Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0069

Experiment: sodium fluoride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0068 and Ga0059261_0069 are separated by 90 nucleotidesGa0059261_0069 and Ga0059261_0070 overlap by 2 nucleotidesGa0059261_0070 and Ga0059261_0071 are separated by 4 nucleotides Ga0059261_0068: Ga0059261_0068 - acetolactate synthase, large subunit (EC 2.2.1.6), at 59,271 to 61,016 _0068 Ga0059261_0069: Ga0059261_0069 - tRNA dimethylallyltransferase, at 61,107 to 62,030 _0069 Ga0059261_0070: Ga0059261_0070 - phosphoserine phosphatase SerB, at 62,029 to 62,970 _0070 Ga0059261_0071: Ga0059261_0071 - Sporulation related domain/Sel1 repeat, at 62,975 to 63,955 _0071 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1at 60.109 kb on - strand, within Ga0059261_0068at 60.215 kb on - strand, within Ga0059261_0068at 60.226 kb on + strand, within Ga0059261_0068at 60.226 kb on + strand, within Ga0059261_0068at 60.226 kb on + strand, within Ga0059261_0068at 60.226 kb on + strand, within Ga0059261_0068at 60.226 kb on + strand, within Ga0059261_0068at 60.227 kb on - strand, within Ga0059261_0068at 60.227 kb on - strand, within Ga0059261_0068at 60.388 kb on + strand, within Ga0059261_0068at 60.388 kb on + strand, within Ga0059261_0068at 60.389 kb on - strand, within Ga0059261_0068at 60.389 kb on - strand, within Ga0059261_0068at 60.389 kb on - strand, within Ga0059261_0068at 60.389 kb on - strand, within Ga0059261_0068at 60.502 kb on + strand, within Ga0059261_0068at 60.503 kb on - strand, within Ga0059261_0068at 60.503 kb on - strand, within Ga0059261_0068at 60.503 kb on - strand, within Ga0059261_0068at 60.628 kb on + strand, within Ga0059261_0068at 60.629 kb on - strand, within Ga0059261_0068at 60.629 kb on - strand, within Ga0059261_0068at 60.629 kb on - strand, within Ga0059261_0068at 60.835 kb on + strand, within Ga0059261_0068at 60.835 kb on + strand, within Ga0059261_0068at 60.836 kb on - strand, within Ga0059261_0068at 60.888 kb on - strandat 60.917 kb on - strandat 60.917 kb on - strandat 60.927 kb on + strandat 60.928 kb on - strandat 60.928 kb on - strandat 60.928 kb on - strandat 61.019 kb on + strandat 61.019 kb on + strandat 61.019 kb on + strandat 61.019 kb on + strandat 61.019 kb on + strandat 61.020 kb on - strandat 61.020 kb on - strandat 61.020 kb on - strandat 61.020 kb on - strandat 61.020 kb on - strandat 61.020 kb on - strandat 61.050 kb on + strandat 61.199 kb on + strandat 61.199 kb on + strandat 61.199 kb on + strandat 61.199 kb on + strandat 61.199 kb on + strandat 61.199 kb on + strandat 61.200 kb on - strand, within Ga0059261_0069at 61.200 kb on - strand, within Ga0059261_0069at 61.200 kb on - strand, within Ga0059261_0069at 61.201 kb on + strand, within Ga0059261_0069at 61.217 kb on - strandat 61.275 kb on + strand, within Ga0059261_0069at 61.527 kb on + strand, within Ga0059261_0069at 61.615 kb on + strand, within Ga0059261_0069at 61.616 kb on - strand, within Ga0059261_0069at 61.616 kb on - strand, within Ga0059261_0069at 61.707 kb on - strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.804 kb on + strand, within Ga0059261_0069at 61.805 kb on - strandat 61.805 kb on - strand, within Ga0059261_0069at 61.900 kb on + strandat 61.901 kb on - strand, within Ga0059261_0069at 61.901 kb on - strandat 62.105 kb on + strandat 62.105 kb on + strandat 62.105 kb on + strandat 62.105 kb on + strandat 62.105 kb on + strandat 62.105 kb on + strandat 62.105 kb on + strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.106 kb on - strandat 62.112 kb on + strandat 62.112 kb on + strandat 62.126 kb on + strand, within Ga0059261_0070at 62.126 kb on + strand, within Ga0059261_0070at 62.126 kb on + strand, within Ga0059261_0070at 62.126 kb on + strand, within Ga0059261_0070at 62.126 kb on + strand, within Ga0059261_0070at 62.127 kb on - strand, within Ga0059261_0070at 62.127 kb on - strand, within Ga0059261_0070at 62.127 kb on - strand, within Ga0059261_0070at 62.137 kb on - strand, within Ga0059261_0070at 62.137 kb on - strand, within Ga0059261_0070at 62.158 kb on + strand, within Ga0059261_0070at 62.158 kb on + strand, within Ga0059261_0070at 62.158 kb on + strand, within Ga0059261_0070at 62.159 kb on - strand, within Ga0059261_0070at 62.159 kb on - strand, within Ga0059261_0070at 62.389 kb on + strand, within Ga0059261_0070at 62.389 kb on + strand, within Ga0059261_0070at 62.389 kb on + strand, within Ga0059261_0070at 62.389 kb on + strand, within Ga0059261_0070at 62.390 kb on - strand, within Ga0059261_0070at 62.390 kb on - strand, within Ga0059261_0070at 62.390 kb on - strand, within Ga0059261_0070at 62.390 kb on - strand, within Ga0059261_0070at 62.390 kb on - strand, within Ga0059261_0070at 62.932 kb on + strandat 62.932 kb on + strandat 62.933 kb on - strandat 62.933 kb on - strandat 62.976 kb on + strandat 62.976 kb on + strandat 62.976 kb on + strandat 62.977 kb on - strandat 62.977 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 10 mM
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60,109 - Ga0059261_0068 0.48 +1.0
60,215 - Ga0059261_0068 0.54 +0.0
60,226 + Ga0059261_0068 0.55 +0.7
60,226 + Ga0059261_0068 0.55 -0.6
60,226 + Ga0059261_0068 0.55 -1.0
60,226 + Ga0059261_0068 0.55 +0.6
60,226 + Ga0059261_0068 0.55 -0.3
60,227 - Ga0059261_0068 0.55 +0.9
60,227 - Ga0059261_0068 0.55 -0.4
60,388 + Ga0059261_0068 0.64 -1.4
60,388 + Ga0059261_0068 0.64 -0.9
60,389 - Ga0059261_0068 0.64 +0.2
60,389 - Ga0059261_0068 0.64 +0.1
60,389 - Ga0059261_0068 0.64 +0.9
60,389 - Ga0059261_0068 0.64 -0.4
60,502 + Ga0059261_0068 0.71 +0.5
60,503 - Ga0059261_0068 0.71 -0.8
60,503 - Ga0059261_0068 0.71 +0.1
60,503 - Ga0059261_0068 0.71 +1.1
60,628 + Ga0059261_0068 0.78 -0.7
