397: Ga0059261_2397 - Uncharacterized conserved protein, at 2,493,787 to 2,495,124 _2397 Position (kb) 2493 2494Strain fitness (log2 ratio) -1 0 1at 2492.557 kb on + strandat 2492.558 kb on - strandat 2492.756 kb on - strand, within Ga0059261_2395at 2492.779 kb on + strand, within Ga0059261_2395at 2492.779 kb on + strand, within Ga0059261_2395at 2492.779 kb on + strand, within Ga0059261_2395at 2492.779 kb on + strand, within Ga0059261_2395at 2492.780 kb on - strand, within Ga0059261_2395at 2492.780 kb on - strand, within Ga0059261_2395at 2492.780 kb on - strand, within Ga0059261_2395at 2492.780 kb on - strand, within Ga0059261_2395at 2492.780 kb on - strand, within Ga0059261_2395at 2492.806 kb on + strandat 2492.960 kb on + strandat 2492.961 kb on - strandat 2492.980 kb on + strandat 2492.981 kb on - strandat 2493.204 kb on - strandat 2493.274 kb on + strandat 2493.274 kb on + strandat 2493.275 kb on - strandat 2493.275 kb on - strandat 2493.275 kb on - strandat 2493.275 kb on - strandat 2493.510 kb on + strand, within Ga0059261_2396at 2493.510 kb on + strand, within Ga0059261_2396at 2493.510 kb on + strand, within Ga0059261_2396at 2493.511 kb on - strand, within Ga0059261_2396at 2493.645 kb on + strand, within Ga0059261_2396at 2493.645 kb on + strand, within Ga0059261_2396at 2493.645 kb on + strand, within Ga0059261_2396at 2493.645 kb on + strand, within Ga0059261_2396at 2493.646 kb on - strand, within Ga0059261_2396at 2493.646 kb on - strand, within Ga0059261_2396at 2493.646 kb on - strand, within Ga0059261_2396at 2493.646 kb on - strand, within Ga0059261_2396at 2493.646 kb on - strand, within Ga0059261_2396at 2494.213 kb on + strand, within Ga0059261_2397at 2494.213 kb on + strand, within Ga0059261_2397at 2494.213 kb on + strand, within Ga0059261_2397at 2494.213 kb on + strand, within Ga0059261_2397at 2494.213 kb on + strand, within Ga0059261_2397at 2494.213 kb on + strand, within Ga0059261_2397at 2494.213 kb on + strand, within Ga0059261_2397at 2494.213 kb on + strand, within Ga0059261_2397at 2494.214 kb on - strand, within Ga0059261_2397at 2494.214 kb on - strand, within Ga0059261_2397at 2494.214 kb on - strand, within Ga0059261_2397at 2494.214 kb on - strand, within Ga0059261_2397at 2494.214 kb on - strand, within Ga0059261_2397at 2494.214 kb on - strand, within Ga0059261_2397at 2494.214 kb on - strand, within Ga0059261_2397at 2494.214 kb on - strandat 2494.214 kb on - strand, within Ga0059261_2397at 2494.214 kb on - strand, within Ga0059261_2397at 2494.214 kb on - strand, within Ga0059261_2397at 2494.214 kb on - strand, within Ga0059261_2397at 2494.214 kb on - strand, within Ga0059261_2397at 2494.214 kb on - strand, within Ga0059261_2397at 2494.219 kb on + strand, within Ga0059261_2397at 2494.220 kb on - strand, within Ga0059261_2397at 2494.220 kb on - strand, within Ga0059261_2397at 2494.498 kb on + strand, within Ga0059261_2397at 2494.499 kb on - strand, within Ga0059261_2397at 2494.588 kb on - strand, within Ga0059261_2397

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 10 mM
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2,492,557 + -0.9
2,492,558 - -0.3
2,492,756 - Ga0059261_2395 0.49 -0.7
2,492,779 + Ga0059261_2395 0.55 -0.2
2,492,779 + Ga0059261_2395 0.55 -0.8
2,492,779 + Ga0059261_2395 0.55 +0.1
2,492,779 + Ga0059261_2395 0.55 -1.1
2,492,780 - Ga0059261_2395 0.55 -0.4
2,492,780 - Ga0059261_2395 0.55 +0.8
2,492,780 - Ga0059261_2395 0.55 +0.6
2,492,780 - Ga0059261_2395 0.55 -0.1
2,492,780 - Ga0059261_2395 0.55 -0.6
2,492,806 + +0.4
2,492,960 + -1.2
2,492,961 - -0.7
2,492,980 + -1.0
2,492,981 - +0.2
2,493,204 - -0.5
2,493,274 + -0.1
2,493,274 + +1.0
2,493,275 - -0.2
2,493,275 - +0.1
2,493,275 - +0.0
2,493,275 - +0.3
2,493,510 + Ga0059261_2396 0.44 -0.0
2,493,510 + Ga0059261_2396 0.44 +0.7
2,493,510 + Ga0059261_2396 0.44 +0.6
2,493,511 - Ga0059261_2396 0.44 +0.6
2,493,645 + Ga0059261_2396 0.71 -0.2
2,493,645 + Ga0059261_2396 0.71 +0.4
2,493,645 + Ga0059261_2396 0.71 +1.6
2,493,645 + Ga0059261_2396 0.71 -1.2
2,493,646 - Ga0059261_2396 0.71 +0.0
2,493,646 - Ga0059261_2396 0.71 +0.2
2,493,646 - Ga0059261_2396 0.71 -0.3
2,493,646 - Ga0059261_2396 0.71 +0.7
2,493,646 - Ga0059261_2396 0.71 +0.3
2,494,213 + Ga0059261_2397 0.32 -0.6
2,494,213 + Ga0059261_2397 0.32 +0.4
2,494,213 + Ga0059261_2397 0.32 -0.4
2,494,213 + Ga0059261_2397 0.32 +0.5
2,494,213 + Ga0059261_2397 0.32 -0.3
2,494,213 + Ga0059261_2397 0.32 -0.2
2,494,213 + Ga0059261_2397 0.32 -0.3
2,494,213 + Ga0059261_2397 0.32 +0.1
2,494,214 - Ga0059261_2397 0.32 -0.1
2,494,214 - Ga0059261_2397 0.32 -0.4
2,494,214 - Ga0059261_2397 0.32 +1.0
2,494,214 - Ga0059261_2397 0.32 -0.1
2,494,214 - Ga0059261_2397 0.32 +0.3
2,494,214 - Ga0059261_2397 0.32 -0.7
2,494,214 - Ga0059261_2397 0.32 -0.3
2,494,214 - -0.0
2,494,214 - Ga0059261_2397 0.32 -0.3
2,494,214 - Ga0059261_2397 0.32 -0.1
2,494,214 - Ga0059261_2397 0.32 -0.6
2,494,214 - Ga0059261_2397 0.32 -0.0
2,494,214 - Ga0059261_2397 0.32 -0.5
2,494,214 - Ga0059261_2397 0.32 +0.6
2,494,219 + Ga0059261_2397 0.32 -0.8
2,494,220 - Ga0059261_2397 0.32 -0.7
2,494,220 - Ga0059261_2397 0.32 +1.0
2,494,498 + Ga0059261_2397 0.53 -0.8
2,494,499 - Ga0059261_2397 0.53 +1.0
2,494,588 - Ga0059261_2397 0.60 +0.2

Or see this region's nucleotide sequence