Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03030

Experiment: PYE with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03028 and CCNA_03029 overlap by 4 nucleotidesCCNA_03029 and CCNA_03030 are separated by 156 nucleotidesCCNA_03030 and CCNA_03031 are separated by 213 nucleotides CCNA_03028: CCNA_03028 - prephenate dehydratase, at 3,183,110 to 3,183,961 _03028 CCNA_03029: CCNA_03029 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 3,183,958 to 3,184,695 _03029 CCNA_03030: CCNA_03030 - cytochrome c2, at 3,184,852 to 3,185,538 _03030 CCNA_03031: CCNA_03031 - NlpC/P60 family protein, at 3,185,752 to 3,186,591 _03031 Position (kb) 3184 3185 3186Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3183.858 kb on - strand, within CCNA_03028at 3183.858 kb on - strand, within CCNA_03028at 3183.874 kb on - strand, within CCNA_03028at 3183.912 kb on - strandat 3183.912 kb on - strandat 3183.953 kb on - strandat 3183.964 kb on + strandat 3183.967 kb on - strandat 3184.688 kb on + strandat 3184.706 kb on - strandat 3184.706 kb on - strandat 3184.728 kb on + strandat 3184.770 kb on + strandat 3184.770 kb on + strandat 3184.780 kb on - strandat 3184.802 kb on + strandat 3184.802 kb on + strandat 3184.802 kb on + strandat 3184.815 kb on + strandat 3184.869 kb on + strandat 3184.886 kb on + strandat 3184.929 kb on + strand, within CCNA_03030at 3185.016 kb on + strand, within CCNA_03030at 3185.091 kb on + strand, within CCNA_03030at 3185.117 kb on + strand, within CCNA_03030at 3185.143 kb on + strand, within CCNA_03030at 3185.185 kb on + strand, within CCNA_03030at 3185.204 kb on + strand, within CCNA_03030at 3185.232 kb on + strand, within CCNA_03030at 3185.298 kb on + strand, within CCNA_03030at 3185.360 kb on + strand, within CCNA_03030at 3185.391 kb on + strand, within CCNA_03030at 3185.449 kb on + strand, within CCNA_03030at 3185.491 kb on + strandat 3185.491 kb on + strandat 3185.616 kb on - strandat 3185.659 kb on + strandat 3185.661 kb on + strandat 3185.661 kb on + strandat 3185.669 kb on + strandat 3185.669 kb on - strandat 3185.669 kb on - strandat 3185.731 kb on + strandat 3185.749 kb on + strandat 3185.767 kb on + strandat 3185.767 kb on + strandat 3185.775 kb on - strandat 3185.928 kb on - strand, within CCNA_03031at 3185.994 kb on - strand, within CCNA_03031at 3185.999 kb on + strand, within CCNA_03031at 3186.006 kb on - strand, within CCNA_03031at 3186.006 kb on - strand, within CCNA_03031at 3186.006 kb on - strand, within CCNA_03031at 3186.021 kb on + strand, within CCNA_03031at 3186.029 kb on - strand, within CCNA_03031at 3186.031 kb on + strand, within CCNA_03031at 3186.031 kb on + strand, within CCNA_03031at 3186.031 kb on + strand, within CCNA_03031at 3186.039 kb on - strand, within CCNA_03031at 3186.039 kb on - strand, within CCNA_03031at 3186.039 kb on - strand, within CCNA_03031at 3186.039 kb on - strand, within CCNA_03031at 3186.039 kb on - strand, within CCNA_03031at 3186.044 kb on - strand, within CCNA_03031at 3186.068 kb on + strand, within CCNA_03031at 3186.071 kb on - strand, within CCNA_03031at 3186.107 kb on + strand, within CCNA_03031at 3186.127 kb on - strand, within CCNA_03031at 3186.175 kb on - strand, within CCNA_03031at 3186.197 kb on + strand, within