60,629 - Ga0059261_0068 0.78 +0.6
60,629 - Ga0059261_0068 0.78 +0.2
60,629 - Ga0059261_0068 0.78 +0.3
60,835 + Ga0059261_0068 0.90 -1.4
60,835 + Ga0059261_0068 0.90 -1.4
60,836 - Ga0059261_0068 0.90 -0.3
60,888 - -1.2
60,917 - -0.4
60,917 - +0.1
60,927 + -2.2
60,928 - -0.7
60,928 - -1.3
60,928 - +0.5
61,019 + -1.6
61,019 + -1.5
61,019 + -0.5
61,019 + +0.4
61,019 + -0.8
61,020 - -0.1
61,020 - -0.7
61,020 - +0.4
61,020 - +0.2
61,020 - -0.8
61,020 - +0.6
61,050 + +0.5
61,199 + -1.1
61,199 + +0.1
61,199 + +0.2
61,199 + +1.0
61,199 + +0.7
61,199 + +0.0
61,200 - Ga0059261_0069 0.10 +0.2
61,200 - Ga0059261_0069 0.10 -1.7
61,200 - Ga0059261_0069 0.10 +0.4
61,201 + Ga0059261_0069 0.10 +0.2
61,217 - +1.7
61,275 + Ga0059261_0069 0.18 -0.2
61,527 + Ga0059261_0069 0.45 -0.1
61,615 + Ga0059261_0069 0.55 +0.2
61,616 - Ga0059261_0069 0.55 +1.1
61,616 - Ga0059261_0069 0.55 +0.7
61,707 - Ga0059261_0069 0.65 +1.0
61,708 + Ga0059261_0069 0.65 +0.9
61,708 + Ga0059261_0069 0.65 -0.1
61,708 + Ga0059261_0069 0.65 +1.3
61,708 + Ga0059261_0069 0.65 +0.7
61,708 + Ga0059261_0069 0.65 +0.4
61,708 + Ga0059261_0069 0.65 +1.4
61,708 + Ga0059261_0069 0.65 -0.1
61,708 + Ga0059261_0069 0.65 +1.2
61,708 + Ga0059261_0069 0.65 +1.3
61,709 - Ga0059261_0069 0.65 +0.7
61,709 - Ga0059261_0069 0.65 -0.2
61,709 - Ga0059261_0069 0.65 +0.4
61,709 - Ga0059261_0069 0.65 +0.6
61,709 - Ga0059261_0069 0.65 -0.1
61,709 - Ga0059261_0069 0.65 +1.3
61,709 - Ga0059261_0069 0.65 +0.2
61,709 - Ga0059261_0069 0.65 -0.6
61,804 + Ga0059261_0069 0.75 -0.6
61,805 - +1.7
61,805 - Ga0059261_0069 0.76 +1.3
61,900 + -1.3
61,901 - Ga0059261_0069 0.86 +0.6
61,901 - +1.7
62,105 + -0.3
62,105 + +0.5
62,105 + -0.6
62,105 + +0.5
62,105 + +0.8
62,105 + +0.2
62,105 + +0.3
62,106 - +0.2
62,106 - +0.2
62,106 - +0.6
62,106 - +0.3
62,106 - -0.7
62,106 - +0.7
62,106 - +0.5
62,106 - -1.4
62,106 - -1.3
62,112 + +0.0
62,112 + +0.9
62,126 + Ga0059261_0070 0.10 +0.1
62,126 + Ga0059261_0070 0.10 +1.2
62,126 + Ga0059261_0070 0.10 -0.2
62,126 + Ga0059261_0070 0.10 +0.2
62,126 + Ga0059261_0070 0.10 +0.0
62,127 - Ga0059261_0070 0.10 +1.2
62,127 - Ga0059261_0070 0.10 -0.3
62,127 - Ga0059261_0070 0.10 -0.2
62,137 - Ga0059261_0070 0.11 -1.0
62,137 - Ga0059261_0070 0.11 -0.9
62,158 + Ga0059261_0070 0.14 -0.1
62,158 + Ga0059261_0070 0.14 +0.4
62,158 + Ga0059261_0070 0.14 -0.1
62,159 - Ga0059261_0070 0.14 +0.9
62,159 - Ga0059261_0070 0.14 +0.8
62,389 + Ga0059261_0070 0.38 -1.1
62,389 + Ga0059261_0070 0.38 +0.0
62,389 + Ga0059261_0070 0.38 -0.3
62,389 + Ga0059261_0070 0.38 +0.1
62,390 - Ga0059261_0070 0.38 -0.1
62,390 - Ga0059261_0070 0.38 -0.2
62,390 - Ga0059261_0070 0.38 -0.3
62,390 - Ga0059261_0070 0.38 -0.3
62,390 - Ga0059261_0070 0.38 +0.1
62,932 + +0.3
62,932 + -0.1
62,933 - +0.4
62,933 - -0.4
62,976 + -0.4
62,976 + -0.4
62,976 + -0.3
62,977 - +0.2
62,977 - -0.1

Or see this region's nucleotide sequence