Experiment: PYE with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03310 and CCNA_03311 are separated by 10 nucleotides CCNA_03311 and CCNA_R0076 are separated by 98 nucleotides CCNA_R0076 and CCNA_03312 are separated by 234 nucleotides CCNA_03312 and CCNA_03313 are separated by 16 nucleotides CCNA_03313 and CCNA_03314 are separated by 377 nucleotides
CCNA_03310: CCNA_03310 - transcription antitermination protein NusG, at 3,486,449 to 3,487,006
_03310
CCNA_03311: CCNA_03311 - protein translocase subunit SecE, at 3,487,017 to 3,487,334
_03311
CCNA_R0076: CCNA_R0076 - tRNA-Trp, at 3,487,433 to 3,487,508
_R0076
CCNA_03312: CCNA_03312 - hypothetical protein, at 3,487,743 to 3,487,922
_03312
CCNA_03313: CCNA_03313 - hypothetical protein, at 3,487,939 to 3,488,355
_03313
CCNA_03314: CCNA_03314 - ferredoxin-NADP reductase, at 3,488,733 to 3,489,665
_03314
Position (kb)
3487
3488 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3487.668 kb on + strand at 3487.668 kb on + strand at 3487.669 kb on + strand at 3487.669 kb on + strand at 3487.676 kb on - strand at 3487.676 kb on - strand at 3487.683 kb on + strand at 3487.691 kb on - strand at 3487.693 kb on + strand at 3487.696 kb on - strand at 3487.705 kb on + strand at 3487.825 kb on + strand, within CCNA_03312 at 3487.835 kb on + strand, within CCNA_03312 at 3487.843 kb on - strand, within CCNA_03312 at 3487.884 kb on + strand, within CCNA_03312 at 3487.890 kb on - strand, within CCNA_03312 at 3487.899 kb on + strand, within CCNA_03312 at 3487.899 kb on + strand, within CCNA_03312 at 3487.907 kb on - strand at 3487.907 kb on - strand at 3487.926 kb on - strand at 3487.955 kb on + strand at 3487.963 kb on - strand at 3487.963 kb on - strand at 3488.033 kb on - strand, within CCNA_03313 at 3488.072 kb on - strand, within CCNA_03313 at 3488.075 kb on + strand, within CCNA_03313 at 3488.082 kb on - strand, within CCNA_03313 at 3488.083 kb on - strand, within CCNA_03313 at 3488.089 kb on - strand, within CCNA_03313 at 3488.089 kb on - strand, within CCNA_03313 at 3488.126 kb on - strand, within CCNA_03313 at 3488.142 kb on - strand, within CCNA_03313 at 3488.151 kb on - strand, within CCNA_03313 at 3488.169 kb on + strand, within CCNA_03313 at 3488.185 kb on + strand, within CCNA_03313 at 3488.212 kb on + strand, within CCNA_03313 at 3488.212 kb on + strand, within CCNA_03313 at 3488.220 kb on - strand, within CCNA_03313 at 3488.240 kb on + strand, within CCNA_03313 at 3488.261 kb on - strand, within CCNA_03313 at 3488.264 kb on + strand, within CCNA_03313 at 3488.272 kb on - strand, within CCNA_03313 at 3488.272 kb on - strand, within CCNA_03313 at 3488.272 kb on - strand, within CCNA_03313 at 3488.272 kb on - strand, within CCNA_03313 at 3488.272 kb on - strand, within CCNA_03313 at 3488.272 kb on - strand, within CCNA_03313 at 3488.272 kb on - strand, within CCNA_03313 at 3488.274 kb on - strand, within CCNA_03313 at 3488.286 kb on + strand, within CCNA_03313 at 3488.310 kb on + strand, within CCNA_03313 at 3488.318 kb on - strand at 3488.318 kb on - strand at 3488.361 kb on + strand at 3488.530 kb on - strand at 3488.628 kb on + strand at 