Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1824

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1822 and Ac3H11_1823 are separated by 12 nucleotidesAc3H11_1823 and Ac3H11_1824 are separated by 23 nucleotidesAc3H11_1824 and Ac3H11_1825 overlap by 10 nucleotidesAc3H11_1825 and Ac3H11_1826 are separated by 3 nucleotides Ac3H11_1822 - Thioredoxin, at 25,839 to 26,306 _1822 Ac3H11_1823 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 26,319 to 26,792 _1823 Ac3H11_1824 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 26,816 to 27,577 _1824 Ac3H11_1825 - Uncharacterized protein conserved in bacteria, NMA0228-like, at 27,568 to 28,428 _1825 Ac3H11_1826 - Putative signal peptide protein, at 28,432 to 28,725 _1826 Position (kb) 26 27 28Strain fitness (log2 ratio) -1 0 1 2at 25.980 kb on - strand, within Ac3H11_1822at 26.187 kb on + strand, within Ac3H11_1822at 26.187 kb on + strand, within Ac3H11_1822at 26.187 kb on + strand, within Ac3H11_1822at 26.187 kb on + strand, within Ac3H11_1822at 26.187 kb on + strand, within Ac3H11_1822at 26.304 kb on + strandat 26.305 kb on - strandat 26.377 kb on + strand, within Ac3H11_1823at 26.377 kb on + strand, within Ac3H11_1823at 26.377 kb on + strand, within Ac3H11_1823at 26.378 kb on - strand, within Ac3H11_1823at 26.378 kb on - strand, within Ac3H11_1823at 26.378 kb on - strand, within Ac3H11_1823at 26.425 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.576 kb on - strand, within Ac3H11_1823at 26.596 kb on + strand, within Ac3H11_1823at 26.596 kb on + strand, within Ac3H11_1823at 26.596 kb on + strand, within Ac3H11_1823at 26.597 kb on - strand, within Ac3H11_1823at 27.267 kb on + strand, within Ac3H11_1824at 27.267 kb on + strand, within Ac3H11_1824at 27.267 kb on + strand, within Ac3H11_1824at 27.268 kb on - strand, within Ac3H11_1824at 27.268 kb on - strand, within Ac3H11_1824at 27.324 kb on + strand, within Ac3H11_1824at 27.324 kb on + strand, within Ac3H11_1824at 27.324 kb on + strand, within Ac3H11_1824at 27.324 kb on + strand, within Ac3H11_1824at 27.325 kb on - strand, within Ac3H11_1824at 27.325 kb on - strand, within Ac3H11_1824at 27.325 kb on - strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.367 kb on - strand, within Ac3H11_1824at 27.367 kb on - strand, within Ac3H11_1824at 27.367 kb on - strand, within Ac3H11_1824at 27.423 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.464 kb on - strand, within Ac3H11_1824at 27.464 kb on - strand, within Ac3H11_1824at 27.471 kb on + strand, within Ac3H11_1824at 27.471 kb on + strand, within Ac3H11_1824at 27.694 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.790 kb on + strand, within Ac3H11_1825at 27.790 kb on + strand, within Ac3H11_1825at 27.790 kb on + strand, within Ac3H11_1825at 27.790 kb on + strand, within Ac3H11_1825at 27.791 kb on - strand, within Ac3H11_1825at 27.791 kb on - strand, within Ac3H11_1825at 27.791 kb on - strand, within Ac3H11_1825at 27.857 kb on + strand, within Ac3H11_1825at 27.857 kb on + strand, within Ac3H11_1825at 27.858 kb on - strand, within Ac3H11_1825at 27.995 kb on + strand, within Ac3H11_1825at 27.996 kb on - strand, within Ac3H11_1825at 27.996 kb on - strand, within Ac3H11_1825at 27.996 kb on - strand, within Ac3H11_1825at 27.996 kb on - strand, within Ac3H11_1825at 27.996 kb on - strand, within Ac3H11_1825at 27.996 kb on - strand, within Ac3H11_1825at 28.319 kb on + strand, within Ac3H11_1825at 28.319 kb on + strand, within Ac3H11_1825at 28.319 kb on + strand, within Ac3H11_1825at 28.319 kb on + strand, within Ac3H11_1825at 28.320 kb on - strand, within Ac3H11_1825at 28.320 kb on - strand, within Ac3H11_1825at 28.320 kb on - strand, within Ac3H11_1825at 28.379 kb on + strandat 28.526 kb on + strand, within Ac3H11_1826at 28.527 kb on - strand, within Ac3H11_1826at 28.527 kb on - strand, within Ac3H11_1826

