Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2222

Experiment: sodium fluoride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2221 and Ga0059261_2222 are separated by 138 nucleotidesGa0059261_2222 and Ga0059261_2223 are separated by 259 nucleotides Ga0059261_2221: Ga0059261_2221 - Outer membrane lipoprotein-sorting protein, at 2,324,454 to 2,325,086 _2221 Ga0059261_2222: Ga0059261_2222 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 2,325,225 to 2,325,683 _2222 Ga0059261_2223: Ga0059261_2223 - Mg2+ transporter (mgtE), at 2,325,943 to 2,327,340 _2223 Position (kb) 2325 2326Strain fitness (log2 ratio) -1 0 1at 2324.275 kb on + strandat 2324.276 kb on - strandat 2324.276 kb on - strandat 2324.276 kb on - strandat 2324.276 kb on - strandat 2324.351 kb on + strandat 2324.351 kb on + strandat 2324.351 kb on + strandat 2324.351 kb on + strandat 2324.352 kb on - strandat 2324.352 kb on - strandat 2324.352 kb on - strandat 2324.352 kb on - strandat 2324.352 kb on - strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.398 kb on + strandat 2324.398 kb on - strandat 2324.398 kb on - strandat 2324.398 kb on - strandat 2324.398 kb on - strandat 2324.398 kb on - strandat 2324.398 kb on - strandat 2324.398 kb on - strandat 2324.412 kb on + strandat 2324.413 kb on - strandat 2325.087 kb on - strandat 2325.127 kb on + strandat 2325.128 kb on - strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.334 kb on + strand, within Ga0059261_2222at 2325.334 kb on + strand, within Ga0059261_2222at 2325.334 kb on + strand, within Ga0059261_2222at 2325.334 kb on + strand, within Ga0059261_2222at 2325.334 kb on + strand, within Ga0059261_2222at 2325.334 kb on + strand, within Ga0059261_2222at 2325.334 kb on + strand, within Ga0059261_2222at 2325.335 kb on - strand, within Ga0059261_2222at 2325.335 kb on - strand, within Ga0059261_2222at 2325.335 kb on - strand, within Ga0059261_2222at 2325.335 kb on - strand, within Ga0059261_2222at 2325.559 kb on + strand, within Ga0059261_2222at 2325.559 kb on + strand, within Ga0059261_2222at 2325.559 kb on + strand, within Ga0059261_2222at 2325.559 kb on + strandat 2325.559 kb on + strand, within Ga0059261_2222at 2325.559 kb on + strand, within Ga0059261_2222at 2325.560 kb on - strand, within Ga0059261_2222at 2325.560 kb on - strand, within Ga0059261_2222at 2325.560 kb on - strand, within Ga0059261_2222at 2325.560 kb on - strand, within Ga0059261_2222at 2325.560 kb on - strand, within Ga0059261_2222at 2325.560 kb on - strand, within Ga0059261_2222at 2325.560 kb on - strand, within Ga0059261_2222at 2325.560 kb on - strand, within Ga0059261_2222at 2325.704 kb on + strandat 2325.724 kb on + strandat 2325.724 kb on + strandat 2325.724 kb on + strandat 2325.724 kb on + strandat 2325.724 kb on + strandat 2325.724 kb on + strandat 2325.724 kb on + strandat 2325.724 kb on + strandat 2325.725 kb on - strandat 2325.725 kb on - strandat 2325.725 kb on - strandat 2325.725 kb on - strandat 2325.725 kb on - strandat 2325.725 kb on - strandat 2325.725 kb on - strandat 2325.725 kb on - strandat 2325.725 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 10 mM
