Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_183 and Ac3H11_184 are separated by 135 nucleotides Ac3H11_184 and Ac3H11_185 are separated by 105 nucleotides Ac3H11_185 and Ac3H11_186 overlap by 12 nucleotides
Ac3H11_183 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 71,091 to 74,063
_183
Ac3H11_184 - hypothetical protein, at 74,199 to 74,573
_184
Ac3H11_185 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 74,679 to 76,364
_185
Ac3H11_186 - hypothetical protein, at 76,353 to 76,529
_186
Position (kb) 74
75
76
77 Strain fitness (log2 ratio) -2
-1
0
1
2 at 73.679 kb on - strand, within Ac3H11_183 at 73.679 kb on - strand, within Ac3H11_183 at 73.723 kb on + strand, within Ac3H11_183 at 73.723 kb on + strand, within Ac3H11_183 at 73.724 kb on - strand, within Ac3H11_183 at 73.927 kb on + strand at 73.927 kb on + strand at 73.927 kb on + strand at 73.927 kb on + strand at 73.927 kb on + strand at 73.928 kb on - strand at 73.928 kb on - strand at 73.983 kb on + strand at 74.047 kb on + strand at 74.048 kb on - strand at 74.048 kb on - strand at 74.101 kb on + strand at 74.155 kb on + strand at 74.155 kb on + strand at 74.155 kb on + strand at 74.155 kb on + strand at 74.156 kb on - strand at 74.156 kb on - strand at 74.156 kb on - strand at 74.156 kb on - strand at 74.156 kb on - strand at 74.156 kb on - strand at 74.156 kb on - strand at 74.156 kb on - strand at 74.156 kb on - strand at 74.434 kb on + strand, within Ac3H11_184 at 74.434 kb on + strand, within Ac3H11_184 at 74.776 kb on + strand at 74.776 kb on + strand at 74.776 kb on + strand at 74.776 kb on + strand at 74.777 kb on - strand at 74.777 kb on - strand at 74.777 kb on - strand at 74.777 kb on - strand at 74.777 kb on - strand at 74.777 kb on - strand at 74.777 kb on - strand at 74.777 kb on - strand at 74.777 kb on - strand at 75.013 kb on + strand, within Ac3H11_185 at 75.013 kb on + strand, within Ac3H11_185 at 75.113 kb on - strand, within Ac3H11_185 at 75.296 kb on - strand, within Ac3H11_185 at 75.307 kb on + strand, within Ac3H11_185 at 75.308 kb on - strand, within Ac3H11_185 at 75.319 kb on + strand, within Ac3H11_185 at 75.320 kb on - strand, within Ac3H11_185 at 75.379 kb on + strand, within Ac3H11_185 at 75.400 kb on + strand, within Ac3H11_185 at 75.400 kb on + strand, within Ac3H11_185 at 75.400 kb on + strand, within Ac3H11_185 at 75.400 kb on + strand, within Ac3H11_185 at 75.400 kb on + strand, within Ac3H11_185 at 75.400 kb on + strand, within Ac3H11_185 at 75.400 kb on + strand, within Ac3H11_185 at 75.400 kb on + strand, within Ac3H11_185 at 75.400 kb on + strand, within Ac3H11_185 at 75.400 kb on + strand, within Ac3H11_185 at 75.401 kb on - strand, within Ac3H11_185 