Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0673

Experiment: sodium fluoride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0671 and Ga0059261_0672 are separated by 48 nucleotidesGa0059261_0672 and Ga0059261_0673 overlap by 8 nucleotidesGa0059261_0673 and Ga0059261_0674 are separated by 13 nucleotides Ga0059261_0671: Ga0059261_0671 - Uncharacterized conserved protein, at 708,798 to 709,031 _0671 Ga0059261_0672: Ga0059261_0672 - Domain of unknown function (DUF955), at 709,080 to 709,670 _0672 Ga0059261_0673: Ga0059261_0673 - hypothetical protein, at 709,663 to 710,769 _0673 Ga0059261_0674: Ga0059261_0674 - excinuclease ABC, A subunit, at 710,783 to 713,785 _0674 Position (kb) 709 710 711Strain fitness (log2 ratio) -2 -1 0 1 2 3at 708.942 kb on + strand, within Ga0059261_0671at 708.942 kb on + strand, within Ga0059261_0671at 708.943 kb on - strand, within Ga0059261_0671at 708.943 kb on - strand, within Ga0059261_0671at 708.948 kb on + strand, within Ga0059261_0671at 708.949 kb on - strand, within Ga0059261_0671at 708.949 kb on - strand, within Ga0059261_0671at 708.949 kb on - strandat 708.984 kb on + strand, within Ga0059261_0671at 709.103 kb on - strandat 709.104 kb on + strandat 709.104 kb on + strandat 709.105 kb on - strandat 709.105 kb on - strandat 709.105 kb on - strandat 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.165 kb on + strand, within Ga0059261_0672at 709.166 kb on - strand, within Ga0059261_0672at 709.166 kb on - strand, within Ga0059261_0672at 709.166 kb on - strand, within Ga0059261_0672at 709.247 kb on - strand, within Ga0059261_0672at 709.291 kb on + strand, within Ga0059261_0672at 709.292 kb on - strand, within Ga0059261_0672at 709.320 kb on + strand, within Ga0059261_0672at 709.320 kb on + strand, within Ga0059261_0672at 709.321 kb on - strand, within Ga0059261_0672at 709.649 kb on - strandat 709.719 kb on + strandat 709.724 kb on + strandat 709.724 kb on + strandat 709.765 kb on - strandat 709.765 kb on - strandat 709.901 kb on - strand, within Ga0059261_0673at 709.947 kb on - strand, within Ga0059261_0673at 710.060 kb on + strand, within Ga0059261_0673at 710.060 kb on + strand, within Ga0059261_0673at 710.109 kb on - strand, within Ga0059261_0673at 710.193 kb on + strand, within Ga0059261_0673at 710.231 kb on + strand, within Ga0059261_0673at 710.312 kb on - strand, within Ga0059261_0673at 710.317 kb on - strand, within Ga0059261_0673at 710.617 kb on + strand, within Ga0059261_0673at 710.618 kb on - strand, within Ga0059261_0673at 710.663 kb on - strandat 710.722 kb on - strandat 710.839 kb on - strandat 710.839 kb on - strandat 710.848 kb on + strandat 710.848 kb on + strandat 710.848 kb on + strandat 710.850 kb on + strandat 710.850 kb on + strandat 710.850 kb on + strandat 710.851 kb on - strandat 710.851 kb on - strandat 710.851 kb on - strandat 710.866 kb on + strandat 710.866 kb on + strandat 710.992 kb on + strandat 710.993 kb on - strandat 710.993 kb on - strandat 710.993 kb on - strandat 710.993 kb on - strandat 710.993 kb on - strandat 711.081 kb