Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1092

Experiment: sodium fluoride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1090 and Ga0059261_1091 are separated by 18 nucleotidesGa0059261_1091 and Ga0059261_1092 overlap by 1 nucleotidesGa0059261_1092 and Ga0059261_1093 are separated by 11 nucleotides Ga0059261_1090: Ga0059261_1090 - flagellar biosynthesis protein FlhA, at 1,119,655 to 1,121,748 _1090 Ga0059261_1091: Ga0059261_1091 - Bacterial regulatory protein, Fis family, at 1,121,767 to 1,122,210 _1091 Ga0059261_1092: Ga0059261_1092 - flagellar motor switch protein FliN, at 1,122,210 to 1,122,572 _1092 Ga0059261_1093: Ga0059261_1093 - flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF), at 1,122,584 to 1,124,200 _1093 Position (kb) 1122 1123Strain fitness (log2 ratio) -2 -1 0 1at 1121.329 kb on - strand, within Ga0059261_1090at 1121.329 kb on - strand, within Ga0059261_1090at 1121.768 kb on + strandat 1121.768 kb on + strandat 1122.212 kb on - strandat 1122.380 kb on + strand, within Ga0059261_1092at 1122.467 kb on + strand, within Ga0059261_1092at 1122.560 kb on + strandat 1122.560 kb on + strandat 1122.560 kb on + strandat 1122.561 kb on - strandat 1122.918 kb on + strand, within Ga0059261_1093at 1122.919 kb on - strand, within Ga0059261_1093at 1123.009 kb on + strand, within Ga0059261_1093at 1123.009 kb on + strand, within Ga0059261_1093at 1123.009 kb on + strand, within Ga0059261_1093at 1123.009 kb on + strand, within Ga0059261_1093at 1123.010 kb on - strand, within Ga0059261_1093at 1123.010 kb on - strand, within Ga0059261_1093at 1123.010 kb on - strand, within Ga0059261_1093at 1123.010 kb on - strand, within Ga0059261_1093at 1123.010 kb on - strand, within Ga0059261_1093at 1123.010 kb on - strand, within Ga0059261_1093at 1123.197 kb on + strand, within Ga0059261_1093at 1123.197 kb on + strand, within Ga0059261_1093at 1123.197 kb on + strand, within Ga0059261_1093at 1123.197 kb on + strand, within Ga0059261_1093at 1123.198 kb on - strand, within Ga0059261_1093at 1123.198 kb on - strand, within Ga0059261_1093at 1123.198 kb on - strand, within Ga0059261_1093at 1123.198 kb on - strand, within Ga0059261_1093

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 10 mM
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1,121,329 - Ga0059261_1090 0.80 -0.1
1,121,329 - Ga0059261_1090 0.80 +0.4
1,121,768 + -0.6
1,121,768 + +0.1
1,122,212 - -0.9
1,122,380 + Ga0059261_1092 0.47 +0.0
1,122,467 + Ga0059261_1092 0.71 +1.1
1,122,560 + +0.3
1,122,560 + -0.6
1,122,560 + +0.2
1,122,561 - -0.2
1,122,918 + Ga0059261_1093 0.21 -0.2
1,122,919 - Ga0059261_1093 0.21 +0.1
1,123,009 + Ga0059261_1093 0.26 -0.9
1,123,009 + Ga0059261_1093 0.26 -2.3
1,123,009 + Ga0059261_1093 0.26 +0.2
1,123,009 + Ga0059261_1093 0.26 -1.4
1,123,010 - Ga0059261_1093 0.26 -0.4
1,123,010 - Ga0059261_1093 0.26 +0.8
1,123,010 - Ga0059261_1093 0.26 +0.4
1,123,010 - Ga0059261_1093 0.26 +0.2
1,123,010 - Ga0059261_1093 0.26 +0.1
1,123,010 - Ga0059261_1093 0.26 +0.2
1,123,197 + Ga0059261_1093 0.38 -0.1
1,123,197 + Ga0059261_1093 0.38 -0.7
1,123,197 + Ga0059261_1093 0.38 +0.1
1,123,197 + Ga0059261_1093 0.38 +0.2
1,123,198 - Ga0059261_1093 0.38 -0.0
1,123,198 - Ga0059261_1093 0.38 -0.6
1,123,198 - Ga0059261_1093 0.38 +0.2
1,123,198 - Ga0059261_1093 0.38 +0.5

Or see this region's nucleotide sequence