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
25,980 - Ac3H11_1822 0.30 +1.8
26,187 + Ac3H11_1822 0.74 -0.2
26,187 + Ac3H11_1822 0.74 +0.3
26,187 + Ac3H11_1822 0.74 -0.2
26,187 + Ac3H11_1822 0.74 +0.6
26,187 + Ac3H11_1822 0.74 +0.1
26,304 + +0.7
26,305 - +0.2
26,377 + Ac3H11_1823 0.12 +0.2
26,377 + Ac3H11_1823 0.12 +0.5
26,377 + Ac3H11_1823 0.12 -0.9
26,378 - Ac3H11_1823 0.12 +0.0
26,378 - Ac3H11_1823 0.12 +0.5
26,378 - Ac3H11_1823 0.12 -0.0
26,425 + Ac3H11_1823 0.22 -0.9
26,575 + Ac3H11_1823 0.54 +0.1
26,575 + Ac3H11_1823 0.54 +0.4
26,575 + Ac3H11_1823 0.54 +0.7
26,575 + Ac3H11_1823 0.54 -0.8
26,575 + Ac3H11_1823 0.54 -0.8
26,576 - Ac3H11_1823 0.54 +0.3
26,596 + Ac3H11_1823 0.58 +0.1
26,596 + Ac3H11_1823 0.58 -0.7
26,596 + Ac3H11_1823 0.58 -1.2
26,597 - Ac3H11_1823 0.59 +0.5
27,267 + Ac3H11_1824 0.59 -0.7
27,267 + Ac3H11_1824 0.59 +0.4
27,267 + Ac3H11_1824 0.59 -0.4
27,268 - Ac3H11_1824 0.59 +0.5
27,268 - Ac3H11_1824 0.59 +0.5
27,324 + Ac3H11_1824 0.67 -0.7
27,324 + Ac3H11_1824 0.67 -0.1
27,324 + Ac3H11_1824 0.67 -0.0
27,324 + Ac3H11_1824 0.67 -0.6
27,325 - Ac3H11_1824 0.67 -0.3
27,325 - Ac3H11_1824 0.67 -1.3
27,325 - Ac3H11_1824 0.67 -0.9
27,366 + Ac3H11_1824 0.72 +0.8
27,366 + Ac3H11_1824 0.72 +0.3
27,366 + Ac3H11_1824 0.72 -0.5
27,366 + Ac3H11_1824 0.72 -1.1
27,366 + Ac3H11_1824 0.72 +0.1
27,367 - Ac3H11_1824 0.72 -0.1
27,367 - Ac3H11_1824 0.72 +1.3
27,367 - Ac3H11_1824 0.72 -0.0
27,423 + Ac3H11_1824 0.80 -0.9
27,463 + Ac3H11_1824 0.85 -0.6
27,463 + Ac3H11_1824 0.85 -0.0
27,463 + Ac3H11_1824 0.85 +0.6
27,463 + Ac3H11_1824 0.85 +0.4
27,463 + Ac3H11_1824 0.85 -0.0
27,464 - Ac3H11_1824 0.85 -0.1
27,464 - Ac3H11_1824 0.85 -0.1
27,471 + Ac3H11_1824 0.86 -1.3
27,471 + Ac3H11_1824 0.86 +1.2
27,694 + Ac3H11_1825 0.15 -0.6
27,725 + Ac3H11_1825 0.18 -1.1
27,725 + Ac3H11_1825 0.18 -0.4
27,725 + Ac3H11_1825 0.18 -1.6
27,725 + Ac3H11_1825 0.18 -0.6
27,725 + Ac3H11_1825 0.18 -0.7
27,725 + Ac3H11_1825 0.18 -0.4
27,725 + Ac3H11_1825 0.18 +0.3
27,726 - Ac3H11_1825 0.18 -0.1
27,726 - Ac3H11_1825 0.18 -0.3
27,726 - Ac3H11_1825 0.18 -0.5
27,726 - Ac3H11_1825 0.18 -1.0
27,726 - Ac3H11_1825 0.18 +0.1
27,790 + Ac3H11_1825 0.26 +0.2
27,790 + Ac3H11_1825 0.26 -0.6
27,790 + Ac3H11_1825 0.26 -0.8
27,790 + Ac3H11_1825 0.26 -1.0
27,791 - Ac3H11_1825 0.26 +0.3
27,791 - Ac3H11_1825 0.26 +0.1
27,791 - Ac3H11_1825 0.26 -0.3
27,857 + Ac3H11_1825 0.34 -0.6
27,857 + Ac3H11_1825 0.34 +0.1
27,858 - Ac3H11_1825 0.34 -0.5
27,995 + Ac3H11_1825 0.50 -0.1
27,996 - Ac3H11_1825 0.50 -0.2
27,996 - Ac3H11_1825 0.50 -0.1
27,996 - Ac3H11_1825 0.50 -1.5
27,996 - Ac3H11_1825 0.50 +0.4
27,996 - Ac3H11_1825 0.50 +1.0
27,996 - Ac3H11_1825 0.50 -0.5
28,319 + Ac3H11_1825 0.87 -0.2
28,319 + Ac3H11_1825 0.87 +0.0
28,319 + Ac3H11_1825 0.87 +0.6
28,319 + Ac3H11_1825 0.87 +0.7
28,320 - Ac3H11_1825 0.87 +0.3
28,320 - Ac3H11_1825 0.87 +0.5
28,320 - Ac3H11_1825 0.87 -0.4
28,379 + -0.3
28,526 + Ac3H11_1826 0.32 -0.8
28,527 - Ac3H11_1826 0.32 +0.9
28,527 - Ac3H11_1826 0.32 -1.1

Or see this region's nucleotide sequence