at 75.401 kb on - strand, within Ac3H11_185 at 75.401 kb on - strand, within Ac3H11_185 at 75.401 kb on - strand, within Ac3H11_185 at 75.401 kb on - strand, within Ac3H11_185 at 75.401 kb on - strand, within Ac3H11_185 at 75.401 kb on - strand, within Ac3H11_185 at 75.401 kb on - strand, within Ac3H11_185 at 75.401 kb on - strand, within Ac3H11_185 at 75.401 kb on - strand, within Ac3H11_185 at 75.401 kb on - strand, within Ac3H11_185 at 75.541 kb on + strand, within Ac3H11_185 at 75.541 kb on + strand, within Ac3H11_185 at 75.541 kb on + strand, within Ac3H11_185 at 75.542 kb on - strand, within Ac3H11_185 at 75.542 kb on - strand, within Ac3H11_185 at 75.542 kb on - strand, within Ac3H11_185 at 75.542 kb on - strand, within Ac3H11_185 at 75.659 kb on + strand, within Ac3H11_185 at 75.715 kb on + strand, within Ac3H11_185 at 75.715 kb on + strand, within Ac3H11_185 at 75.715 kb on + strand, within Ac3H11_185 at 75.715 kb on + strand, within Ac3H11_185 at 75.715 kb on + strand, within Ac3H11_185 at 75.716 kb on - strand, within Ac3H11_185 at 75.716 kb on - strand, within Ac3H11_185 at 76.027 kb on + strand, within Ac3H11_185 at 76.027 kb on + strand, within Ac3H11_185 at 76.027 kb on + strand, within Ac3H11_185 at 76.027 kb on + strand, within Ac3H11_185 at 76.027 kb on + strand, within Ac3H11_185 at 76.028 kb on - strand, within Ac3H11_185 at 76.028 kb on - strand, within Ac3H11_185 at 76.028 kb on - strand, within Ac3H11_185 at 76.082 kb on + strand, within Ac3H11_185 at 76.082 kb on + strand, within Ac3H11_185 at 76.083 kb on - strand, within Ac3H11_185 at 76.083 kb on - strand, within Ac3H11_185 at 76.219 kb on + strand at 76.219 kb on + strand at 76.219 kb on + strand at 76.219 kb on + strand at 76.220 kb on - strand at 76.220 kb on - strand at 76.220 kb on - strand at 76.220 kb on - strand at 76.364 kb on + strand at 76.365 kb on - strand at 76.365 kb on - strand at 76.397 kb on - strand, within Ac3H11_186 at 76.510 kb on + strand, within Ac3H11_186 at 76.510 kb on + strand, within Ac3H11_186 at 76.510 kb on + strand, within Ac3H11_186 at 76.510 kb on + strand, within Ac3H11_186 at 76.511 kb on - strand, within Ac3H11_186 at 76.511 kb on - strand, within Ac3H11_186 at 76.511 kb on - strand, within Ac3H11_186 at 76.512 kb on - strand at 76.635 kb on + strand at 76.635 kb on + strand at 76.635 kb on + strand at 76.635 kb on + strand at 76.636 kb on - strand at 76.636 kb on - strand at 76.638 kb on + strand at 76.639 kb on - strand at 76.744 kb on + strand at 76.744 kb on + strand at 76.745 kb on - strand at 76.745 kb on - strand at 76.824 kb on - strand at 76.884 kb on + strand at 76.885 kb on - strand at 76.980 kb on - strand at 77.013 kb on + strand at 77.013 kb