Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0832

Experiment: sodium fluoride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0829 and Ga0059261_0830 are separated by 13 nucleotidesGa0059261_0830 and Ga0059261_0831 are separated by 52 nucleotidesGa0059261_0831 and Ga0059261_0832 are separated by 44 nucleotidesGa0059261_0832 and Ga0059261_0833 are separated by 69 nucleotides Ga0059261_0829: Ga0059261_0829 - Transcriptional regulators, at 868,433 to 868,921 _0829 Ga0059261_0830: Ga0059261_0830 - Predicted membrane protein, at 868,935 to 869,372 _0830 Ga0059261_0831: Ga0059261_0831 - tRNA, at 869,425 to 869,501 _0831 Ga0059261_0832: Ga0059261_0832 - Predicted permease, at 869,546 to 870,799 _0832 Ga0059261_0833: Ga0059261_0833 - Glycerol kinase, at 870,869 to 872,344 _0833 Position (kb) 869 870 871Strain fitness (log2 ratio) -1 0 1 2at 868.641 kb on + strand, within Ga0059261_0829at 868.641 kb on + strand, within Ga0059261_0829at 868.641 kb on + strand, within Ga0059261_0829at 868.642 kb on - strand, within Ga0059261_0829at 868.790 kb on + strand, within Ga0059261_0829at 868.790 kb on + strand, within Ga0059261_0829at 868.791 kb on - strand, within Ga0059261_0829at 868.791 kb on - strand, within Ga0059261_0829at 868.791 kb on - strand, within Ga0059261_0829at 868.791 kb on - strand, within Ga0059261_0829at 868.791 kb on - strand, within Ga0059261_0829at 868.792 kb on + strand, within Ga0059261_0829at 868.793 kb on - strand, within Ga0059261_0829at 868.793 kb on - strand, within Ga0059261_0829at 868.833 kb on + strand, within Ga0059261_0829at 868.841 kb on + strand, within Ga0059261_0829at 868.841 kb on + strand, within Ga0059261_0829at 868.841 kb on + strand, within Ga0059261_0829at 868.841 kb on + strandat 868.842 kb on - strand, within Ga0059261_0829at 868.842 kb on - strand, within Ga0059261_0829at 868.843 kb on - strand, within Ga0059261_0829at 868.866 kb on + strand, within Ga0059261_0829at 868.866 kb on + strand, within Ga0059261_0829at 868.866 kb on + strand, within Ga0059261_0829at 868.866 kb on + strand, within Ga0059261_0829at 868.867 kb on - strand, within Ga0059261_0829at 868.919 kb on + strandat 868.919 kb on + strandat 868.920 kb on - strandat 868.920 kb on - strandat 868.920 kb on - strandat 869.021 kb on - strand, within Ga0059261_0830at 869.037 kb on + strand, within Ga0059261_0830at 869.037 kb on + strand, within Ga0059261_0830at 869.037 kb on + strand, within Ga0059261_0830at 869.037 kb on + strand, within Ga0059261_0830at 869.038 kb on - strand, within Ga0059261_0830at 869.038 kb on - strand, within Ga0059261_0830at 869.054 kb on + strand, within Ga0059261_0830at 869.054 kb on + strand, within Ga0059261_0830at 869.055 kb on - strand, within Ga0059261_0830at 869.055 kb on - strand, within Ga0059261_0830at 869.055 kb on - strand, within Ga0059261_0830at 869.072 kb on + strand, within Ga0059261_0830at 869.073 kb on - strand, within Ga0059261_0830at 869.073 kb on - strand, within Ga0059261_0830at 869.073 kb on - strand, within Ga0059261_0830at 869.073 kb on - strand, within Ga0059261_0830at 869.145 kb on + strand, within Ga0059261_0830at 869.145 kb on + strand, within Ga0059261_0830at 869.145 kb on + strand, within Ga0059261_0830at 869.145 kb on + strand, within Ga0059261_0830at 869.146 kb on - strand, within Ga0059261_0830at 869.607 kb on - strandat 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strandat 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strand, within Ga0059261_0832at 869.893 kb on - strandat 869.893 kb on - strand, within Ga0059261_0832at 869.893 kb on - strand, within Ga0059261_0832at 869.893 kb on - strand, within Ga0059261_0832at 869.893 kb on - strand, within Ga0059261_0832at 869.893 kb on - strand, within Ga0059261_0832at 869.947 kb on - strand, within Ga0059261_0832at 869.947 kb on - strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.955 kb on + strand, within Ga0059261_0832at 869.956 kb on - strand, within Ga0059261_0832at 869.956 kb on - strand, within Ga0059261_0832at 869.956 kb on - strand, within Ga0059261_0832at 869.956 kb on - strandat 869.956 kb on - strand, within Ga0059261_0832at 869.956 kb on - strand, within Ga0059261_0832at 869.956 kb on - strand, within Ga0059261_0832at 869.956 kb on - strand, within Ga0059261_0832at 869.956 kb on - strand, within Ga0059261_0832at 869.956 kb on - strand, within Ga0059261_0832at 869.956 kb on - strand, within Ga0059261_0832at 869.956 kb on - strand, within Ga0059261_0832at 869.956 kb on - strand, within Ga0059261_0832at 869.956 kb on - strand, within Ga0059261_0832at 870.072 kb on + strand, within Ga0059261_0832at 870.072 kb on + strand, within Ga0059261_0832at 870.072 kb on + strand, within Ga0059261_0832at 870.072 kb on + strand, within Ga0059261_0832at 870.073 kb on - strand, within Ga0059261_0832at 870.073 kb on - strand, within Ga0059261_0832at 870.073 kb on - strand, within Ga0059261_0832at 870.357 kb on + strand, within Ga0059261_0832at 870.357 kb on + strand, within Ga0059261_0832at 870.358 kb on - strand, within Ga0059261_0832at 870.358 kb on - strand, within Ga0059261_0832at 870.358 kb on - strand, within Ga0059261_0832at 870.358 kb on - strand, within Ga0059261_0832at 870.449 kb on + strand, within Ga0059261_0832at 870.450 kb on - strand, within Ga0059261_0832at 870.450 kb on - strand, within Ga0059261_0832at 870.701 kb on - strandat 870.749 kb on + strandat 870.847 kb on + strandat 870.848 kb on - strandat 870.848 kb on - strandat 870.848 kb on - strandat 870.848 kb on - strandat 870.848 kb on - strandat 870.980 kb on + strandat 870.980 kb on + strandat 871.266 kb on - strand, within Ga0059261_0833at 871.266 kb on - strandat 871.640 kb on - strand, within Ga0059261_0833at 871.657 kb on + strand, within Ga0059261_0833at 871.658 kb on - strand, within Ga0059261_0833at 871.757 kb on + strand, within Ga0059261_0833at 871.757 kb on + strand, within Ga0059261_0833at 871.757 kb on + strand, within Ga0059261_0833at 871.757 kb on + strand, within Ga0059261_0833at 871.758 kb on - strand, within Ga0059261_0833at 871.758 kb on - strand, within Ga0059261_0833at 871.758 kb on - strand, within Ga0059261_0833

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 10 mM
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868,641 + Ga0059261_0829 0.43 -0.2
868,641 + Ga0059261_0829 0.43 +0.5
868,641 + Ga0059261_0829 0.43 +0.1
868,642 - Ga0059261_0829 0.43 -0.4
868,790 + Ga0059261_0829 0.73 +0.0
868,790 + Ga0059261_0829 0.73 +0.2
868,791 - Ga0059261_0829 0.73 +0.4
868,791 - Ga0059261_0829 0.73 +0.3
868,791 - Ga0059261_0829 0.73 +0.2
868,791 - Ga0059261_0829 0.73 -0.1
868,791 - Ga0059261_0829 0.73 +0.5
868,792 + Ga0059261_0829 0.73 -0.4
868,793 - Ga0059261_0829 0.74 -0.8
868,793 - Ga0059261_0829 0.74 -0.3
868,833 + Ga0059261_0829 0.82 -1.4
868,841 + Ga0059261_0829 0.83 -0.1
868,841 + Ga0059261_0829 0.83 -0.3
868,841 + Ga0059261_0829 0.83 -1.1
868,841 + -1.0
868,842 - Ga0059261_0829 0.84 +0.1
868,842 - Ga0059261_0829 0.84 +0.2
868,843 - Ga0059261_0829 0.84 +0.8
868,866 + Ga0059261_0829 0.89 -0.9
868,866 + Ga0059261_0829 0.89 +0.4
868,866 + Ga0059261_0829 0.89 +0.1
868,866 + Ga0059261_0829 0.89 -0.1
868,867 - Ga0059261_0829 0.89 +0.2
