Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0390

Experiment: sodium fluoride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0389 and Ga0059261_0390 overlap by 4 nucleotidesGa0059261_0390 and Ga0059261_0391 are separated by 3 nucleotides Ga0059261_0389: Ga0059261_0389 - P-type conjugative transfer ATPase TrbB, at 374,031 to 375,041 _0389 Ga0059261_0390: Ga0059261_0390 - Ribbon-helix-helix protein, copG family, at 375,038 to 375,442 _0390 Ga0059261_0391: Ga0059261_0391 - Type IV secretory pathway, VirD4 components, at 375,446 to 377,476 _0391 Position (kb) 375 376Strain fitness (log2 ratio) -2 -1 0 1 2at 374.243 kb on - strand, within Ga0059261_0389at 374.659 kb on + strand, within Ga0059261_0389at 374.659 kb on + strand, within Ga0059261_0389at 374.659 kb on + strand, within Ga0059261_0389at 374.660 kb on - strand, within Ga0059261_0389at 374.660 kb on - strand, within Ga0059261_0389at 374.660 kb on - strand, within Ga0059261_0389at 374.674 kb on + strand, within Ga0059261_0389at 374.674 kb on + strand, within Ga0059261_0389at 374.675 kb on - strand, within Ga0059261_0389at 374.675 kb on - strand, within Ga0059261_0389at 374.675 kb on - strand, within Ga0059261_0389at 374.675 kb on - strand, within Ga0059261_0389at 375.042 kb on - strandat 375.328 kb on - strand, within Ga0059261_0390at 375.328 kb on - strand, within Ga0059261_0390at 375.420 kb on + strandat 375.420 kb on + strandat 375.420 kb on + strandat 375.420 kb on + strandat 375.420 kb on + strandat 375.420 kb on + strandat 375.420 kb on + strandat 375.420 kb on + strandat 375.420 kb on + strandat 375.420 kb on + strandat 375.420 kb on + strandat 375.420 kb on + strandat 375.420 kb on + strandat 375.420 kb on + strandat 375.421 kb on - strandat 375.421 kb on - strandat 375.421 kb on - strandat 375.421 kb on - strandat 375.421 kb on - strandat 375.421 kb on - strandat 375.421 kb on - strandat 375.421 kb on - strandat 375.421 kb on - strandat 375.421 kb on - strandat 375.473 kb on - strandat 375.492 kb on + strandat 375.768 kb on + strand, within Ga0059261_0391at 375.768 kb on + strand, within Ga0059261_0391at 375.768 kb on + strand, within Ga0059261_0391at 375.768 kb on + strand, within Ga0059261_0391at 375.769 kb on - strand, within Ga0059261_0391at 375.769 kb on - strand, within Ga0059261_0391at 375.769 kb on - strand, within Ga0059261_0391at 375.828 kb on + strand, within Ga0059261_0391at 375.828 kb on + strand, within Ga0059261_0391at 375.828 kb on + strand, within Ga0059261_0391at 375.828 kb on + strand, within Ga0059261_0391at 375.828 kb on + strand, within Ga0059261_0391at 375.828 kb on + strand, within Ga0059261_0391at 375.828 kb on + strand, within Ga0059261_0391at 375.828 kb on + strand, within Ga0059261_0391at 375.828 kb on + strand, within Ga0059261_0391at 375.829 kb on - strand, within Ga0059261_0391at 375.829 kb on - strand, within Ga0059261_0391at 375.829 kb on - strand, within Ga0059261_0391at 375.831 kb on + strand, within Ga0059261_0391at 375.832 kb on - strand, within Ga0059261_0391at 375.832 kb on - strand, within Ga0059261_0391at 375.993 kb on + strand, within Ga0059261_0391at 375.993 kb on + strand, within Ga0059261_0391at 375.993 kb on + strand, within Ga0059261_0391at 375.993 kb on + strand, within Ga0059261_0391at 375.993 kb on + strand, within Ga0059261_0391at 375.993 kb on + strand, within Ga0059261_0391at 376.122 kb on + strand, within Ga0059261_0391at 376.122 kb on + strand, within Ga0059261_0391at 376.176 kb on + strand, within Ga0059261_0391at 376.264 kb on + strand, within Ga0059261_0391at 376.264 kb on + strand, within Ga0059261_0391at 376.283 kb on + strand, within Ga0059261_0391at 376.284 kb on - strand, within Ga0059261_0391at 376.380 kb on + strand, within Ga0059261_0391at 376.380 kb on + strand, within Ga0059261_0391at 376.381 kb on - strand, within Ga0059261_0391at 376.381 kb on - strand, within Ga0059261_0391

