Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2314

Experiment: sodium fluoride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2313 and Ga0059261_2314 are separated by 33 nucleotidesGa0059261_2314 and Ga0059261_2315 are separated by 28 nucleotidesGa0059261_2315 and Ga0059261_2316 overlap by 1 nucleotides Ga0059261_2313: Ga0059261_2313 - condensin subunit Smc, at 2,423,747 to 2,427,154 _2313 Ga0059261_2314: Ga0059261_2314 - Protein-disulfide isomerase, at 2,427,188 to 2,427,922 _2314 Ga0059261_2315: Ga0059261_2315 - Protein-disulfide isomerase, at 2,427,951 to 2,428,661 _2315 Ga0059261_2316: Ga0059261_2316 - Uncharacterized protein conserved in bacteria, at 2,428,661 to 2,429,173 _2316 Position (kb) 2427 2428Strain fitness (log2 ratio) -1 0 1 2at 2426.835 kb on + strandat 2426.835 kb on + strandat 2426.836 kb on - strandat 2426.861 kb on - strandat 2427.157 kb on + strandat 2427.157 kb on + strandat 2427.157 kb on + strandat 2427.157 kb on + strandat 2427.157 kb on + strandat 2427.158 kb on - strandat 2427.158 kb on - strandat 2427.158 kb on - strandat 2427.158 kb on - strandat 2427.158 kb on - strandat 2427.286 kb on + strand, within Ga0059261_2314at 2427.287 kb on - strandat 2427.287 kb on - strand, within Ga0059261_2314at 2427.289 kb on + strand, within Ga0059261_2314at 2427.289 kb on + strand, within Ga0059261_2314at 2427.289 kb on + strand, within Ga0059261_2314at 2427.290 kb on - strand, within Ga0059261_2314at 2427.290 kb on - strand, within Ga0059261_2314at 2427.290 kb on - strand, within Ga0059261_2314at 2427.290 kb on - strand, within Ga0059261_2314at 2427.291 kb on + strand, within Ga0059261_2314at 2427.291 kb on + strand, within Ga0059261_2314at 2427.292 kb on - strand, within Ga0059261_2314at 2427.292 kb on - strand, within Ga0059261_2314at 2427.292 kb on - strand, within Ga0059261_2314at 2427.292 kb on - strandat 2427.406 kb on - strand, within Ga0059261_2314at 2427.406 kb on - strand, within Ga0059261_2314at 2427.412 kb on - strand, within Ga0059261_2314at 2427.412 kb on - strand, within Ga0059261_2314at 2427.523 kb on - strand, within Ga0059261_2314at 2427.917 kb on - strandat 2427.917 kb on - strandat 2428.265 kb on + strand, within Ga0059261_2315at 2428.265 kb on + strand, within Ga0059261_2315at 2428.265 kb on + strand, within Ga0059261_2315at 2428.265 kb on + strand, within Ga0059261_2315at 2428.265 kb on + strand, within Ga0059261_2315at 2428.265 kb on + strandat 2428.266 kb on - strand, within Ga0059261_2315at 2428.266 kb on - strand, within Ga0059261_2315at 2428.266 kb on - strand, within Ga0059261_2315at 2428.266 kb on - strand, within Ga0059261_2315at 2428.266 kb on - strand, within Ga0059261_2315at 2428.266 kb on - strand, within Ga0059261_2315at 2428.414 kb on + strand, within Ga0059261_2315at 2428.414 kb on + strand, within