Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00191

Experiment: PYE with Thallium(I) acetate 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00188 and CCNA_00189 are separated by 143 nucleotidesCCNA_00189 and CCNA_00190 are separated by 1 nucleotidesCCNA_00190 and CCNA_00191 are separated by 125 nucleotidesCCNA_00191 and CCNA_00192 are separated by 0 nucleotides CCNA_00188: CCNA_00188 - ABC transporter ATP-binding protein, at 202,763 to 203,725 _00188 CCNA_00189: CCNA_00189 - zinc-finger domain protein, at 203,869 to 204,135 _00189 CCNA_00190: CCNA_00190 - acyl-CoA hydrolase, at 204,137 to 204,571 _00190 CCNA_00191: CCNA_00191 - N-acetylglutamate synthase domain protein, at 204,697 to 205,173 _00191 CCNA_00192: CCNA_00192 - long-chain-fatty-acid--CoA ligase, at 205,174 to 206,793 _00192 Position (kb) 204 205 206Strain fitness (log2 ratio) -2 -1 0 1 2at 203.697 kb on - strandat 203.719 kb on + strandat 203.727 kb on - strandat 203.731 kb on + strandat 203.731 kb on + strandat 203.731 kb on + strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.772 kb on + strandat 203.773 kb on - strandat 203.810 kb on + strandat 203.818 kb on - strandat 203.818 kb on - strandat 203.885 kb on + strandat 203.986 kb on + strand, within CCNA_00189at 204.008 kb on + strand, within CCNA_00189at 204.008 kb on + strand, within CCNA_00189at 204.008 kb on + strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.102 kb on - strand, within CCNA_00189at 204.134 kb on + strandat 204.142 kb on - strandat 204.435 kb on - strand, within CCNA_00190at 204.461 kb on + strand, within CCNA_00190at 204.506 kb on - strand, within CCNA_00190at 204.561 kb on - strandat 204.583 kb on - strandat 204.703 kb on + strandat 204.777 kb on + strand, within CCNA_00191at 204.777 kb on + strand, within CCNA_00191at 204.777 kb on + strand, within CCNA_00191at 204.777 kb on + strand, within CCNA_00191at 204.792 kb on + strand, within CCNA_00191at 204.836 kb on + strand, within CCNA_00191at 204.836 kb on + strand, within CCNA_00191at 204.842 kb on - strand, within CCNA_00191at 204.881 kb on - strand, within CCNA_00191at 204.891 kb on - strand, within CCNA_00191at 204.901 kb on + strand, within CCNA_00191at 204.906 kb on + strand, within CCNA_00191at 204.906 kb on + strand, within CCNA_00191at 204.914 kb on - strand, within CCNA_00191at 204.974 kb on + strand, within CCNA_00191at 204.985 kb on + strand, within CCNA_00191at 204.988 kb on - strand, within CCNA_00191at 205.009 kb on - strand, within CCNA_00191at 205.041 kb on + strand, within CCNA_00191at 205.048 kb on + strand, within CCNA_00191at 205.077 kb on + strand, within CCNA_00191at 205.102 kb on + strand, within CCNA_00191at 205.105 kb on + strand, within CCNA_00191at 205.115 kb on - strand, within CCNA_00191at 205.120 kb on - strand, within CCNA_00191at 205.154 kb on - strandat 205.168 kb on - strandat 205.172 kb on + strandat 205.193 kb on + strandat 205.193 kb on - strandat 205.212 kb on - strandat 205.230 kb on - strandat 205.306 kb on + strandat 205.306 kb on + strandat 205.357 kb on - strand, within CCNA_00192at 205.371 kb on + strand, within CCNA_00192at 205.384 kb on - strand, within CCNA_00192at 205.411 kb on + strand, within CCNA_00192at 205.419 kb on - strand, within CCNA_00192at 205.419 kb on - strand, within CCNA_00192at 205.448 kb on - strand, within CCNA_00192at 205.459 kb on + strand, within CCNA_00192at 205.459 kb on + strand, within CCNA_00192at 205.608 kb on + strand, within CCNA_00192at 205.608 kb