on + strand at 77.072 kb on - strand at 77.072 kb on - strand at 77.079 kb on + strand at 77.079 kb on + strand at 77.080 kb on - strand at 77.114 kb on + strand at 77.114 kb on + strand at 77.115 kb on - strand at 77.115 kb on - strand at 77.115 kb on - strand at 77.182 kb on + strand at 77.182 kb on + strand at 77.182 kb on + strand at 77.182 kb on + strand at 77.182 kb on + strand at 77.182 kb on + strand at 77.182 kb on + strand at 77.182 kb on + strand at 77.183 kb on - strand at 77.183 kb on - strand at 77.183 kb on - strand at 77.183 kb on - strand at 77.183 kb on - strand at 77.183 kb on - strand at 77.184 kb on + strand at 77.184 kb on + strand at 77.184 kb on + strand at 77.184 kb on + strand at 77.184 kb on + strand at 77.184 kb on + strand at 77.184 kb on + strand at 77.184 kb on + strand at 77.185 kb on - strand at 77.185 kb on - strand at 77.185 kb on - strand at 77.190 kb on + strand at 77.190 kb on + strand at 77.279 kb on + strand at 77.279 kb on + strand at 77.279 kb on + strand at 77.279 kb on + strand at 77.279 kb on + strand at 77.279 kb on + strand at 77.279 kb on + strand at 77.279 kb on + strand at 77.279 kb on + strand at 77.279 kb on + strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.280 kb on - strand at 77.313 kb on + strand at 77.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 73,679 - Ac3H11_183 0.87 -0.5 73,679 - Ac3H11_183 0.87 +0.8 73,723 + Ac3H11_183 0.89 -0.9 73,723 + Ac3H11_183 0.89 -0.9 73,724 - Ac3H11_183 0.89 +1.1 73,927 + +2.2 73,927 + -0.3 73,927 + -0.1 73,927 + +0.6 73,927 + -0.3 73,928 - -0.3 73,928 - -0.7 73,983 + +0.8 74,047 + +0.1 74,048 - -0.9 74,048 - -2.1 74,101 + -0.2 74,155 + +0.2 74,155 + -0.0 74,155 + +0.7 74,155 + -0.2 74,156 - -1.0 74,156 - +0.7 74,156 - +0.1 74,156 - -0.2 74,156 - -1.2 74,156 - +1.1 74,156 - -0.4 74,156 - -0.7 74,156 - +1.9 74,434 + Ac3H11_184 0.63 -1.5 74,434 + Ac3H11_184 0.63 -0.1 74,776 + -0.8 74,776 + +0.5 74,776 + -0.2 74,776 + -0.6 74,777 - -0.5 74,777 - +0.0 74,777 - +0.5 74,777 - +0.8 74,777 - +0.6 74,777 - -0.6 74,777 - -0.9 74,777 - +0.3 74,777 - -0.8 75,013 + Ac3H11_185 0.20 -0.5 75,013 + Ac3H11_185 0.20 +0.2 75,113 - Ac3H11_185 0.26 +0.4 75,296 - Ac3H11_185 0.37 +2.2 75,307 + Ac3H11_185 0.37 +0.7 75,308 - Ac3H11_185 0.37 +0.5 75,319 + Ac3H11_185 0.38 -1.0 75,320 - Ac3H11_185 0.38 +1.5 75,379 + Ac3H11_185 0.42 +0.5 75,400 + Ac3H11_185 0.43 -0.2 75,400 + Ac3H11_185 0.43 +0.1 75,400 + Ac3H11_185 0.43 +0.3 75,400 + Ac3H11_185 0.43 -0.0 75,400 + Ac3H11_185 0.43 -1.8 75,400 + Ac3H11_185 0.43 -0.5 75,400 + Ac3H11_185 0.43 +1.9 75,400 + Ac3H11_185 0.43 +0.2 75,400 + Ac3H11_185 0.43 -1.4 75,400 + Ac3H11_185 0.43 +0.7 75,401 - Ac3H11_185 0.43 -0.0 75,401 - Ac3H11_185 0.43 -0.4 