on + strandat 711.081 kb on + strandat 711.081 kb on + strandat 711.081 kb on + strandat 711.082 kb on - strandat 711.082 kb on - strandat 711.082 kb on - strandat 711.082 kb on - strandat 711.082 kb on - strandat 711.082 kb on - strandat 711.181 kb on + strand, within Ga0059261_0674at 711.181 kb on + strand, within Ga0059261_0674at 711.181 kb on + strand, within Ga0059261_0674at 711.181 kb on + strand, within Ga0059261_0674at 711.181 kb on + strand, within Ga0059261_0674at 711.181 kb on + strand, within Ga0059261_0674at 711.181 kb on + strand, within Ga0059261_0674at 711.181 kb on + strand, within Ga0059261_0674at 711.181 kb on + strand, within Ga0059261_0674at 711.181 kb on + strand, within Ga0059261_0674at 711.182 kb on - strand, within Ga0059261_0674at 711.182 kb on - strand, within Ga0059261_0674at 711.182 kb on - strand, within Ga0059261_0674at 711.183 kb on + strand, within Ga0059261_0674at 711.183 kb on + strand, within Ga0059261_0674at 711.184 kb on - strand, within Ga0059261_0674at 711.184 kb on - strand, within Ga0059261_0674at 711.184 kb on - strand, within Ga0059261_0674at 711.184 kb on - strand, within Ga0059261_0674at 711.330 kb on + strand, within Ga0059261_0674at 711.363 kb on + strand, within Ga0059261_0674at 711.363 kb on + strand, within Ga0059261_0674at 711.363 kb on + strand, within Ga0059261_0674at 711.363 kb on + strand, within Ga0059261_0674at 711.363 kb on + strand, within Ga0059261_0674at 711.364 kb on - strand, within Ga0059261_0674at 711.364 kb on - strand, within Ga0059261_0674at 711.364 kb on - strand, within Ga0059261_0674at 711.364 kb on - strand, within Ga0059261_0674at 711.466 kb on - strand, within Ga0059261_0674at 711.466 kb on - strand, within Ga0059261_0674at 711.531 kb on + strand, within Ga0059261_0674at 711.531 kb on + strand, within Ga0059261_0674at 711.531 kb on + strand, within Ga0059261_0674at 711.531 kb on + strand, within Ga0059261_0674at 711.531 kb on + strand, within Ga0059261_0674at 711.531 kb on + strand, within Ga0059261_0674at 711.531 kb on + strand, within Ga0059261_0674at 711.532 kb on - strand, within Ga0059261_0674at 711.532 kb on - strand, within Ga0059261_0674at 711.532 kb on - strand, within Ga0059261_0674at 711.675 kb on + strand, within Ga0059261_0674

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 10 mM
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708,942 + Ga0059261_0671 0.62 +0.8
708,942 + Ga0059261_0671 0.62 +0.2
708,943 - Ga0059261_0671 0.62 +0.4
708,943 - Ga0059261_0671 0.62 -0.6
708,948 + Ga0059261_0671 0.64 +0.4
708,949 - Ga0059261_0671 0.65 +0.6
708,949 - Ga0059261_0671 0.65 +0.3
708,949 - +0.5
708,984 + Ga0059261_0671 0.79 -0.2
709,103 - +0.1
709,104 + +1.2
709,104 + -0.2
709,105 - +0.9
709,105 - -0.1
709,105 - +0.5
709,140 + Ga0059261_0672 0.10 -1.2
709,140 + Ga0059261_0672 0.10 +1.0
709,140 + Ga0059261_0672 0.10 +0.3
709,140 + Ga0059261_0672 0.10 +1.2
709,140 + Ga0059261_0672 0.10 -0.9
709,140 + Ga0059261_0672 0.10 -0.2
709,140 + Ga0059261_0672 0.10 -0.4
709,140 + Ga0059261_0672 0.10 -0.2
709,141 - Ga0059261_0672 0.10 -0.6
