Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0918

Experiment: sodium fluoride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0916 and Ga0059261_0917 are separated by 10 nucleotidesGa0059261_0917 and Ga0059261_0918 are separated by 22 nucleotidesGa0059261_0918 and Ga0059261_0919 overlap by 4 nucleotidesGa0059261_0919 and Ga0059261_0920 overlap by 1 nucleotides Ga0059261_0916: Ga0059261_0916 - HPr Serine kinase C-terminal domain, at 950,420 to 950,860 _0916 Ga0059261_0917: Ga0059261_0917 - Predicted P-loop-containing kinase, at 950,871 to 951,791 _0917 Ga0059261_0918: Ga0059261_0918 - Phosphotransferase system, mannose/fructose-specific component IIA, at 951,814 to 952,221 _0918 Ga0059261_0919: Ga0059261_0919 - Phosphotransferase System HPr (HPr) Family, at 952,218 to 952,490 _0919 Ga0059261_0920: Ga0059261_0920 - rRNA methylases, at 952,490 to 953,293 _0920 Position (kb) 951 952 953Strain fitness (log2 ratio) -2 -1 0 1 2at 951.066 kb on - strand, within Ga0059261_0917at 951.141 kb on + strand, within Ga0059261_0917at 951.159 kb on + strand, within Ga0059261_0917at 951.159 kb on + strand, within Ga0059261_0917at 951.160 kb on - strand, within Ga0059261_0917at 951.160 kb on - strand, within Ga0059261_0917at 951.195 kb on + strand, within Ga0059261_0917at 951.195 kb on + strand, within Ga0059261_0917at 951.195 kb on + strand, within Ga0059261_0917at 951.196 kb on - strand, within Ga0059261_0917at 951.196 kb on - strand, within Ga0059261_0917at 951.196 kb on - strand, within Ga0059261_0917at 951.197 kb on + strand, within Ga0059261_0917at 951.197 kb on + strand, within Ga0059261_0917at 951.197 kb on + strand, within Ga0059261_0917at 951.197 kb on + strand, within Ga0059261_0917at 951.198 kb on - strand, within Ga0059261_0917at 951.198 kb on - strand, within Ga0059261_0917at 951.528 kb on + strand, within Ga0059261_0917at 951.529 kb on - strand, within Ga0059261_0917at 951.529 kb on - strand, within Ga0059261_0917at 951.529 kb on - strand, within Ga0059261_0917at 951.529 kb on - strand, within Ga0059261_0917at 951.529 kb on - strand, within Ga0059261_0917at 951.529 kb on - strand, within Ga0059261_0917at 951.549 kb on + strand, within Ga0059261_0917at 951.549 kb on + strand, within Ga0059261_0917at 951.550 kb on - strand, within Ga0059261_0917at 951.624 kb on + strand, within Ga0059261_0917at 951.624 kb on + strand, within Ga0059261_0917at 951.624 kb on + strand, within Ga0059261_0917at 951.625 kb on - strand, within Ga0059261_0917at 951.629 kb on + strand, within Ga0059261_0917at 951.629 kb on + strand, within Ga0059261_0917at 951.629 kb on + strand, within Ga0059261_0917at 951.629 kb on + strand, within Ga0059261_0917at 951.629 kb on + strand, within Ga0059261_0917at 951.630 kb on - strand, within Ga0059261_0917at 951.630 kb on - strand, within Ga0059261_0917at 951.630 kb on - strand, within Ga0059261_0917at 951.630 kb on - strand, within Ga0059261_0917at 951.630 kb on - strand, within Ga0059261_0917at 951.630 kb on - strand, within Ga0059261_0917at 951.766 kb on + strandat 951.766 kb on + strandat 951.766 kb on + strandat 951.828 kb on - strandat 951.907 kb on - strand, within Ga0059261_0918at 951.907 kb on - strand, within Ga0059261_0918at 951.907 kb on - strand, within Ga0059261_0918at 951.933 kb on + strand, within Ga0059261_0918at 951.934 kb on - strand, within Ga0059261_0918at 951.934 kb on - strand, within Ga0059261_0918at 952.177 kb on + strand, within Ga0059261_0918at 952.177 kb on + strand, within Ga0059261_0918at 952.177 kb on + strand, within Ga0059261_0918at 952.177 kb on + strand, within Ga0059261_0918at 952.177 kb on + strand, within Ga0059261_0918at 952.177 