on + strand, within CCNA_00192at 205.616 kb on - strand, within CCNA_00192at 205.616 kb on - strand, within CCNA_00192at 205.621 kb on + strand, within CCNA_00192at 205.626 kb on + strand, within CCNA_00192at 205.631 kb on - strand, within CCNA_00192at 205.639 kb on + strand, within CCNA_00192at 205.640 kb on - strand, within CCNA_00192at 205.682 kb on + strand, within CCNA_00192at 205.711 kb on + strand, within CCNA_00192at 205.711 kb on + strand, within CCNA_00192at 205.734 kb on + strand, within CCNA_00192at 205.736 kb on + strand, within CCNA_00192at 205.736 kb on + strand, within CCNA_00192at 205.736 kb on + strand, within CCNA_00192at 205.744 kb on - strand, within CCNA_00192at 205.744 kb on - strand, within CCNA_00192at 205.750 kb on + strand, within CCNA_00192at 205.778 kb on - strand, within CCNA_00192at 205.801 kb on + strand, within CCNA_00192at 205.814 kb on + strandat 205.814 kb on + strand, within CCNA_00192at 205.819 kb on + strandat 205.822 kb on - strand, within CCNA_00192at 205.822 kb on - strand, within CCNA_00192at 205.828 kb on + strand, within CCNA_00192at 205.838 kb on + strand, within CCNA_00192at 205.846 kb on - strand, within CCNA_00192at 205.873 kb on + strand, within CCNA_00192at 205.873 kb on + strand, within CCNA_00192at 205.881 kb on - strand, within CCNA_00192at 205.881 kb on - strand, within CCNA_00192at 205.881 kb on - strand, within CCNA_00192at 205.881 kb on - strand, within CCNA_00192at 205.881 kb on - strand, within CCNA_00192at 205.932 kb on + strand, within CCNA_00192at 205.955 kb on + strand, within CCNA_00192at 205.963 kb on - strand, within CCNA_00192at 205.978 kb on + strand, within CCNA_00192at 205.984 kb on + strand, within CCNA_00192at 205.993 kb on - strand, within CCNA_00192at 206.011 kb on + strand, within CCNA_00192at 206.024 kb on - strand, within CCNA_00192at 206.024 kb on - strand, within CCNA_00192at 206.074 kb on + strand, within CCNA_00192at 206.077 kb on + strand, within CCNA_00192at 206.086 kb on + strand, within CCNA_00192at 206.109 kb on + strand, within CCNA_00192at 206.109 kb on + strand, within CCNA_00192at 206.114 kb on + strand, within CCNA_00192at 206.117 kb on - strand, within CCNA_00192at 206.117 kb on - strand, within CCNA_00192at 206.117 kb on - strand, within CCNA_00192at 206.117 kb on - strand, within CCNA_00192at 206.117 kb on - strand, within CCNA_00192at 206.117 kb on - strand, within CCNA_00192at 206.117 kb on - strand, within CCNA_00192at 206.119 kb on + strand, within CCNA_00192at 206.119 kb on + strand, within CCNA_00192at 206.127 kb on - strand, within CCNA_00192at 206.147 kb on - strand, within CCNA_00192at 206.158 kb on + strand, within CCNA_00192at 206.158 kb on + strand, within CCNA_00192at 206.158 kb on + strand, within CCNA_00192at 206.158 kb on + strand, within CCNA_00192at 206.165 kb on + strand, within CCNA_00192at 206.166 kb on - strand, within CCNA_00192at 206.166 kb on - strand, within CCNA_00192

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml
remove
203,697 - -0.3
203,719 + -0.8
203,727 - +0.1
203,731 + -0.9
203,731 + -1.1
203,731 + -0.8
203,739 - +0.2
203,739 - -0.1
203,739 - +1.0
203,739 - -0.6
203,739 - -1.3
203,739 - -0.7
203,739 - -0.7
203,739 - -0.4
203,772 + +0.1
203,773 - -2.0
203,810 + +0.7
203,818 - -1.0
203,818 - -0.8
203,885 + -0.1
203,986 + CCNA_00189 0.44 +1.0
204,008 + CCNA_00189 0.52 +0.2
204,008 + CCNA_00189 0.52 +1.3
204,008 + CCNA_00189 0.52 +0.6
204,016 - CCNA_00189 0.55 -0.8
204,102 - CCNA_00189 0.87 +0.1
