Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03379

Experiment: PYE with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03377 and CCNA_03378 are separated by 171 nucleotidesCCNA_03378 and CCNA_03379 overlap by 4 nucleotidesCCNA_03379 and CCNA_03380 overlap by 1 nucleotidesCCNA_03380 and CCNA_03381 are separated by 122 nucleotides CCNA_03377: CCNA_03377 - hypothetical protein, at 3,550,214 to 3,550,669 _03377 CCNA_03378: CCNA_03378 - inositol monophosphatase family protein, at 3,550,841 to 3,551,641 _03378 CCNA_03379: CCNA_03379 - Cro/CI family transcriptional regulator, at 3,551,638 to 3,551,865 _03379 CCNA_03380: CCNA_03380 - hypothetical protein, at 3,551,865 to 3,552,536 _03380 CCNA_03381: CCNA_03381 - glycerophosphoryl diester phosphodiesterase, at 3,552,659 to 3,553,729 _03381 Position (kb) 3551 3552Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3550.642 kb on + strandat 3550.669 kb on - strandat 3550.669 kb on - strandat 3550.669 kb on - strandat 3550.704 kb on - strandat 3550.704 kb on - strandat 3550.827 kb on + strandat 3550.828 kb on + strandat 3551.635 kb on + strandat 3551.636 kb on + strandat 3551.636 kb on + strandat 3551.741 kb on + strand, within CCNA_03379at 3551.741 kb on + strand, within CCNA_03379at 3551.749 kb on - strand, within CCNA_03379at 3551.749 kb on - strand, within CCNA_03379at 3551.755 kb on - strand, within CCNA_03379at 3551.807 kb on + strand, within CCNA_03379at 3551.855 kb on - strandat 3551.903 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.910 kb on - strandat 3551.941 kb on + strand, within CCNA_03380at 3551.941 kb on - strand, within CCNA_03380at 3551.941 kb on - strand, within CCNA_03380at 3551.941 kb on - strand, within CCNA_03380at 3551.971 kb on + strand, within CCNA_03380at 3551.972 kb on - strand, within CCNA_03380at 3551.979 kb on - strand, within CCNA_03380at 3551.979 kb on - strand, within CCNA_03380at 3551.979 kb on - strand, within CCNA_03380at 3551.979 kb on - strand, within CCNA_03380at 3551.979 kb on - strand, within CCNA_03380at 3551.979 kb on - strand, within CCNA_03380at 3552.035 kb on + strandat 3552.083 kb on - strand, within CCNA_03380at 3552.083 kb on - strand, within CCNA_03380at 3552.099 kb on + strand, within CCNA_03380at 3552.162 kb on - strand, within CCNA_03380at 3552.162 kb on - strand, within CCNA_03380at 3552.210 kb on - strand, within CCNA_03380at 3552.215 kb on - strand, within CCNA_03380at 3552.215 kb on - strand, within CCNA_03380at 3552.259 kb on + strand, within CCNA_03380at 3552.267 kb on - strandat 3552.272 kb on - strand, within CCNA_03380at 3552.272 kb on - strand, within CCNA_03380at 3552.280 kb on + strand, within CCNA_03380at 3552.324 kb on - strand, within CCNA_03380at 3552.324 kb on - strand, within CCNA_03380at 3552.324 kb on - strand, within CCNA_03380at 3552.324 kb on - strand, within CCNA_03380at 3552.326 kb on + strand, within CCNA_03380at 3552.334 kb on - strand, within CCNA_03380at 3552.338 kb on + strand, within CCNA_03380at 3552.351 kb on - strand, within CCNA_03380at 3552.382 kb on + strand, within CCNA_03380at 3552.383 kb on + strand, within CCNA_03380at 3552.458 kb on - strand, within CCNA_03380at 3552.625 kb on - strandat 3552.655 kb on + strandat 3552.663 kb on - strandat 3552.665 kb on + strandat 3552.665 kb on + strandat 3552.665 kb on - strandat 3552.680 kb on + strandat 3552.683 kb on - strandat 3552.688 kb on - strandat 3552.700 kb on + strandat 3552.700 kb on + strandat 3552.708 kb on + strandat 3552.708 kb on - strandat 3552.724 kb on + strandat 3552.727 kb on - strandat 3552.738 kb on + strandat 3552.783 kb on + strand, within CCNA_03381at 3552.797 kb on + strand, within CCNA_03381at 3552.805 kb on - strand, within CCNA_03381at 3552.805 kb on - strand, within CCNA_03381at 3552.826 kb on - strand, within CCNA_03381at 3552.844 kb on + strand, within CCNA_03381at 3552.852 kb on - strand, within CCNA_03381