kb on + strandat 952.178 kb on - strand, within Ga0059261_0918at 952.178 kb on - strand, within Ga0059261_0918at 952.178 kb on - strand, within Ga0059261_0918at 952.178 kb on - strand, within Ga0059261_0918at 952.178 kb on - strand, within Ga0059261_0918at 952.178 kb on - strand, within Ga0059261_0918at 952.178 kb on - strand, within Ga0059261_0918at 952.637 kb on + strand, within Ga0059261_0920at 952.637 kb on + strand, within Ga0059261_0920at 952.638 kb on - strand, within Ga0059261_0920at 952.638 kb on - strand, within Ga0059261_0920at 952.638 kb on - strand, within Ga0059261_0920at 952.638 kb on - strand, within Ga0059261_0920at 952.791 kb on - strand, within Ga0059261_0920at 952.897 kb on + strand, within Ga0059261_0920at 953.168 kb on + strand, within Ga0059261_0920at 953.168 kb on + strand, within Ga0059261_0920at 953.200 kb on - strand, within Ga0059261_0920at 953.221 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 10 mM
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951,066 - Ga0059261_0917 0.21 -0.8
951,141 + Ga0059261_0917 0.29 -0.8
951,159 + Ga0059261_0917 0.31 +2.0
951,159 + Ga0059261_0917 0.31 -0.3
951,160 - Ga0059261_0917 0.31 +1.2
951,160 - Ga0059261_0917 0.31 -0.3
951,195 + Ga0059261_0917 0.35 +1.1
951,195 + Ga0059261_0917 0.35 -0.6
951,195 + Ga0059261_0917 0.35 +1.1
951,196 - Ga0059261_0917 0.35 -0.3
951,196 - Ga0059261_0917 0.35 -0.2
951,196 - Ga0059261_0917 0.35 +0.0
951,197 + Ga0059261_0917 0.35 +0.5
951,197 + Ga0059261_0917 0.35 -0.4
951,197 + Ga0059261_0917 0.35 +0.2
951,197 + Ga0059261_0917 0.35 -0.2
951,198 - Ga0059261_0917 0.36 +0.1
951,198 - Ga0059261_0917 0.36 +0.2
951,528 + Ga0059261_0917 0.71 +1.0
951,529 - Ga0059261_0917 0.71 -0.9
951,529 - Ga0059261_0917 0.71 +1.6
951,529 - Ga0059261_0917 0.71 -0.5
951,529 - Ga0059261_0917 0.71 -1.2
951,529 - Ga0059261_0917 0.71 -1.7
951,529 - Ga0059261_0917 0.71 +0.6
951,549 + Ga0059261_0917 0.74 -2.2
951,549 + Ga0059261_0917 0.74 -0.4
951,550 - Ga0059261_0917 0.74 +0.1
951,624 + Ga0059261_0917 0.82 -1.0
951,624 + Ga0059261_0917 0.82 -0.2
951,624 + Ga0059261_0917 0.82 +0.0
951,625 - Ga0059261_0917 0.82 -0.5
951,629 + Ga0059261_0917 0.82 -0.5
951,629 + Ga0059261_0917 0.82 +0.1
951,629 + Ga0059261_0917 0.82 +0.7
951,629 + Ga0059261_0917 0.82 -1.5
951,629 + Ga0059261_0917 0.82 +0.2
951,630 - Ga0059261_0917 0.82 -0.8
951,630 - Ga0059261_0917 0.82 -0.4
951,630 - Ga0059261_0917 0.82 -0.8
951,630 - Ga0059261_0917 0.82 -0.1
951,630 - Ga0059261_0917 0.82 -0.3
951,630 - Ga0059261_0917 0.82 -0.3
951,766 + +0.2
951,766 + -0.3
951,766 + -0.3
951,828 - +0.7
951,907 - Ga0059261_0918 0.23 -0.5
951,907 - Ga0059261_0918 0.23 +0.1
951,907 - Ga0059261_0918 0.23 +1.1
951,933 + Ga0059261_0918 0.29 +0.4
951,934 - Ga0059261_0918 0.29 +1.8
951,934 - Ga0059261_0918 0.29 +0.5
952,177 + Ga0059261_0918 0.89 +0.2
952,177 + Ga0059261_0918 0.89 -0.3
952,177 + Ga0059261_0918 0.89 +0.4
952,177 + Ga0059261_0918 0.89 -0.1
952,177 + Ga0059261_0918 0.89 +0.9
952,177 + -0.2
952,178 - Ga0059261_0918 0.89 +1.4
952,178 - Ga0059261_0918 0.89 -0.9
952,178 - Ga0059261_0918 0.89 +0.0
952,178 - Ga0059261_0918 0.89 +0.1
952,178 - Ga0059261_0918 0.89 +0.6
952,178 - Ga0059261_0918 0.89 +0.6
952,178 - Ga0059261_0918 0.89 +0.2
952,637 + Ga0059261_0920 0.18 +0.1
952,637 + Ga0059261_0920 0.18 +0.5
952,638 - Ga0059261_0920 0.18 +0.2
952,638 - Ga0059261_0920 0.18 -1.2
952,638 - Ga0059261_0920 0.18 +0.4
952,638 - Ga0059261_0920 0.18 -0.0
952,791 - Ga0059261_0920 0.37 +1.2
952,897 + Ga0059261_0920 0.51 -0.2
953,168 + Ga0059261_0920 0.84 -0.5
953,168 + Ga0059261_0920 0.84 +0.5
953,200 - Ga0059261_0920 0.88 +0.8
953,221 + +0.6

Or see this region's nucleotide sequence