204,134 + -0.5
204,142 - -0.8
204,435 - CCNA_00190 0.69 +2.1
204,461 + CCNA_00190 0.74 +1.6
204,506 - CCNA_00190 0.85 +0.4
204,561 - +0.3
204,583 - +0.0
204,703 + -0.4
204,777 + CCNA_00191 0.17 -0.5
204,777 + CCNA_00191 0.17 -0.6
204,777 + CCNA_00191 0.17 +0.4
204,777 + CCNA_00191 0.17 -0.8
204,792 + CCNA_00191 0.20 -0.5
204,836 + CCNA_00191 0.29 -2.7
204,836 + CCNA_00191 0.29 +1.7
204,842 - CCNA_00191 0.30 -1.6
204,881 - CCNA_00191 0.39 +0.4
204,891 - CCNA_00191 0.41 -0.1
204,901 + CCNA_00191 0.43 -0.1
204,906 + CCNA_00191 0.44 -1.9
204,906 + CCNA_00191 0.44 -2.6
204,914 - CCNA_00191 0.45 +1.9
204,974 + CCNA_00191 0.58 +2.3
204,985 + CCNA_00191 0.60 -1.1
204,988 - CCNA_00191 0.61 -1.2
205,009 - CCNA_00191 0.65 -1.4
205,041 + CCNA_00191 0.72 -1.1
205,048 + CCNA_00191 0.74 -0.8
205,077 + CCNA_00191 0.80 +0.5
205,102 + CCNA_00191 0.85 -0.5
205,105 + CCNA_00191 0.86 -1.1
205,115 - CCNA_00191 0.88 +2.2
205,120 - CCNA_00191 0.89 -1.5
205,154 - -0.3
205,168 - +0.5
205,172 + -0.0
205,193 + -0.1
205,193 - -0.7
205,212 - +0.4
205,230 - -2.0
205,306 + -1.6
205,306 + -0.2
205,357 - CCNA_00192 0.11 +0.5
205,371 + CCNA_00192 0.12 -0.8
205,384 - CCNA_00192 0.13 +0.0
205,411 + CCNA_00192 0.15 +1.0
205,419 - CCNA_00192 0.15 -0.7
205,419 - CCNA_00192 0.15 -1.1
205,448 - CCNA_00192 0.17 +0.2
205,459 + CCNA_00192 0.18 -0.1
205,459 + CCNA_00192 0.18 +0.1
205,608 + CCNA_00192 0.27 +0.7
205,608 + CCNA_00192 0.27 -0.9
205,616 - CCNA_00192 0.27 -1.5
205,616 - CCNA_00192 0.27 -1.2
205,621 + CCNA_00192 0.28 -0.0
205,626 + CCNA_00192 0.28 -0.8
205,631 - CCNA_00192 0.28 -0.1
205,639 + CCNA_00192 0.29 -1.3
205,640 - CCNA_00192 0.29 -0.9
205,682 + CCNA_00192 0.31 -1.0
205,711 + CCNA_00192 0.33 -1.6
205,711 + CCNA_00192 0.33 +0.4
205,734 + CCNA_00192 0.35 -1.5
205,736 + CCNA_00192 0.35 +0.4
205,736 + CCNA_00192 0.35 -0.1
205,736 + CCNA_00192 0.35 +0.4
205,744 - CCNA_00192 0.35 -2.1
205,744 - CCNA_00192 0.35 +1.3
205,750 + CCNA_00192 0.36 +0.3
205,778 - CCNA_00192 0.37 -0.4
205,801 + CCNA_00192 0.39 -2.2
205,814 + +1.9
205,814 + CCNA_00192 0.40 -1.7
205,819 + +1.0
205,822 - CCNA_00192 0.40 -0.3
205,822 - CCNA_00192 0.40 +0.6
205,828 + CCNA_00192 0.40 +1.9
205,838 + CCNA_00192 0.41 -0.4
205,846 - CCNA_00192 0.41 -0.4
205,873 + CCNA_00192 0.43 -1.8
205,873 + CCNA_00192 0.43 +0.3
205,881 - CCNA_00192 0.44 -1.8
205,881 - CCNA_00192 0.44 -0.4
205,881 - CCNA_00192 0.44 +0.5
205,881 - CCNA_00192 0.44 -1.1
205,881 - CCNA_00192 0.44 +0.2
205,932 + CCNA_00192 0.47 -0.1
205,955 + CCNA_00192 0.48 -1.5
205,963 - CCNA_00192 0.49 -0.7
205,978 + CCNA_00192 0.50 -0.2
205,984 + CCNA_00192 0.50 -2.2
205,993 - CCNA_00192 0.51 -0.7
206,011 + CCNA_00192 0.52 -0.4
206,024 - CCNA_00192 0.52 -0.3
206,024 - CCNA_00192 0.52 +1.5
206,074 + CCNA_00192 0.56 -0.4
206,077 + CCNA_00192 0.56 -0.8
206,086 + CCNA_00192 0.56 +0.1
206,109 + CCNA_00192 0.58 -0.0
206,109 + CCNA_00192 0.58 -0.7
206,114 + CCNA_00192 0.58 +0.2
206,117 - CCNA_00192 0.58 -0.0
206,117 - CCNA_00192 0.58 -1.8
206,117 - CCNA_00192 0.58 +0.0
206,117 - CCNA_00192 0.58 -1.2
206,117 - CCNA_00192 0.58 -0.5
206,117 - CCNA_00192 0.58 +0.9
206,117 - CCNA_00192 0.58 -0.1
206,119 + CCNA_00192 0.58 -0.6
206,119 + CCNA_00192 0.58 -0.8
206,127 - CCNA_00192 0.59 -0.1
206,147 - CCNA_00192 0.60 -1.5
206,158 + CCNA_00192 0.61 +1.9
206,158 + CCNA_00192 0.61 -0.8
206,158 + CCNA_00192 0.61 -0.1
206,158 + CCNA_00192 0.61 -0.2
206,165 + CCNA_00192 0.61 -0.3
206,166 - CCNA_00192 0.61 +1.4
206,166 - CCNA_00192 0.61 +0.1

Or see this region's nucleotide sequence