CCNA_03031at 3186.200 kb on - strand, within CCNA_03031at 3186.200 kb on - strand, within CCNA_03031at 3186.202 kb on + strand, within CCNA_03031at 3186.205 kb on - strand, within CCNA_03031at 3186.233 kb on - strand, within CCNA_03031at 3186.242 kb on - strand, within CCNA_03031at 3186.257 kb on + strand, within CCNA_03031at 3186.318 kb on + strand, within CCNA_03031at 3186.328 kb on - strand, within CCNA_03031at 3186.330 kb on + strand, within CCNA_03031at 3186.330 kb on + strand, within CCNA_03031at 3186.338 kb on - strand, within CCNA_03031at 3186.363 kb on + strand, within CCNA_03031at 3186.481 kb on + strand, within CCNA_03031at 3186.499 kb on - strand, within CCNA_03031at 3186.523 kb on - strandat 3186.523 kb on - strandat 3186.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml
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3,183,858 - CCNA_03028 0.88 -0.2
3,183,858 - CCNA_03028 0.88 +0.2
3,183,874 - CCNA_03028 0.90 -1.3
3,183,912 - +1.6
3,183,912 - +0.6
3,183,953 - +0.3
3,183,964 + -1.3
3,183,967 - -0.9
3,184,688 + +0.1
3,184,706 - +2.4
3,184,706 - -0.5
3,184,728 + +2.4
3,184,770 + -0.1
3,184,770 + +3.9
3,184,780 - +1.9
3,184,802 + -0.0
3,184,802 + +0.4
3,184,802 + +0.3
3,184,815 + -0.6
3,184,869 + +0.2
3,184,886 + +0.5
3,184,929 + CCNA_03030 0.11 +0.7
3,185,016 + CCNA_03030 0.24 -1.3
3,185,091 + CCNA_03030 0.35 -1.5
3,185,117 + CCNA_03030 0.39 +0.4
3,185,143 + CCNA_03030 0.42 -1.5
3,185,185 + CCNA_03030 0.48 +0.0
3,185,204 + CCNA_03030 0.51 +1.7
3,185,232 + CCNA_03030 0.55 +1.5
3,185,298 + CCNA_03030 0.65 +0.1
3,185,360 + CCNA_03030 0.74 -0.5
3,185,391 + CCNA_03030 0.78 +1.0
3,185,449 + CCNA_03030 0.87 +0.0
3,185,491 + +0.5
3,185,491 + +1.2
3,185,616 - -1.2
3,185,659 + -0.2
3,185,661 + -0.3
3,185,661 + -1.8
3,185,669 + -0.3
3,185,669 - -0.4
3,185,669 - -0.1
3,185,731 + -0.5
3,185,749 + -1.9
3,185,767 + -0.1
3,185,767 + +0.8
3,185,775 - -1.0
3,185,928 - CCNA_03031 0.21 +0.6
3,185,994 - CCNA_03031 0.29 -0.6
3,185,999 + CCNA_03031 0.29 +0.1
3,186,006 - CCNA_03031 0.30 -0.4
3,186,006 - CCNA_03031 0.30 -0.1
3,186,006 - CCNA_03031 0.30 -1.9
3,186,021 + CCNA_03031 0.32 -0.1
3,186,029 - CCNA_03031 0.33 -0.1
3,186,031 + CCNA_03031 0.33 -0.1
3,186,031 + CCNA_03031 0.33 +1.1
3,186,031 + CCNA_03031 0.33 +0.1
3,186,039 - CCNA_03031 0.34 -1.7
3,186,039 - CCNA_03031 0.34 -0.3
3,186,039 - CCNA_03031 0.34 +1.1
3,186,039 - CCNA_03031 0.34 -1.5
3,186,039 - CCNA_03031 0.34 +0.0
3,186,044 - CCNA_03031 0.35 +0.1
3,186,068 + CCNA_03031 0.38 +0.0
3,186,071 - CCNA_03031 0.38 -1.2
3,186,107 + CCNA_03031 0.42 +0.5
3,186,127 - CCNA_03031 0.45 +0.1
3,186,175 - CCNA_03031 0.50 +0.1
3,186,197 + CCNA_03031 0.53 -0.4
3,186,200 - CCNA_03031 0.53 +0.0
3,186,200 - CCNA_03031 0.53 +0.8
3,186,202 + CCNA_03031 0.54 -0.3
3,186,205 - CCNA_03031 0.54 +1.9
3,186,233 - CCNA_03031 0.57 +1.4
3,186,242 - CCNA_03031 0.58 -1.6
3,186,257 + CCNA_03031 0.60 +0.6
3,186,318 + CCNA_03031 0.67 -0.3
3,186,328 - CCNA_03031 0.69 -1.3
3,186,330 + CCNA_03031 0.69 +0.1
3,186,330 + CCNA_03031 0.69 -0.4
3,186,338 - CCNA_03031 0.70 -0.5
3,186,363 + CCNA_03031 0.73 +0.5
3,186,481 + CCNA_03031 0.87 +0.5
3,186,499 - CCNA_03031 0.89 -0.1
3,186,523 - +1.4
3,186,523 - +1.0
3,186,523 - -2.2

Or see this region's nucleotide sequence