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml
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3,550,642 + +0.2
3,550,669 - -0.4
3,550,669 - -0.4
3,550,669 - -1.0
3,550,704 - +0.8
3,550,704 - +1.8
3,550,827 + +0.5
3,550,828 + +0.8
3,551,635 + +0.3
3,551,636 + -0.8
3,551,636 + +0.8
3,551,741 + CCNA_03379 0.45 -2.1
3,551,741 + CCNA_03379 0.45 +1.2
3,551,749 - CCNA_03379 0.49 +0.5
3,551,749 - CCNA_03379 0.49 +1.5
3,551,755 - CCNA_03379 0.51 +1.3
3,551,807 + CCNA_03379 0.74 -0.4
3,551,855 - +0.5
3,551,903 - +1.6
3,551,904 - +0.3
3,551,904 - -0.5
3,551,910 - +0.4
3,551,941 + CCNA_03380 0.11 +0.6
3,551,941 - CCNA_03380 0.11 -0.6
3,551,941 - CCNA_03380 0.11 -0.7
3,551,941 - CCNA_03380 0.11 +1.3
3,551,971 + CCNA_03380 0.16 +1.5
3,551,972 - CCNA_03380 0.16 -0.3
3,551,979 - CCNA_03380 0.17 +1.2
3,551,979 - CCNA_03380 0.17 -0.1
3,551,979 - CCNA_03380 0.17 -1.4
3,551,979 - CCNA_03380 0.17 -0.1
3,551,979 - CCNA_03380 0.17 +1.8
3,551,979 - CCNA_03380 0.17 +1.0
3,552,035 + +0.6
3,552,083 - CCNA_03380 0.32 -0.6
3,552,083 - CCNA_03380 0.32 +0.8
3,552,099 + CCNA_03380 0.35 +1.0
3,552,162 - CCNA_03380 0.44 -0.1
3,552,162 - CCNA_03380 0.44 +1.1
3,552,210 - CCNA_03380 0.51 -1.9
3,552,215 - CCNA_03380 0.52 -0.1
3,552,215 - CCNA_03380 0.52 -1.1
3,552,259 + CCNA_03380 0.59 -0.5
3,552,267 - +1.8
3,552,272 - CCNA_03380 0.61 +0.4
3,552,272 - CCNA_03380 0.61 +1.5
3,552,280 + CCNA_03380 0.62 +1.2
3,552,324 - CCNA_03380 0.68 -1.6
3,552,324 - CCNA_03380 0.68 -0.8
3,552,324 - CCNA_03380 0.68 -0.6
3,552,324 - CCNA_03380 0.68 -1.2
3,552,326 + CCNA_03380 0.69 -0.8
3,552,334 - CCNA_03380 0.70 -0.1
3,552,338 + CCNA_03380 0.70 -1.7
3,552,351 - CCNA_03380 0.72 +1.0
3,552,382 + CCNA_03380 0.77 +0.0
3,552,383 + CCNA_03380 0.77 +0.5
3,552,458 - CCNA_03380 0.88 +0.7
3,552,625 - -2.5
3,552,655 + -0.3
3,552,663 - -0.5
3,552,665 + -0.4
3,552,665 + -1.6
3,552,665 - -0.9
3,552,680 + -1.2
3,552,683 - +0.4
3,552,688 - +1.2
3,552,700 + -0.4
3,552,700 + -0.4
3,552,708 + +0.5
3,552,708 - -2.1
3,552,724 + +0.8
3,552,727 - -1.5
3,552,738 + -0.3
3,552,783 + CCNA_03381 0.12 +3.4
3,552,797 + CCNA_03381 0.13 +2.1
3,552,805 - CCNA_03381 0.14 -0.6
3,552,805 - CCNA_03381 0.14 -0.9
3,552,826 - CCNA_03381 0.16 +1.2
3,552,844 + CCNA_03381 0.17 +0.2
3,552,852 - CCNA_03381 0.18 +0.0

Or see this region's nucleotide sequence