75,401 - Ac3H11_185 0.43 -0.8 75,401 - Ac3H11_185 0.43 +0.5 75,401 - Ac3H11_185 0.43 -1.0 75,401 - Ac3H11_185 0.43 +0.3 75,401 - Ac3H11_185 0.43 +0.2 75,401 - Ac3H11_185 0.43 -0.2 75,401 - Ac3H11_185 0.43 -0.4 75,401 - Ac3H11_185 0.43 -1.5 75,401 - Ac3H11_185 0.43 +0.3 75,541 + Ac3H11_185 0.51 -1.4 75,541 + Ac3H11_185 0.51 +0.8 75,541 + Ac3H11_185 0.51 -0.4 75,542 - Ac3H11_185 0.51 -0.6 75,542 - Ac3H11_185 0.51 -1.3 75,542 - Ac3H11_185 0.51 -1.3 75,542 - Ac3H11_185 0.51 -0.3 75,659 + Ac3H11_185 0.58 -0.1 75,715 + Ac3H11_185 0.61 +0.9 75,715 + Ac3H11_185 0.61 -0.4 75,715 + Ac3H11_185 0.61 +0.1 75,715 + Ac3H11_185 0.61 +0.4 75,715 + Ac3H11_185 0.61 -0.1 75,716 - Ac3H11_185 0.62 +0.1 75,716 - Ac3H11_185 0.62 -0.0 76,027 + Ac3H11_185 0.80 +0.1 76,027 + Ac3H11_185 0.80 -0.6 76,027 + Ac3H11_185 0.80 -0.2 76,027 + Ac3H11_185 0.80 +0.3 76,027 + Ac3H11_185 0.80 +0.7 76,028 - Ac3H11_185 0.80 -0.3 76,028 - Ac3H11_185 0.80 +0.5 76,028 - Ac3H11_185 0.80 +0.1 76,082 + Ac3H11_185 0.83 -0.3 76,082 + Ac3H11_185 0.83 +1.3 76,083 - Ac3H11_185 0.83 +0.2 76,083 - Ac3H11_185 0.83 -0.2 76,219 + +0.6 76,219 + +0.6 76,219 + -0.9 76,219 + +0.5 76,220 - -0.2 76,220 - +0.7 76,220 - +0.4 76,220 - -0.2 76,364 + -0.4 76,365 - -0.3 76,365 - -0.3 76,397 - Ac3H11_186 0.25 -0.3 76,510 + Ac3H11_186 0.89 -1.0 76,510 + Ac3H11_186 0.89 -0.4 76,510 + Ac3H11_186 0.89 -0.5 76,510 + Ac3H11_186 0.89 -0.3 76,511 - Ac3H11_186 0.89 -0.5 76,511 - Ac3H11_186 0.89 -0.1 76,511 - Ac3H11_186 0.89 -0.2 76,512 - +0.1 76,635 + -0.0 76,635 + +0.7 76,635 + -1.4 76,635 + +0.3 76,636 - +0.7 76,636 - +0.2 76,638 + +0.1 76,639 - -0.0 76,744 + +0.4 76,744 + -1.8 76,745 - -0.1 76,745 - -0.1 76,824 - +0.5 76,884 + -0.5 76,885 - +0.4 76,980 - +0.8 77,013 + -0.4 77,013 + -0.2 77,072 - +1.0 77,072 - +0.1 77,079 + -0.5 77,079 + +0.4 77,080 - -0.4 77,114 + +0.5 77,114 + +0.6 77,115 - +0.7 77,115 - +1.2 77,115 - +1.1 77,182 + +0.1 77,182 + +0.0 77,182 + +1.0 77,182 + +0.3 77,182 + +1.6 77,182 + -1.3 77,182 + -1.4 77,182 + -0.1 77,183 - -0.6 77,183 - -0.6 77,183 - -1.4 77,183 - -0.2 77,183 - -0.6 77,183 - -0.0 77,184 + -0.5 77,184 + -0.6 77,184 + -0.3 77,184 + -0.1 77,184 + -0.3 77,184 + +0.5 77,184 + +0.0 77,184 + -0.4 77,185 - -0.3 77,185 - -2.6 77,185 - -0.0 77,190 + +0.6 77,190 + -0.5 77,279 + +0.2 77,279 + +2.3 77,279 + +0.4 77,279 + -0.5 77,279 + +0.9 77,279 + +0.3 77,279 + -1.0 77,279 + -1.9 77,279 + -1.7 77,279 + -0.6 77,280 - +0.2 77,280 - +0.5 77,280 - +0.2 77,280 - -0.1 77,280 - -0.5 77,280 - +0.9 77,280 - +0.2 77,280 - -0.7 77,280 - -0.1 77,280 - +0.2 77,280 - +1.9 77,280 - +0.2 77,280 - +0.9 77,280 - +0.2 77,280 - +0.4 77,280 - +0.1 77,280 - -0.3 77,280 - +0.5 77,313 + +1.0 77,314 - +0.3
Or see this region's nucleotide sequence