Ga0059261_2315at 2428.463 kb on + strand, within Ga0059261_2315at 2428.463 kb on + strand, within Ga0059261_2315at 2428.463 kb on + strand, within Ga0059261_2315at 2428.463 kb on + strand, within Ga0059261_2315at 2428.463 kb on + strand, within Ga0059261_2315at 2428.463 kb on + strand, within Ga0059261_2315at 2428.463 kb on + strand, within Ga0059261_2315at 2428.463 kb on + strand, within Ga0059261_2315at 2428.463 kb on + strand, within Ga0059261_2315at 2428.463 kb on + strand, within Ga0059261_2315at 2428.463 kb on + strand, within Ga0059261_2315at 2428.463 kb on + strand, within Ga0059261_2315at 2428.464 kb on - strand, within Ga0059261_2315at 2428.464 kb on - strand, within Ga0059261_2315at 2428.464 kb on - strand, within Ga0059261_2315at 2428.464 kb on - strand, within Ga0059261_2315at 2428.464 kb on - strand, within Ga0059261_2315at 2428.464 kb on - strand, within Ga0059261_2315at 2428.464 kb on - strand, within Ga0059261_2315at 2428.464 kb on - strand, within Ga0059261_2315at 2428.464 kb on - strand, within Ga0059261_2315at 2428.464 kb on - strand, within Ga0059261_2315at 2428.465 kb on + strand, within Ga0059261_2315at 2428.465 kb on + strand, within Ga0059261_2315at 2428.465 kb on + strand, within Ga0059261_2315at 2428.465 kb on + strand, within Ga0059261_2315at 2428.465 kb on + strand, within Ga0059261_2315at 2428.466 kb on - strand, within Ga0059261_2315at 2428.466 kb on - strand, within Ga0059261_2315at 2428.466 kb on - strand, within Ga0059261_2315at 2428.466 kb on - strand, within Ga0059261_2315at 2428.466 kb on - strand, within Ga0059261_2315at 2428.466 kb on - strand, within Ga0059261_2315at 2428.466 kb on - strand, within Ga0059261_2315at 2428.466 kb on - strand, within Ga0059261_2315at 2428.474 kb on + strand, within Ga0059261_2315at 2428.474 kb on + strand, within Ga0059261_2315at 2428.475 kb on - strand, within Ga0059261_2315at 2428.475 kb on - strand, within Ga0059261_2315at 2428.475 kb on - strandat 2428.475 kb on - strand, within Ga0059261_2315at 2428.475 kb on - strand, within Ga0059261_2315at 2428.648 kb on + strandat 2428.648 kb on + strandat 2428.648 kb on + strandat 2428.648 kb on + strandat 2428.648 kb on + strandat 2428.649 kb on - strandat 2428.649 kb on - strandat 2428.649 kb on - strandat 2428.649 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 10 mM
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2,426,835 + +0.5
2,426,835 + +0.4
2,426,836 - -0.3
2,426,861 - -1.4
2,427,157 + -0.2
2,427,157 + -0.6
2,427,157 + -0.4
2,427,157 + +0.2
2,427,157 + +0.4
2,427,158 - -1.3
2,427,158 - +0.2
2,427,158 - +1.2
2,427,158 - +0.4
2,427,158 - -0.6
2,427,286 + Ga0059261_2314 0.13 +1.6
2,427,287 - -0.4
2,427,287 - Ga0059261_2314 0.13 +0.6
2,427,289 + Ga0059261_2314 0.14 -0.1
2,427,289 + Ga0059261_2314 0.14 +1.4
2,427,289 + Ga0059261_2314 0.14 +1.8
