Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03629

Experiment: PYE with Thallium(I) acetate 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_03628 and CCNA_03629 are separated by 301 nucleotidesCCNA_03629 and CCNA_03630 overlap by 23 nucleotidesCCNA_03630 and CCNA_03631 are separated by 194 nucleotidesCCNA_03631 and CCNA_03632 are separated by 47 nucleotides CCNA_03628: CCNA_03628 - histidyl-tRNA synthetase, at 3,783,744 to 3,785,231 _03628 CCNA_03629: CCNA_03629 - DNA replication inhibitor toxin SocB, at 3,785,533 to 3,786,246 _03629 CCNA_03630: CCNA_03630 - antitoxin protein SocA, at 3,786,224 to 3,786,790 _03630 CCNA_03631: CCNA_03631 - hypothetical protein, at 3,786,985 to 3,787,089 _03631 CCNA_03632: CCNA_03632 - hypothetical protein, at 3,787,137 to 3,787,517 _03632 Position (kb) 3785 3786 3787Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3785.191 kb on + strandat 3785.199 kb on - strandat 3785.211 kb on - strandat 3785.211 kb on - strandat 3785.237 kb on + strandat 3785.245 kb on - strandat 3785.294 kb on + strandat 3785.299 kb on + strandat 3785.319 kb on + strandat 3785.319 kb on + strandat 3785.319 kb on + strandat 3785.327 kb on - strandat 3785.327 kb on - strandat 3785.327 kb on - strandat 3785.327 kb on - strandat 3785.327 kb on - strandat 3785.327 kb on - strandat 3785.327 kb on - strandat 3785.327 kb on - strandat 3785.327 kb on - strandat 3785.327 kb on - strandat 3785.367 kb on + strandat 3785.396 kb on + strandat 3785.413 kb on + strandat 3785.421 kb on - strandat 3785.441 kb on - strandat 3785.443 kb on - strandat 3785.448 kb on + strandat 3785.475 kb on - strandat 3785.477 kb on - strandat 3785.480 kb on + strandat 3785.488 kb on + strandat 3785.520 kb on - strandat 3785.521 kb on + strandat 3785.529 kb on - strandat 3785.529 kb on - strandat 3785.529 kb on - strandat 3785.544 kb on - strandat 3785.584 kb on - strandat 3785.590 kb on - strandat 3785.590 kb on - strandat 3785.600 kb on - strandat 3785.609 kb on - strand, within CCNA_03629at 3785.612 kb on + strand, within CCNA_03629at 3785.655 kb on + strand, within CCNA_03629at 3785.668 kb on - strand, within CCNA_03629at 3785.723 kb on - strand, within CCNA_03629at 3785.754 kb on - strand, within CCNA_03629at 3785.760 kb on - strand, within CCNA_03629at 3785.760 kb on - strand, within CCNA_03629at 3785.762 kb on - strand, within CCNA_03629at 3785.813 kb on - strand, within CCNA_03629at 3785.893 kb on + strand, within CCNA_03629at 3785.918 kb on + strand, within CCNA_03629at 3786.043 kb on + strand, within CCNA_03629at 3786.058 kb on + strand, within CCNA_03629at 3786.084 kb on - strand, within CCNA_03629at 3786.086 kb on - strand, within CCNA_03629at 3786.091 kb on - strand, within CCNA_03629at 3786.095 kb on + strand, within CCNA_03629at 3786.095 kb on + strand, within CCNA_03629at 3786.100 kb on + strand, within CCNA_03629at 3786.103 kb on - strand, within CCNA_03629at 3786.113 kb on - strand, within CCNA_03629at 3786.181 kb on - strandat 3786.199 kb on - strandat 3786.206 kb on + strandat 3786.219 kb on - strandat 3786.818 kb on + strandat 3786.884 kb on + strandat 3786.893 kb on - strandat 3786.915 kb on + strandat 3786.923 kb on - strandat 3786.952 kb on - strandat 3786.971 kb on + strandat 3786.971 kb on + strandat 3786.983 kb on + strandat 3786.993 kb on - strandat 3787.117 kb on + strandat 3787.128 kb on + strandat 3787.136 kb on - strandat 3787.142 kb on - strandat 3787.145 kb on + strandat 3787.231 kb on + strand, within CCNA_03632

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml
remove
3,785,191 + +0.8
3,785,199 - +0.3
3,785,211 - -0.4
3,785,211 - +0.6
3,785,237 + +0.1
3,785,245 - -0.4
3,785,294 + -0.2
3,785,299 + +1.0
3,785,319 + -1.2
3,785,319 + +2.5
3,785,319 + -0.8
3,785,327 - +0.5
3,785,327 - -0.3
3,785,327 - -1.6
3,785,327 - +0.1
3,785,327 - +1.2
3,785,327 - +0.1
3,785,327 - -0.3
3,785,327 - -0.2
3,785,327 - +0.2
3,785,327 - +0.4
3,785,367 + -1.2
3,785,396 + -0.3
3,785,413 + -0.0
3,785,421 - -0.3
3,785,441 - -2.7
3,785,443 - +1.3
3,785,448 + +0.1
3,785,475 - -0.4
3,785,477 - +0.7
3,785,480 + -0.9
3,785,488 + +0.8
3,785,520 - +0.6
3,785,521 + -0.7
3,785,529 - -0.3
3,785,529 - +0.4
3,785,529 - +0.1
3,785,544 - +0.3
3,785,584 - -0.3
3,785,590 - +0.2
3,785,590 - -0.3
3,785,600 - +0.5
3,785,609 - CCNA_03629 0.11 +0.1
3,785,612 + CCNA_03629 0.11 +0.2
3,785,655 + CCNA_03629 0.17 -1.0
3,785,668 - CCNA_03629 0.19 -0.5
3,785,723 - CCNA_03629 0.27 -2.4
3,785,754 - CCNA_03629 0.31 -1.0
3,785,760 - CCNA_03629 0.32 -0.0
3,785,760 - CCNA_03629 0.32 -1.6
3,785,762 - CCNA_03629 0.32 -1.3
3,785,813 - CCNA_03629 0.39 -1.4
3,785,893 + CCNA_03629 0.50 +0.2
3,785,918 + CCNA_03629 0.54 +1.2
3,786,043 + CCNA_03629 0.71 -0.4
3,786,058 + CCNA_03629 0.74 +0.1
3,786,084 - CCNA_03629 0.77 -3.1
3,786,086 - CCNA_03629 0.77 -0.9
3,786,091 - CCNA_03629 0.78 -0.4
3,786,095 + CCNA_03629 0.79 +0.1
3,786,095 + CCNA_03629 0.79 +1.0
3,786,100 + CCNA_03629 0.79 -1.1
3,786,103 - CCNA_03629 0.80 -2.3
3,786,113 - CCNA_03629 0.81 -0.3
3,786,181 - +3.6
3,786,199 - -0.3
3,786,206 + +0.6
3,786,219 - +0.2
3,786,818 + -1.5
3,786,884 + -1.7
3,786,893 - -0.9
3,786,915 + +0.7
3,786,923 - +0.1
3,786,952 - -0.0
3,786,971 + +1.0
3,786,971 + +0.8
3,786,983 + -1.5
3,786,993 - -0.0
3,787,117 + +1.4
3,787,128 + -0.2
3,787,136 - -0.9
3,787,142 - -1.3
3,787,145 + +0.0
3,787,231 + CCNA_03632 0.25 -1.3

Or see this region's nucleotide sequence