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 10 mM
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374,243 - Ga0059261_0389 0.21 +0.4
374,659 + Ga0059261_0389 0.62 -0.2
374,659 + Ga0059261_0389 0.62 +0.9
374,659 + Ga0059261_0389 0.62 +0.5
374,660 - Ga0059261_0389 0.62 -0.3
374,660 - Ga0059261_0389 0.62 -0.0
374,660 - Ga0059261_0389 0.62 -0.7
374,674 + Ga0059261_0389 0.64 -0.2
374,674 + Ga0059261_0389 0.64 +0.1
374,675 - Ga0059261_0389 0.64 -0.2
374,675 - Ga0059261_0389 0.64 -0.8
374,675 - Ga0059261_0389 0.64 +0.6
374,675 - Ga0059261_0389 0.64 -0.1
375,042 - -0.3
375,328 - Ga0059261_0390 0.72 +1.1
375,328 - Ga0059261_0390 0.72 +0.3
375,420 + +0.5
375,420 + -0.3
375,420 + -0.4
375,420 + +0.0
375,420 + -0.6
375,420 + +0.2
375,420 + +0.8
375,420 + +0.8
375,420 + -0.2
375,420 + -1.1
375,420 + +1.3
375,420 + -0.1
375,420 + +0.1
375,420 + -1.2
375,421 - -0.5
375,421 - -0.6
375,421 - -0.1
375,421 - -2.2
375,421 - -1.4
375,421 - +0.0
375,421 - -1.1
375,421 - +0.3
375,421 - -0.4
375,421 - +0.1
375,473 - -0.9
375,492 + +0.1
375,768 + Ga0059261_0391 0.16 +0.0
375,768 + Ga0059261_0391 0.16 -0.6
375,768 + Ga0059261_0391 0.16 +0.4
375,768 + Ga0059261_0391 0.16 -0.8
375,769 - Ga0059261_0391 0.16 +0.2
375,769 - Ga0059261_0391 0.16 -0.5
375,769 - Ga0059261_0391 0.16 +0.2
375,828 + Ga0059261_0391 0.19 +1.5
375,828 + Ga0059261_0391 0.19 +0.8
375,828 + Ga0059261_0391 0.19 +0.1
375,828 + Ga0059261_0391 0.19 +0.3
375,828 + Ga0059261_0391 0.19 +0.3
375,828 + Ga0059261_0391 0.19 +0.2
375,828 + Ga0059261_0391 0.19 +0.2
375,828 + Ga0059261_0391 0.19 +0.6
375,828 + Ga0059261_0391 0.19 -0.2
375,829 - Ga0059261_0391 0.19 +0.0
375,829 - Ga0059261_0391 0.19 +0.8
375,829 - Ga0059261_0391 0.19 +0.3
375,831 + Ga0059261_0391 0.19 -0.6
375,832 - Ga0059261_0391 0.19 -0.8
375,832 - Ga0059261_0391 0.19 -0.6
375,993 + Ga0059261_0391 0.27 +0.4
375,993 + Ga0059261_0391 0.27 -0.1
375,993 + Ga0059261_0391 0.27 -0.5
375,993 + Ga0059261_0391 0.27 -0.5
375,993 + Ga0059261_0391 0.27 +0.2
375,993 + Ga0059261_0391 0.27 +0.0
376,122 + Ga0059261_0391 0.33 +1.8
376,122 + Ga0059261_0391 0.33 -0.4
376,176 + Ga0059261_0391 0.36 -0.6
376,264 + Ga0059261_0391 0.40 -0.2
376,264 + Ga0059261_0391 0.40 -0.1
376,283 + Ga0059261_0391 0.41 -0.2
376,284 - Ga0059261_0391 0.41 +0.1
376,380 + Ga0059261_0391 0.46 +0.2
376,380 + Ga0059261_0391 0.46 +0.0
376,381 - Ga0059261_0391 0.46 -0.7
376,381 - Ga0059261_0391 0.46 +0.1

Or see this region's nucleotide sequence