Experiment: PYE with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00079 and CCNA_00080 are separated by 193 nucleotides CCNA_00080 and CCNA_00081 are separated by 34 nucleotides CCNA_00081 and CCNA_00082 are separated by 249 nucleotides
CCNA_00079: CCNA_00079 - MerR-family transcriptional regulator, at 83,414 to 83,893
_00079
CCNA_00080: CCNA_00080 - LexA-related transcriptional repressor, at 84,087 to 84,728
_00080
CCNA_00081: CCNA_00081 - hypothetical protein, at 84,763 to 84,972
_00081
CCNA_00082: CCNA_00082 - class 1 lysyl-tRNA synthetase, at 85,222 to 86,880
_00082
Position (kb) 84
85 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 83.770 kb on - strand, within CCNA_00079 at 83.770 kb on - strand, within CCNA_00079 at 83.783 kb on + strand, within CCNA_00079 at 83.791 kb on - strand, within CCNA_00079 at 83.805 kb on + strand, within CCNA_00079 at 83.837 kb on - strand, within CCNA_00079 at 83.882 kb on - strand at 83.903 kb on + strand at 83.949 kb on - strand at 83.960 kb on + strand at 83.968 kb on - strand at 83.968 kb on - strand at 84.015 kb on - strand at 84.022 kb on - strand at 84.046 kb on + strand at 84.046 kb on + strand at 84.549 kb on - strand, within CCNA_00080 at 84.551 kb on + strand, within CCNA_00080 at 84.594 kb on + strand, within CCNA_00080 at 84.645 kb on + strand, within CCNA_00080 at 84.645 kb on + strand, within CCNA_00080 at 84.653 kb on - strand, within CCNA_00080 at 84.745 kb on + strand at 84.753 kb on - strand at 84.758 kb on - strand at 84.759 kb on + strand at 84.761 kb on + strand at 84.761 kb on + strand at 84.769 kb on - strand at 84.769 kb on - strand at 84.769 kb on - strand at 84.830 kb on + strand, within CCNA_00081 at 84.830 kb on + strand, within CCNA_00081 at 84.838 kb on - strand, within CCNA_00081 at 84.838 kb on - strand, within CCNA_00081 at 84.840 kb on + strand, within CCNA_00081 at 84.843 kb on - strand, within CCNA_00081 at 84.863 kb on + strand, within CCNA_00081 at 84.873 kb on + strand, within CCNA_00081 at 84.878 kb on + strand, within CCNA_00081 at 84.878 kb on + strand, within CCNA_00081 at 84.878 kb on + strand, within CCNA_00081 at 84.878 kb on + strand, within CCNA_00081 at 84.884 kb on + strand, within CCNA_00081 at 84.886 kb on - strand, within CCNA_00081 at 84.886 kb on - strand, within CCNA_00081 at 84.901 kb on + strand, within CCNA_00081 at 84.909 kb on - strand, within CCNA_00081 at 84.951 kb on + strand, within CCNA_00081 at 84.951 kb on + strand, within CCNA_00081 at 84.957 kb on + strand at 84.974 kb on + strand at 84.990 kb on - strand at 84.996 kb on - strand at 85.008 kb on - strand at 85.015 kb on + strand at 85.017 kb on - strand at 85.017 kb on - strand at 85.022 kb on - strand at 85.024 kb on + strand at 85.040 kb on + strand at 85.048 kb on - strand at 85.070 kb on - strand at 85.083 kb on + strand at 85.091 kb on - strand at 85.125 kb on + strand at 85.127 kb on + strand at 85.133 kb on - strand at 85.133 kb on - strand at 85.133 kb on - strand at 85.133 kb on - strand at 85.135 kb on - strand at 85.153 kb on - strand at 85.166 kb on + strand at 85.196 kb on - strand at 85.223 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml remove 83,770 - CCNA_00079 0.74 +0.6 83,770 - CCNA_00079 0.74 +0.2 83,783 + CCNA_00079 0.77 -0.5 83,791 - CCNA_00079 0.79 -0.6 83,805 + CCNA_00079 0.81 +0.7 83,837 - CCNA_00079 0.88 -0.3 83,882 - -0.8 83,903 + -1.0 83,949 - +1.1 83,960 + +3.9 83,968 - -0.4 83,968 - -2.5 84,015 - -0.8 84,022 - -1.6 84,046 + -1.2 84,046 + +0.1 84,549 - CCNA_00080 0.72 +0.9 84,551 + CCNA_00080 0.72 +0.9 84,594 + CCNA_00080 0.79 +1.5 84,645 + CCNA_00080 0.87 +0.7 84,645 + CCNA_00080 0.87 +3.9 84,653 - CCNA_00080 0.88 +0.3 84,745 + +0.9 84,753 - +0.6 84,758 - +0.3 84,759 + +1.5 84,761 + +0.9 84,761 + -1.1 84,769 - +1.9 84,769 - -0.1 84,769 - -0.4 84,830 + CCNA_00081 0.32 -1.1 84,830 + CCNA_00081 0.32 -1.3 84,838 - CCNA_00081 0.36 +1.9 84,838 - CCNA_00081 0.36 -0.3 84,840 + CCNA_00081 0.37 -0.0 84,843 - CCNA_00081 0.38 +0.1 84,863 + CCNA_00081 0.48 -1.4 84,873 + CCNA_00081 0.52 -1.4 84,878 + CCNA_00081 0.55 +0.5 84,878 + CCNA_00081 0.55 -0.1 84,878 + CCNA_00081 0.55 +0.3 84,878 + CCNA_00081 0.55 -1.3 84,884 + CCNA_00081 0.58 -0.6 84,886 - CCNA_00081 0.59 -1.6 84,886 - CCNA_00081 0.59 -1.2 84,901 + CCNA_00081 0.66 -0.2 84,909 - CCNA_00081 0.70 -0.5 84,951 + CCNA_00081 0.90 -1.0 84,951 + CCNA_00081 0.90 +0.1 84,957 + -1.1 84,974 + -0.8 84,990 - +0.8 84,996 - -0.8 85,008 - +0.8 85,015 + -3.0 85,017 - +0.3 85,017 - -0.7 85,022 - +0.2 85,024 + -0.0 85,040 + -1.4 85,048 - +0.1 85,070 - -0.7 85,083 + -0.3 85,091 - +0.1 85,125 + +1.1 85,127 + -0.5 85,133 - +0.2 85,133 - -1.1 85,133 - -0.8 85,133 - -0.7 85,135 - +0.7 85,153 - +0.2 85,166 + +0.7 85,196 - +1.1 85,223 - -0.0
Or see this region's nucleotide sequence