709,141 - Ga0059261_0672 0.10 +0.3
709,141 - Ga0059261_0672 0.10 -1.1
709,141 - Ga0059261_0672 0.10 +0.2
709,141 - Ga0059261_0672 0.10 -0.7
709,141 - Ga0059261_0672 0.10 +1.0
709,141 - Ga0059261_0672 0.10 -0.9
709,141 - Ga0059261_0672 0.10 -0.7
709,165 + Ga0059261_0672 0.14 -0.7
709,166 - Ga0059261_0672 0.15 +0.1
709,166 - Ga0059261_0672 0.15 -1.3
709,166 - Ga0059261_0672 0.15 +0.1
709,247 - Ga0059261_0672 0.28 +0.8
709,291 + Ga0059261_0672 0.36 -0.3
709,292 - Ga0059261_0672 0.36 +0.6
709,320 + Ga0059261_0672 0.41 -0.1
709,320 + Ga0059261_0672 0.41 -0.3
709,321 - Ga0059261_0672 0.41 +0.7
709,649 - +0.2
709,719 + +0.6
709,724 + +0.2
709,724 + +0.3
709,765 - +0.2
709,765 - -0.0
709,901 - Ga0059261_0673 0.21 +0.5
709,947 - Ga0059261_0673 0.26 -0.5
710,060 + Ga0059261_0673 0.36 -0.4
710,060 + Ga0059261_0673 0.36 +0.4
710,109 - Ga0059261_0673 0.40 +0.3
710,193 + Ga0059261_0673 0.48 +0.9
710,231 + Ga0059261_0673 0.51 -0.1
710,312 - Ga0059261_0673 0.59 -0.7
710,317 - Ga0059261_0673 0.59 +0.2
710,617 + Ga0059261_0673 0.86 -0.2
710,618 - Ga0059261_0673 0.86 +1.4
710,663 - -2.1
710,722 - -0.5
710,839 - +0.6
710,839 - +1.2
710,848 + +0.4
710,848 + +1.0
710,848 + -0.3
710,850 + -0.0
710,850 + -0.1
710,850 + -0.3
710,851 - -0.1
710,851 - +1.4
710,851 - +0.5
710,866 + +0.2
710,866 + +0.5
710,992 + +0.3
710,993 - -0.7
710,993 - +1.1
710,993 - -0.9
710,993 - +1.3
710,993 - +1.0
711,081 + +0.1
711,081 + -1.2
711,081 + +1.1
711,081 + +0.1
711,082 - +0.5
711,082 - -0.9
711,082 - +0.6
711,082 - +0.2
711,082 - -1.2
711,082 - +0.4
711,181 + Ga0059261_0674 0.13 +1.5
711,181 + Ga0059261_0674 0.13 +0.1
711,181 + Ga0059261_0674 0.13 -0.5
711,181 + Ga0059261_0674 0.13 +0.6
711,181 + Ga0059261_0674 0.13 +0.2
711,181 + Ga0059261_0674 0.13 +0.3
711,181 + Ga0059261_0674 0.13 -0.3
711,181 + Ga0059261_0674 0.13 +0.8
711,181 + Ga0059261_0674 0.13 -0.5
711,181 + Ga0059261_0674 0.13 +0.5
711,182 - Ga0059261_0674 0.13 +0.1
711,182 - Ga0059261_0674 0.13 +0.5
711,182 - Ga0059261_0674 0.13 +1.0
711,183 + Ga0059261_0674 0.13 -1.0
711,183 + Ga0059261_0674 0.13 -0.5
711,184 - Ga0059261_0674 0.13 -0.4
711,184 - Ga0059261_0674 0.13 -0.1
711,184 - Ga0059261_0674 0.13 +0.7
711,184 - Ga0059261_0674 0.13 -0.5
711,330 + Ga0059261_0674 0.18 +2.8
711,363 + Ga0059261_0674 0.19 -0.0
711,363 + Ga0059261_0674 0.19 +0.5
711,363 + Ga0059261_0674 0.19 +0.6
711,363 + Ga0059261_0674 0.19 -0.4
711,363 + Ga0059261_0674 0.19 -0.3
711,364 - Ga0059261_0674 0.19 +1.3
711,364 - Ga0059261_0674 0.19 +0.5
711,364 - Ga0059261_0674 0.19 -0.7
711,364 - Ga0059261_0674 0.19 +0.2
711,466 - Ga0059261_0674 0.23 -0.1
711,466 - Ga0059261_0674 0.23 -0.1
711,531 + Ga0059261_0674 0.25 +0.3
711,531 + Ga0059261_0674 0.25 -0.4
711,531 + Ga0059261_0674 0.25 +0.4
711,531 + Ga0059261_0674 0.25 -0.4
711,531 + Ga0059261_0674 0.25 -0.2
711,531 + Ga0059261_0674 0.25 +0.3
711,531 + Ga0059261_0674 0.25 +1.5
711,532 - Ga0059261_0674 0.25 -0.2
711,532 - Ga0059261_0674 0.25 +0.4
711,532 - Ga0059261_0674 0.25 +0.5
711,675 + Ga0059261_0674 0.30 +0.1

Or see this region's nucleotide sequence