Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0957

Experiment: sodium fluoride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0954 and Ga0059261_0955 are separated by 102 nucleotidesGa0059261_0955 and Ga0059261_0956 are separated by 8 nucleotidesGa0059261_0956 and Ga0059261_0957 are separated by 83 nucleotidesGa0059261_0957 and Ga0059261_0958 are separated by 157 nucleotides Ga0059261_0954: Ga0059261_0954 - tyrosyl-tRNA synthetase (EC 6.1.1.1), at 984,783 to 986,009 _0954 Ga0059261_0955: Ga0059261_0955 - PilZ domain, at 986,112 to 986,447 _0955 Ga0059261_0956: Ga0059261_0956 - Uncharacterized protein conserved in bacteria, at 986,456 to 986,869 _0956 Ga0059261_0957: Ga0059261_0957 - Protein of unknown function (DUF2798), at 986,953 to 987,210 _0957 Ga0059261_0958: Ga0059261_0958 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 987,368 to 989,425 _0958 Position (kb) 986 987 988Strain fitness (log2 ratio) -2 -1 0 1at 986.054 kb on - strandat 986.054 kb on - strandat 986.054 kb on - strandat 986.066 kb on + strandat 986.066 kb on + strandat 986.118 kb on + strandat 986.118 kb on + strandat 986.118 kb on + strandat 986.118 kb on + strandat 986.118 kb on + strandat 986.119 kb on - strandat 986.119 kb on - strandat 986.193 kb on + strand, within Ga0059261_0955at 986.194 kb on - strand, within Ga0059261_0955at 986.412 kb on + strand, within Ga0059261_0955at 986.412 kb on + strand, within Ga0059261_0955at 986.412 kb on + strand, within Ga0059261_0955at 986.412 kb on + strand, within Ga0059261_0955at 986.412 kb on + strand, within Ga0059261_0955at 986.412 kb on + strand, within Ga0059261_0955at 986.413 kb on - strand, within Ga0059261_0955at 986.413 kb on - strand, within Ga0059261_0955at 986.413 kb on - strand, within Ga0059261_0955at 986.413 kb on - strand, within Ga0059261_0955at 986.413 kb on - strand, within Ga0059261_0955at 986.415 kb on + strandat 986.415 kb on + strandat 986.415 kb on + strandat 986.416 kb on - strandat 986.416 kb on - strandat 986.416 kb on - strandat 986.450 kb on + strandat 986.450 kb on + strandat 986.450 kb on + strandat 986.450 kb on + strandat 986.451 kb on - strandat 986.451 kb on - strandat 986.451 kb on - strandat 986.451 kb on - strandat 986.457 kb on + strandat 986.457 kb on + strandat 986.457 kb on + strandat 986.457 kb on + strandat 986.458 kb on - strandat 986.458 kb on - strandat 986.637 kb on + strand, within Ga0059261_0956at 986.638 kb on - strand, within Ga0059261_0956at 986.667 kb on + strand, within Ga0059261_0956at 986.667 kb on + strand, within Ga0059261_0956at 986.667 kb on + strand, within Ga0059261_0956at 986.667 kb on + strand, within Ga0059261_0956at 986.667 kb on + strand, within Ga0059261_0956at 986.667 kb on + strand, within Ga0059261_0956at 986.667 kb on + strand, within Ga0059261_0956at 986.667 kb on + strand, within Ga0059261_0956at 986.667 kb on + strand, within Ga0059261_0956at 986.667 kb on + strand, within Ga0059261_0956at 986.667 kb on + strand, within Ga0059261_0956at 986.667 kb on + strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strandat 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.668 kb on - strand, within Ga0059261_0956at 986.907 kb on + strandat 986.908 kb on - strandat 986.908 kb on - strandat 986.908 kb on - strandat 986.908 kb on - strandat 986.908 kb on - strandat 986.908 kb on - strandat 986.908 kb on - strandat 986.996 kb on - strand, within Ga0059261_0957at 987.158 kb on - strand, within Ga0059261_0957at 987.158 kb on - strand, within Ga0059261_0957at 987.213 kb on + strandat 987.213 kb on + strandat 987.213 kb on + strandat 987.213 kb on + strandat 987.213 kb on + strandat 987.214 kb on - strandat 987.214 kb on - strandat 987.214 kb on - strandat 987.214 kb on - strandat 987.415 kb on - strandat 987.415 kb on - strandat 987.415 kb on - strandat 987.640 kb on + strand, within Ga0059261_0958at 987.641 kb on - strand, within Ga0059261_0958at 987.641 kb on - strand, within Ga0059261_0958at 987.698 kb on + strand, within Ga0059261_0958at 987.699 kb on - strand, within Ga0059261_0958at 988.014 kb on + strand, within Ga0059261_0958at 988.014 kb on + strand, within Ga0059261_0958at 988.014 kb on + strand, within Ga0059261_0958at 988.015 kb on - strand, within Ga0059261_0958at 988.015 kb on - strand, within Ga0059261_0958at 988.015 kb on - strand, within Ga0059261_0958at 988.015 kb on - strand, within Ga0059261_0958

