Experiment: PYE with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01057 and CCNA_01058 are separated by 82 nucleotides CCNA_01058 and CCNA_01059 are separated by 263 nucleotides CCNA_01059 and CCNA_01060 are separated by 242 nucleotides
CCNA_01057: CCNA_01057 - hypothetical protein, at 1,157,551 to 1,159,047
_01057
CCNA_01058: CCNA_01058 - helix-turn-helix transcriptional regulator, at 1,159,130 to 1,159,429
_01058
CCNA_01059: CCNA_01059 - S-layer protein rsaA, at 1,159,693 to 1,162,773
_01059
CCNA_01060: CCNA_01060 - type I protein secretion ATP-binding protein RsaD, at 1,163,016 to 1,164,752
_01060
Position (kb)
1159
1160
1161
1162
1163 Strain fitness (log2 ratio)
-1
0
1
2 at 1158.743 kb on + strand, within CCNA_01057 at 1158.765 kb on + strand, within CCNA_01057 at 1158.773 kb on - strand, within CCNA_01057 at 1158.773 kb on - strand, within CCNA_01057 at 1158.786 kb on + strand, within CCNA_01057 at 1158.889 kb on - strand, within CCNA_01057 at 1158.911 kb on + strand at 1158.977 kb on - strand at 1159.036 kb on - strand at 1159.059 kb on - strand at 1159.069 kb on - strand at 1159.070 kb on - strand at 1159.218 kb on - strand, within CCNA_01058 at 1159.219 kb on - strand, within CCNA_01058 at 1159.264 kb on - strand, within CCNA_01058 at 1159.342 kb on - strand, within CCNA_01058 at 1159.393 kb on - strand, within CCNA_01058 at 1159.429 kb on + strand at 1159.437 kb on - strand at 1159.437 kb on - strand at 1159.462 kb on - strand at 1159.490 kb on + strand at 1159.514 kb on - strand at 1159.525 kb on + strand at 1159.535 kb on - strand at 1159.616 kb on + strand at 1159.653 kb on + strand at 1159.713 kb on + strand at 1159.713 kb on + strand at 1159.713 kb on + strand at 1159.713 kb on + strand at 1159.723 kb on + strand at 1159.723 kb on + strand at 1159.723 kb on + strand at 1159.733 kb on + strand at 1159.740 kb on + strand at 1159.823 kb on + strand at 1159.833 kb on + strand at 1159.841 kb on + strand at 1159.841 kb on + strand at 1159.841 kb on + strand at 1159.841 kb on + strand at 1159.867 kb on + strand at 1160.235 kb on + strand, within CCNA_01059 at 1160.280 kb on + strand, within CCNA_01059 at 1160.280 kb on + strand, within CCNA_01059 at 1160.421 kb on + strand, within CCNA_01059 at 1160.438 kb on + strand, within CCNA_01059 at 1160.737 kb on + strand, within CCNA_01059 at 1160.737 kb on + strand, within CCNA_01059 at 1160.737 kb on + strand, within CCNA_01059 at 1160.737 kb on + strand, within CCNA_01059 at 1160.761 kb on + strand, within CCNA_01059 at 1160.761 kb on + strand, within CCNA_01059 at 1160.761 kb on + strand, within CCNA_01059 at 1160.848 kb on + strand, within CCNA_01059 at 1160.936 kb on + strand, within CCNA_01059 at 1161.045 kb on + strand, within CCNA_01059 at 1161.539 kb on + strand, within CCNA_01059 at 1161.539 kb on + strand, within CCNA_01059 at 1161.766 kb on + strand, within CCNA_01059 at 1161.814 kb on + strand, within CCNA_01059 at 1161.944 kb on + strand, within CCNA_01059 at 1161.969 kb on + strand, within CCNA_01059 at 1162.257 kb on + strand, within CCNA_01059 at 1162.359 kb on + strand, within CCNA_01059 at 1162.359 kb on + strand, within CCNA_01059 at 1162.382 kb on + strand, within CCNA_01059 at 1162.796 kb on + strand at 1162.888 kb on - strand at 1162.981 kb on - strand at 1163.057 kb on + strand at 1163.087 kb on - strand at 1163.265 kb on - strand, within CCNA_01060 at 1163.315 kb on + strand, within CCNA_01060 at 1163.396 kb on + strand, within CCNA_01060 at 1163.404 kb on - strand, within CCNA_01060 at 1163.613 kb on - strand, within CCNA_01060 at 1163.636 kb on + strand, within CCNA_01060 at 1163.764 kb on - strand, within CCNA_01060
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml remove 1,158,743 + CCNA_01057 0.80 +0.1 1,158,765 + CCNA_01057 0.81 -1.4 1,158,773 - CCNA_01057 0.82 +0.6 1,158,773 - CCNA_01057 0.82 +0.9 1,158,786 + CCNA_01057 0.82 -1.5 1,158,889 - CCNA_01057 0.89 -1.2 1,158,911 + +0.5 1,158,977 - +0.2 1,159,036 - -1.5 1,159,059 - -0.2 1,159,069 - -0.8 1,159,070 - -0.5 1,159,218 - CCNA_01058 0.29 +0.8 1,159,219 - CCNA_01058 0.30 +0.4 1,159,264 - CCNA_01058 0.45 +1.5 1,159,342 - CCNA_01058 0.71 +1.2 1,159,393 - CCNA_01058 0.88 +1.0 1,159,429 + -0.8 1,159,437 - +0.6 1,159,437 - -1.1 1,159,462 - +0.9 1,159,490 + -1.1 1,159,514 - +0.5 1,159,525 + +0.6 1,159,535 - +0.5 1,159,616 + +1.1 1,159,653 + -0.2 1,159,713 + +0.5 1,159,713 + +0.5 1,159,713 + +0.1 1,159,713 + +0.3 1,159,723 + +0.4 1,159,723 + +0.5 1,159,723 + +0.9 1,159,733 + +0.6 1,159,740 + +0.1 1,159,823 + +0.6 1,159,833 + +0.1 1,159,841 + +0.6 1,159,841 + +0.7 1,159,841 + +0.6 1,159,841 + +0.7 1,159,867 + +0.2 1,160,235 + CCNA_01059 0.18 +0.7 1,160,280 + CCNA_01059 0.19 +0.7 1,160,280 + CCNA_01059 0.19 +0.9 1,160,421 + CCNA_01059 0.24 +0.8 1,160,438 + CCNA_01059 0.24 +0.7 1,160,737 + CCNA_01059 0.34 +1.2 1,160,737 + CCNA_01059 0.34 +0.8 1,160,737 + CCNA_01059 0.34 +1.5 1,160,737 + CCNA_01059 0.34 +1.1 1,160,761 + CCNA_01059 0.35 +1.2 1,160,761 + CCNA_01059 0.35 +1.0 1,160,761 + CCNA_01059 0.35 +0.5 1,160,848 + CCNA_01059 0.37 +2.7 1,160,936 + CCNA_01059 0.40 +0.7 1,161,045 + CCNA_01059 0.44 -0.9 1,161,539 + CCNA_01059 0.60 +1.0 1,161,539 + CCNA_01059 0.60 +0.4 1,161,766 + CCNA_01059 0.67 +1.5 1,161,814 + CCNA_01059 0.69 +1.8 1,161,944 + CCNA_01059 0.73 +1.2 1,161,969 + CCNA_01059 0.74 +1.3 1,162,257 + CCNA_01059 0.83 +1.7 1,162,359 + CCNA_01059 0.87 +0.7 1,162,359 + CCNA_01059 0.87 +1.3 1,162,382 + CCNA_01059 0.87 +1.4 1,162,796 + +0.7 1,162,888 - -0.0 1,162,981 - -0.3 1,163,057 + -0.0 1,163,087 - +2.5 1,163,265 - CCNA_01060 0.14 +1.8 1,163,315 + CCNA_01060 0.17 -1.3 1,163,396 + CCNA_01060 0.22 +2.6 1,163,404 - CCNA_01060 0.22 +0.2 1,163,613 - CCNA_01060 0.34 -0.4 1,163,636 + CCNA_01060 0.36 +1.8 1,163,764 - CCNA_01060 0.43 +0.3
Or see this region's nucleotide sequence