3488.636 kb on - strand at 3488.636 kb on - strand at 3488.647 kb on + strand at 3488.647 kb on + strand at 3488.647 kb on + strand at 3488.647 kb on + strand at 3488.647 kb on + strand at 3488.647 kb on + strand at 3488.647 kb on + strand at 3488.647 kb on + strand at 3488.647 kb on + strand at 3488.647 kb on + strand at 3488.647 kb on + strand at 3488.655 kb on - strand at 3488.655 kb on - strand at 3488.655 kb on - strand at 3488.655 kb on - strand at 3488.655 kb on - strand at 3488.655 kb on - strand at 3488.655 kb on - strand at 3488.691 kb on + strand at 3488.691 kb on + strand at 3488.691 kb on + strand at 3488.699 kb on - strand at 3488.722 kb on + strand at 3488.730 kb on - strand at 3488.732 kb on + strand at 3488.732 kb on + strand at 3488.756 kb on + strand at 3488.774 kb on - strand at 3488.779 kb on + strand at 3488.832 kb on + strand, within CCNA_03314 at 3488.832 kb on + strand, within CCNA_03314
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml remove 3,487,668 + -0.1 3,487,668 + -0.6 3,487,669 + +0.6 3,487,669 + -1.0 3,487,676 - -0.5 3,487,676 - -1.6 3,487,683 + -0.9 3,487,691 - +0.1 3,487,693 + -0.1 3,487,696 - -1.4 3,487,705 + -2.1 3,487,825 + CCNA_03312 0.46 +0.4 3,487,835 + CCNA_03312 0.51 -0.7 3,487,843 - CCNA_03312 0.56 -1.1 3,487,884 + CCNA_03312 0.78 +0.3 3,487,890 - CCNA_03312 0.82 -2.1 3,487,899 + CCNA_03312 0.87 +1.1 3,487,899 + CCNA_03312 0.87 -1.6 3,487,907 - +1.1 3,487,907 - +1.6 3,487,926 - +0.3 3,487,955 + +0.3 3,487,963 - -0.4 3,487,963 - -0.6 3,488,033 - CCNA_03313 0.23 -0.3 3,488,072 - CCNA_03313 0.32 -1.6 3,488,075 + CCNA_03313 0.33 +0.7 3,488,082 - CCNA_03313 0.34 +1.3 3,488,083 - CCNA_03313 0.35 -0.3 3,488,089 - CCNA_03313 0.36 -1.7 3,488,089 - CCNA_03313 0.36 -0.9 3,488,126 - CCNA_03313 0.45 -0.0 3,488,142 - CCNA_03313 0.49 -0.3 3,488,151 - CCNA_03313 0.51 -0.7 3,488,169 + CCNA_03313 0.55 +0.6 3,488,185 + CCNA_03313 0.59 -0.9 3,488,212 + CCNA_03313 0.65 +0.6 3,488,212 + CCNA_03313 0.65 +0.2 3,488,220 - CCNA_03313 0.67 -0.6 3,488,240 + CCNA_03313 0.72 +1.6 3,488,261 - CCNA_03313 0.77 -0.1 3,488,264 + CCNA_03313 0.78 +0.3 3,488,272 - CCNA_03313 0.80 -0.6 3,488,272 - CCNA_03313 0.80 -1.0 3,488,272 - CCNA_03313 0.80 -2.4 3,488,272 - CCNA_03313 0.80 +0.2 3,488,272 - CCNA_03313 0.80 -1.5 3,488,272 - CCNA_03313 0.80 +0.0 3,488,272 - CCNA_03313 0.80 +1.3 3,488,274 - CCNA_03313 0.80 -2.6 3,488,286 + CCNA_03313 0.83 -0.0 3,488,310 + CCNA_03313 0.89 -0.8 3,488,318 - +0.5 3,488,318 - -1.1 3,488,361 + -0.0 3,488,530 - -0.1 3,488,628 + +2.1 3,488,636 - -0.8 3,488,636 - +0.9 3,488,647 + -0.6 3,488,647 + +0.2 3,488,647 + +0.9 3,488,647 + -0.6 3,488,647 + +0.1 3,488,647 + -1.2 3,488,647 + -0.1 3,488,647 + +0.5 3,488,647 + -0.5 3,488,647 + +1.8 3,488,647 + +0.1 3,488,655 - -0.3 3,488,655 - -2.0 3,488,655 - +0.3 3,488,655 - -0.9 3,488,655 - +1.3 3,488,655 - +0.6 3,488,655 - -0.4 3,488,691 + -0.2 3,488,691 + +0.4 3,488,691 + -0.6 3,488,699 - +1.0 3,488,722 + -0.1 3,488,730 - +0.5 3,488,732 + -0.0 3,488,732 + -0.1 3,488,756 + +0.7 3,488,774 - +2.2 3,488,779 + -0.2 3,488,832 + CCNA_03314 0.11 -0.3 3,488,832 + CCNA_03314 0.11 -0.3
Or see this region's nucleotide sequence