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 10 mM
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986,054 - +0.5
986,054 - +0.8
986,054 - +0.4
986,066 + +0.0
986,066 + -0.1
986,118 + +0.0
986,118 + -0.8
986,118 + -0.7
986,118 + +0.2
986,118 + +0.7
986,119 - -0.6
986,119 - -0.4
986,193 + Ga0059261_0955 0.24 -0.0
986,194 - Ga0059261_0955 0.24 -0.4
986,412 + Ga0059261_0955 0.89 +0.3
986,412 + Ga0059261_0955 0.89 -0.1
986,412 + Ga0059261_0955 0.89 +0.0
986,412 + Ga0059261_0955 0.89 -0.9
986,412 + Ga0059261_0955 0.89 +0.1
986,412 + Ga0059261_0955 0.89 +0.1
986,413 - Ga0059261_0955 0.90 +0.1
986,413 - Ga0059261_0955 0.90 -0.6
986,413 - Ga0059261_0955 0.90 -0.8
986,413 - Ga0059261_0955 0.90 -0.5
986,413 - Ga0059261_0955 0.90 +0.5
986,415 + +0.2
986,415 + -0.5
986,415 + -0.4
986,416 - +0.6
986,416 - +0.2
986,416 - -0.9
986,450 + -0.3
986,450 + -0.1
986,450 + +0.1
986,450 + +0.9
986,451 - -0.2
986,451 - -0.0
986,451 - -0.2
986,451 - +1.4
986,457 + -0.6
986,457 + -0.7
986,457 + -0.5
986,457 + -0.5
986,458 - -1.5
986,458 - -0.1
986,637 + Ga0059261_0956 0.44 -0.5
986,638 - Ga0059261_0956 0.44 +0.2
986,667 + Ga0059261_0956 0.51 +1.1
986,667 + Ga0059261_0956 0.51 -0.6
986,667 + Ga0059261_0956 0.51 +0.6
986,667 + Ga0059261_0956 0.51 +0.3
986,667 + Ga0059261_0956 0.51 -0.3
986,667 + Ga0059261_0956 0.51 -1.1
986,667 + Ga0059261_0956 0.51 -0.1
986,667 + Ga0059261_0956 0.51 -0.6
986,667 + Ga0059261_0956 0.51 +0.5
986,667 + Ga0059261_0956 0.51 +0.4
986,667 + Ga0059261_0956 0.51 -1.6
986,667 + Ga0059261_0956 0.51 -0.0
986,668 - Ga0059261_0956 0.51 +0.2
986,668 - Ga0059261_0956 0.51 -2.5
986,668 - +1.0
986,668 - Ga0059261_0956 0.51 +0.3
986,668 - Ga0059261_0956 0.51 -0.1
986,668 - Ga0059261_0956 0.51 +0.4
986,668 - Ga0059261_0956 0.51 +0.4
986,668 - Ga0059261_0956 0.51 -0.1
986,668 - Ga0059261_0956 0.51 +0.9
986,668 - Ga0059261_0956 0.51 -0.3
986,668 - Ga0059261_0956 0.51 +0.1
986,668 - Ga0059261_0956 0.51 +0.1
986,668 - Ga0059261_0956 0.51 +0.1
986,668 - Ga0059261_0956 0.51 -0.3
986,668 - Ga0059261_0956 0.51 -0.2
986,907 + -0.3
986,908 - -0.3
986,908 - +0.9
986,908 - +0.8
986,908 - -0.4
986,908 - +0.2
986,908 - +0.4
986,908 - +0.4
986,996 - Ga0059261_0957 0.17 +0.5
987,158 - Ga0059261_0957 0.79 +0.5
987,158 - Ga0059261_0957 0.79 +0.2
987,213 + +0.3
987,213 + -0.3
987,213 + -0.2
987,213 + -1.0
987,213 + -1.0
987,214 - -0.8
987,214 - +0.0
987,214 - -0.1
987,214 - +0.1
987,415 - -0.8
987,415 - -0.3
987,415 - -0.3
987,640 + Ga0059261_0958 0.13 -0.1
987,641 - Ga0059261_0958 0.13 -0.6
987,641 - Ga0059261_0958 0.13 -0.6
987,698 + Ga0059261_0958 0.16 +0.6
987,699 - Ga0059261_0958 0.16 +0.7
988,014 + Ga0059261_0958 0.31 +0.3
988,014 + Ga0059261_0958 0.31 -0.7
988,014 + Ga0059261_0958 0.31 -0.2
988,015 - Ga0059261_0958 0.31 -0.8
988,015 - Ga0059261_0958 0.31 +0.1
988,015 - Ga0059261_0958 0.31 -0.9
988,015 - Ga0059261_0958 0.31 -0.4

Or see this region's nucleotide sequence