2,427,290 - Ga0059261_2314 0.14 +1.0
2,427,290 - Ga0059261_2314 0.14 +0.2
2,427,290 - Ga0059261_2314 0.14 +0.7
2,427,290 - Ga0059261_2314 0.14 +1.3
2,427,291 + Ga0059261_2314 0.14 -0.6
2,427,291 + Ga0059261_2314 0.14 +0.2
2,427,292 - Ga0059261_2314 0.14 +1.6
2,427,292 - Ga0059261_2314 0.14 -1.7
2,427,292 - Ga0059261_2314 0.14 -0.7
2,427,292 - -0.0
2,427,406 - Ga0059261_2314 0.30 +1.3
2,427,406 - Ga0059261_2314 0.30 -0.2
2,427,412 - Ga0059261_2314 0.30 +0.5
2,427,412 - Ga0059261_2314 0.30 -0.2
2,427,523 - Ga0059261_2314 0.46 +1.3
2,427,917 - +0.3
2,427,917 - +0.9
2,428,265 + Ga0059261_2315 0.44 +0.0
2,428,265 + Ga0059261_2315 0.44 -0.6
2,428,265 + Ga0059261_2315 0.44 +0.2
2,428,265 + Ga0059261_2315 0.44 +1.4
2,428,265 + Ga0059261_2315 0.44 +0.1
2,428,265 + -0.4
2,428,266 - Ga0059261_2315 0.44 +1.0
2,428,266 - Ga0059261_2315 0.44 -0.3
2,428,266 - Ga0059261_2315 0.44 +0.7
2,428,266 - Ga0059261_2315 0.44 -0.3
2,428,266 - Ga0059261_2315 0.44 -0.4
2,428,266 - Ga0059261_2315 0.44 +0.1
2,428,414 + Ga0059261_2315 0.65 -1.3
2,428,414 + Ga0059261_2315 0.65 -0.5
2,428,463 + Ga0059261_2315 0.72 -0.1
2,428,463 + Ga0059261_2315 0.72 +0.7
2,428,463 + Ga0059261_2315 0.72 -0.7
2,428,463 + Ga0059261_2315 0.72 +1.8
2,428,463 + Ga0059261_2315 0.72 +0.2
2,428,463 + Ga0059261_2315 0.72 -0.9
2,428,463 + Ga0059261_2315 0.72 -0.8
2,428,463 + Ga0059261_2315 0.72 -0.1
2,428,463 + Ga0059261_2315 0.72 +0.8
2,428,463 + Ga0059261_2315 0.72 +1.6
2,428,463 + Ga0059261_2315 0.72 -0.7
2,428,463 + Ga0059261_2315 0.72 -0.3
2,428,464 - Ga0059261_2315 0.72 +0.1
2,428,464 - Ga0059261_2315 0.72 +0.3
2,428,464 - Ga0059261_2315 0.72 -0.1
2,428,464 - Ga0059261_2315 0.72 -0.0
2,428,464 - Ga0059261_2315 0.72 +0.5
2,428,464 - Ga0059261_2315 0.72 +0.1
2,428,464 - Ga0059261_2315 0.72 -0.6
2,428,464 - Ga0059261_2315 0.72 -0.6
2,428,464 - Ga0059261_2315 0.72 -0.1
2,428,464 - Ga0059261_2315 0.72 -0.4
2,428,465 + Ga0059261_2315 0.72 -0.9
2,428,465 + Ga0059261_2315 0.72 +0.9
2,428,465 + Ga0059261_2315 0.72 +0.4
2,428,465 + Ga0059261_2315 0.72 +0.0
2,428,465 + Ga0059261_2315 0.72 +0.4
2,428,466 - Ga0059261_2315 0.72 -0.4
2,428,466 - Ga0059261_2315 0.72 +0.4
2,428,466 - Ga0059261_2315 0.72 +0.3
2,428,466 - Ga0059261_2315 0.72 -0.2
2,428,466 - Ga0059261_2315 0.72 +0.2
2,428,466 - Ga0059261_2315 0.72 +0.1
2,428,466 - Ga0059261_2315 0.72 +0.3
2,428,466 - Ga0059261_2315 0.72 -0.5
2,428,474 + Ga0059261_2315 0.74 +0.1
2,428,474 + Ga0059261_2315 0.74 -0.4
2,428,475 - Ga0059261_2315 0.74 -0.2
2,428,475 - Ga0059261_2315 0.74 +0.5
2,428,475 - +1.0
2,428,475 - Ga0059261_2315 0.74 +0.2
2,428,475 - Ga0059261_2315 0.74 -0.6
2,428,648 + +0.8
2,428,648 + -1.0
2,428,648 + -1.0
2,428,648 + -0.6
2,428,648 + +0.8
2,428,649 - +0.4
2,428,649 - -0.1
2,428,649 - -0.6
2,428,649 - +0.3

Or see this region's nucleotide sequence