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2,324,275 + -0.4
2,324,276 - +0.1
2,324,276 - +0.6
2,324,276 - -0.0
2,324,276 - +0.6
2,324,351 + -0.2
2,324,351 + -0.2
2,324,351 + +0.8
2,324,351 + +0.3
2,324,352 - +0.1
2,324,352 - +0.3
2,324,352 - -0.8
2,324,352 - -0.4
2,324,352 - -0.3
2,324,397 + +0.4
2,324,397 + -0.0
2,324,397 + +1.2
2,324,397 + -0.0
2,324,397 + -1.3
2,324,397 + -0.6
2,324,397 + +0.9
2,324,397 + +1.6
2,324,397 + +0.6
2,324,397 + -0.2
2,324,398 + -0.0
2,324,398 - +0.4
2,324,398 - -1.0
2,324,398 - -0.9
2,324,398 - +0.7
2,324,398 - +0.1
2,324,398 - -0.6
2,324,398 - -1.0
2,324,412 + +0.8
2,324,413 - +0.6
2,325,087 - +0.8
2,325,127 + -1.1
2,325,128 - -0.1
2,325,170 + -0.1
2,325,170 + -0.1
2,325,170 + +0.1
2,325,170 + -0.9
2,325,170 + +0.7
2,325,170 + +0.9
2,325,170 + +0.1
2,325,170 + -0.6
2,325,170 + -0.6
2,325,171 - -0.2
2,325,171 - +0.0
2,325,171 - +0.1
2,325,171 - -0.5
2,325,171 - +0.1
2,325,171 - +0.4
2,325,171 - +0.2
2,325,171 - +0.4
2,325,171 - -0.2
2,325,171 - -0.7
2,325,171 - +0.4
2,325,171 - -0.6
2,325,175 + -0.3
2,325,175 + +0.1
2,325,175 + +1.6
2,325,175 + +0.2
2,325,175 + +1.3
2,325,175 + -0.4
2,325,175 + +1.3
2,325,175 + -0.1
2,325,175 + -0.0
2,325,175 + -0.2
2,325,175 + +0.5
2,325,175 + -0.6
2,325,175 + +0.1
2,325,175 + -0.3
2,325,175 + +1.0
2,325,175 + +0.3
2,325,175 + +0.8
2,325,175 + +0.4
2,325,175 + -0.1
2,325,175 + +0.1
2,325,175 + -0.0
2,325,175 + +0.1
2,325,175 + +1.0
2,325,176 - -0.1
2,325,176 - +0.9
2,325,176 - +0.4
2,325,176 - +0.9
2,325,176 - -0.1
2,325,176 - +0.7
2,325,176 - -0.2
2,325,176 - -0.3
2,325,176 - +0.4
2,325,176 - -0.3
2,325,176 - -0.8
2,325,176 - -0.1
2,325,176 - -0.3
2,325,176 - -0.3
2,325,176 - +0.1
2,325,176 - +0.2
2,325,176 - -0.6
2,325,176 - +0.2
2,325,176 - -0.4
2,325,176 - -0.6
2,325,334 + Ga0059261_2222 0.24 +0.0
2,325,334 + Ga0059261_2222 0.24 -0.2
2,325,334 + Ga0059261_2222 0.24 +1.2
2,325,334 + Ga0059261_2222 0.24 +1.1
2,325,334 + Ga0059261_2222 0.24 +1.1
2,325,334 + Ga0059261_2222 0.24 +1.0
2,325,334 + Ga0059261_2222 0.24 -0.0
2,325,335 - Ga0059261_2222 0.24 -0.0
2,325,335 - Ga0059261_2222 0.24 +0.5
2,325,335 - Ga0059261_2222 0.24 +0.8
2,325,335 - Ga0059261_2222 0.24 +0.2
2,325,559 + Ga0059261_2222 0.73 +0.3
2,325,559 + Ga0059261_2222 0.73 +0.0
2,325,559 + Ga0059261_2222 0.73 +0.7
2,325,559 + -0.6
2,325,559 + Ga0059261_2222 0.73 +0.2
2,325,559 + Ga0059261_2222 0.73 +0.9
2,325,560 - Ga0059261_2222 0.73 +0.3
2,325,560 - Ga0059261_2222 0.73 -0.0
2,325,560 - Ga0059261_2222 0.73 +1.6
2,325,560 - Ga0059261_2222 0.73 -0.0
2,325,560 - Ga0059261_2222 0.73 -0.2
2,325,560 - Ga0059261_2222 0.73 +0.3
2,325,560 - Ga0059261_2222 0.73 +0.3
2,325,560 - Ga0059261_2222 0.73 -0.8
2,325,704 + -0.8
2,325,724 + +0.5
2,325,724 + -1.0
2,325,724 + -0.1
2,325,724 + +0.4
2,325,724 + -0.2
2,325,724 + +0.4
2,325,724 + +0.6
2,325,724 + +0.9
2,325,725 - +0.6
2,325,725 - -0.1
2,325,725 - +1.1
2,325,725 - +0.8
2,325,725 - +1.0
2,325,725 - -0.2
2,325,725 - -0.3
2,325,725 - -0.8
2,325,725 - +0.5

Or see this region's nucleotide sequence