868,919 + +0.6
868,919 + +0.3
868,920 - +0.8
868,920 - -0.3
868,920 - -1.0
869,021 - Ga0059261_0830 0.20 +0.5
869,037 + Ga0059261_0830 0.23 -0.7
869,037 + Ga0059261_0830 0.23 +0.1
869,037 + Ga0059261_0830 0.23 -0.1
869,037 + Ga0059261_0830 0.23 +0.7
869,038 - Ga0059261_0830 0.24 -0.2
869,038 - Ga0059261_0830 0.24 +0.0
869,054 + Ga0059261_0830 0.27 -0.3
869,054 + Ga0059261_0830 0.27 -0.5
869,055 - Ga0059261_0830 0.27 -0.2
869,055 - Ga0059261_0830 0.27 -0.8
869,055 - Ga0059261_0830 0.27 -0.1
869,072 + Ga0059261_0830 0.31 -0.2
869,073 - Ga0059261_0830 0.32 -0.2
869,073 - Ga0059261_0830 0.32 -0.2
869,073 - Ga0059261_0830 0.32 -0.1
869,073 - Ga0059261_0830 0.32 +0.2
869,145 + Ga0059261_0830 0.48 -0.4
869,145 + Ga0059261_0830 0.48 +0.5
869,145 + Ga0059261_0830 0.48 +0.3
869,145 + Ga0059261_0830 0.48 -1.1
869,146 - Ga0059261_0830 0.48 -1.5
869,607 - +0.6
869,892 + Ga0059261_0832 0.28 +1.1
869,892 + Ga0059261_0832 0.28 +1.3
869,892 + +1.2
869,892 + Ga0059261_0832 0.28 +0.1
869,892 + Ga0059261_0832 0.28 +0.6
869,892 + Ga0059261_0832 0.28 -0.3
869,892 + Ga0059261_0832 0.28 +0.5
869,892 + Ga0059261_0832 0.28 -0.0
869,892 + Ga0059261_0832 0.28 +0.2
869,893 - +1.8
869,893 - Ga0059261_0832 0.28 +0.4
869,893 - Ga0059261_0832 0.28 +0.6
869,893 - Ga0059261_0832 0.28 -0.7
869,893 - Ga0059261_0832 0.28 +0.7
869,893 - Ga0059261_0832 0.28 -0.1
869,947 - Ga0059261_0832 0.32 +0.1
869,947 - Ga0059261_0832 0.32 +0.1
869,955 + Ga0059261_0832 0.33 +0.5
869,955 + Ga0059261_0832 0.33 +0.1
869,955 + Ga0059261_0832 0.33 +0.1
869,955 + Ga0059261_0832 0.33 +0.3
869,955 + Ga0059261_0832 0.33 +0.1
869,955 + Ga0059261_0832 0.33 +0.0
869,955 + Ga0059261_0832 0.33 -0.5
869,955 + Ga0059261_0832 0.33 +0.5
869,955 + Ga0059261_0832 0.33 +0.5
869,955 + Ga0059261_0832 0.33 +0.5
869,955 + Ga0059261_0832 0.33 +0.1
869,955 + Ga0059261_0832 0.33 -0.2
869,955 + Ga0059261_0832 0.33 -0.4
869,955 + Ga0059261_0832 0.33 +0.6
869,955 + Ga0059261_0832 0.33 +1.1
869,956 - Ga0059261_0832 0.33 +0.8
869,956 - Ga0059261_0832 0.33 -0.1
869,956 - Ga0059261_0832 0.33 -0.1
869,956 - +0.8
869,956 - Ga0059261_0832 0.33 +0.0
869,956 - Ga0059261_0832 0.33 -0.2
869,956 - Ga0059261_0832 0.33 +0.3
869,956 - Ga0059261_0832 0.33 -0.3
869,956 - Ga0059261_0832 0.33 +0.8
869,956 - Ga0059261_0832 0.33 -0.8
869,956 - Ga0059261_0832 0.33 +0.1
869,956 - Ga0059261_0832 0.33 -0.4
869,956 - Ga0059261_0832 0.33 +0.3
869,956 - Ga0059261_0832 0.33 +0.5
870,072 + Ga0059261_0832 0.42 -0.1
870,072 + Ga0059261_0832 0.42 -0.3
870,072 + Ga0059261_0832 0.42 +0.4
870,072 + Ga0059261_0832 0.42 +1.0
870,073 - Ga0059261_0832 0.42 -0.6
870,073 - Ga0059261_0832 0.42 +0.7
870,073 - Ga0059261_0832 0.42 +0.5
870,357 + Ga0059261_0832 0.65 +0.2
870,357 + Ga0059261_0832 0.65 -1.0
870,358 - Ga0059261_0832 0.65 -0.1
870,358 - Ga0059261_0832 0.65 -0.0
870,358 - Ga0059261_0832 0.65 -0.2
870,358 - Ga0059261_0832 0.65 +0.2
870,449 + Ga0059261_0832 0.72 +0.4
870,450 - Ga0059261_0832 0.72 +0.2
870,450 - Ga0059261_0832 0.72 -0.5
870,701 - +0.4
870,749 + -0.4
870,847 + +1.5
870,848 - -0.6
870,848 - -1.5
870,848 - +0.6
870,848 - +1.4
870,848 - -0.1
870,980 + +0.0
870,980 + +0.2
871,266 - Ga0059261_0833 0.27 -0.1
871,266 - -0.8
871,640 - Ga0059261_0833 0.52 +0.0
871,657 + Ga0059261_0833 0.53 -1.3
871,658 - Ga0059261_0833 0.53 +0.6
871,757 + Ga0059261_0833 0.60 -0.2
871,757 + Ga0059261_0833 0.60 -0.6
871,757 + Ga0059261_0833 0.60 -0.1
871,757 + Ga0059261_0833 0.60 +1.8
871,758 - Ga0059261_0833 0.60 -0.5
871,758 - Ga0059261_0833 0.60 -0.3
871,758 - Ga0059261_0833 0.60 +0.3

Or see this region's nucleotide sequence