Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00805

Experiment: PYE with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00803 and CCNA_00804 are separated by 64 nucleotidesCCNA_00804 and CCNA_00805 are separated by 229 nucleotidesCCNA_00805 and CCNA_00806 overlap by 1 nucleotides CCNA_00803: CCNA_00803 - chemotaxis protein cheW, at 867,854 to 868,309 _00803 CCNA_00804: CCNA_00804 - ASC-1 homology domain protein, at 868,374 to 868,859 _00804 CCNA_00805: CCNA_00805 - GTP-binding protein YihA, at 869,089 to 869,778 _00805 CCNA_00806: CCNA_00806 - inner membrane protein translocase component yidC, at 869,778 to 871,625 _00806 Position (kb) 869 870Strain fitness (log2 ratio) -1 0 1 2at 868.100 kb on + strand, within CCNA_00803at 868.143 kb on - strand, within CCNA_00803at 868.163 kb on - strandat 868.176 kb on + strand, within CCNA_00803at 868.188 kb on + strand, within CCNA_00803at 868.226 kb on - strand, within CCNA_00803at 868.269 kb on + strandat 868.286 kb on + strandat 868.371 kb on + strandat 868.414 kb on - strandat 868.416 kb on + strandat 868.514 kb on - strand, within CCNA_00804at 868.566 kb on - strand, within CCNA_00804at 868.613 kb on - strand, within CCNA_00804at 868.639 kb on - strand, within CCNA_00804at 868.646 kb on - strand, within CCNA_00804at 868.653 kb on + strand, within CCNA_00804at 868.653 kb on + strand, within CCNA_00804at 868.667 kb on - strand, within CCNA_00804at 868.701 kb on - strand, within CCNA_00804at 868.708 kb on + strand, within CCNA_00804at 868.716 kb on - strand, within CCNA_00804at 868.716 kb on - strand, within CCNA_00804at 868.742 kb on + strand, within CCNA_00804at 868.742 kb on + strand, within CCNA_00804at 868.744 kb on + strand, within CCNA_00804at 868.750 kb on - strand, within CCNA_00804at 868.797 kb on + strand, within CCNA_00804at 868.797 kb on + strand, within CCNA_00804at 868.797 kb on + strand, within CCNA_00804at 868.805 kb on - strand, within CCNA_00804at 868.836 kb on + strandat 868.847 kb on - strandat 868.900 kb on + strandat 868.917 kb on - strandat 868.987 kb on + strandat 868.990 kb on - strandat 868.992 kb on + strandat 868.995 kb on + strandat 869.004 kb on - strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.017 kb on - strandat 869.017 kb on - strandat 869.017 kb on - strandat 869.017 kb on - strandat 869.107 kb on - strandat 869.696 kb on + strand, within CCNA_00805at 869.704 kb on - strand, within CCNA_00805at 869.758 kb on - strandat 869.830 kb on - strandat 869.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml
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868,100 + CCNA_00803 0.54 +0.3
868,143 - CCNA_00803 0.63 -0.4
868,163 - +0.6
868,176 + CCNA_00803 0.71 +1.1
868,188 + CCNA_00803 0.73 +0.3
868,226 - CCNA_00803 0.82 -0.8
868,269 + +0.7
868,286 + -0.4
868,371 + +0.8
868,414 - +0.6
868,416 + -0.8
868,514 - CCNA_00804 0.29 +0.8
868,566 - CCNA_00804 0.40 -1.6
868,613 - CCNA_00804 0.49 +0.9
868,639 - CCNA_00804 0.55 +2.6
868,646 - CCNA_00804 0.56 -0.1
868,653 + CCNA_00804 0.57 +1.3
868,653 + CCNA_00804 0.57 -0.3
868,667 - CCNA_00804 0.60 +0.3
868,701 - CCNA_00804 0.67 +0.1
868,708 + CCNA_00804 0.69 +0.4
868,716 - CCNA_00804 0.70 +0.4
868,716 - CCNA_00804 0.70 +0.5
868,742 + CCNA_00804 0.76 +0.1
868,742 + CCNA_00804 0.76 -0.4
868,744 + CCNA_00804 0.76 -0.0
868,750 - CCNA_00804 0.77 +0.1
868,797 + CCNA_00804 0.87 -0.4
868,797 + CCNA_00804 0.87 -0.5
868,797 + CCNA_00804 0.87 -0.0
868,805 - CCNA_00804 0.89 +0.9
868,836 + +1.3
868,847 - +0.2
868,900 + -0.3
868,917 - -0.5
868,987 + -0.7
868,990 - +0.1
868,992 + -1.5
868,995 + +0.0
869,004 - -0.3
869,009 + +0.6
869,009 + -0.6
869,009 + -0.1
869,009 + -0.3
869,009 + -0.0
869,009 + -1.0
869,009 + -0.7
869,017 - +1.7
869,017 - +0.7
869,017 - +1.5
869,017 - -0.2
869,107 - +0.8
869,696 + CCNA_00805 0.88 -1.5
869,704 - CCNA_00805 0.89 -1.5
869,758 - +0.3
869,830 - +0.1
869,847 - -0.1

Or see this region's nucleotide sequence