Experiment: A22 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26615 and AO353_26620 are separated by 38 nucleotides AO353_26620 and AO353_26625 are separated by 103 nucleotides
AO353_26615: AO353_26615 - pyridine nucleotide-disulfide oxidoreductase, at 5,828,080 to 5,829,324
_26615
AO353_26620: AO353_26620 - ArsR family transcriptional regulator, at 5,829,363 to 5,829,698
_26620
AO353_26625: AO353_26625 - MBL fold metallo-hydrolase, at 5,829,802 to 5,830,665
_26625
Position (kb)
5829
5830 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 5828.397 kb on + strand, within AO353_26615 at 5828.398 kb on - strand, within AO353_26615 at 5828.530 kb on + strand, within AO353_26615 at 5828.663 kb on + strand, within AO353_26615 at 5828.663 kb on + strand, within AO353_26615 at 5828.664 kb on - strand, within AO353_26615 at 5828.664 kb on - strand, within AO353_26615 at 5828.675 kb on + strand, within AO353_26615 at 5828.675 kb on + strand, within AO353_26615 at 5828.675 kb on + strand, within AO353_26615 at 5828.676 kb on - strand, within AO353_26615 at 5828.676 kb on - strand, within AO353_26615 at 5828.676 kb on - strand, within AO353_26615 at 5828.676 kb on - strand, within AO353_26615 at 5828.676 kb on - strand, within AO353_26615 at 5828.676 kb on - strand, within AO353_26615 at 5828.755 kb on + strand, within AO353_26615 at 5828.755 kb on + strand, within AO353_26615 at 5828.756 kb on - strand, within AO353_26615 at 5828.756 kb on - strand, within AO353_26615 at 5828.792 kb on + strand, within AO353_26615 at 5828.792 kb on + strand, within AO353_26615 at 5828.792 kb on + strand, within AO353_26615 at 5828.792 kb on + strand, within AO353_26615 at 5828.792 kb on + strand, within AO353_26615 at 5828.792 kb on + strand, within AO353_26615 at 5828.793 kb on - strand, within AO353_26615 at 5828.793 kb on - strand, within AO353_26615 at 5828.793 kb on - strand, within AO353_26615 at 5828.793 kb on - strand, within AO353_26615 at 5828.793 kb on - strand, within AO353_26615 at 5828.793 kb on - strand, within AO353_26615 at 5828.793 kb on - strand, within AO353_26615 at 5828.793 kb on - strand, within AO353_26615 at 5828.793 kb on - strand, within AO353_26615 at 5828.891 kb on + strand, within AO353_26615 at 5828.891 kb on + strand, within AO353_26615 at 5828.892 kb on - strand, within AO353_26615 at 5828.892 kb on - strand, within AO353_26615 at 5828.912 kb on + strand, within AO353_26615 at 5828.912 kb on + strand, within AO353_26615 at 5828.912 kb on + strand, within AO353_26615 at 5828.912 kb on + strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5829.121 kb on + strand, within AO353_26615 at 5829.122 kb on - strand, within AO353_26615 at 5829.122 kb on - strand, within AO353_26615 at 5829.176 kb on + strand, within AO353_26615 at 5829.176 kb on + strand, within AO353_26615 at 5829.177 kb on - strand, within AO353_26615 at 5829.179 kb on + strand, within AO353_26615 at 5829.179 kb on + strand, within AO353_26615 at 5829.179 kb on + strand, within AO353_26615 at 5829.179 kb on + strand, within AO353_26615 at 5829.179 kb on + strand, within AO353_26615 at 5829.180 kb on - strand, within AO353_26615 at 5829.180 kb on - strand, within AO353_26615 at 5829.180 kb on - strand, within AO353_26615 at 5829.180 kb on - strand, within AO353_26615 at 5829.275 kb on - strand at 5829.324 kb on + strand at 5829.324 kb on + strand at 5829.324 kb on + strand at 5829.324 kb on + strand at 5829.325 kb on - strand at 5829.325 kb on - strand at 5829.325 kb on - strand at 5829.325 kb on - strand at 5829.325 kb on - strand at 5829.325 kb on - strand at 5829.329 kb on + strand at 5829.329 kb on + strand at 5829.329 kb on + strand at 5829.330 kb on - strand at 5829.330 kb on - strand at 5829.338 kb on + strand at 5829.338 kb on + strand at 5829.339 kb on - strand at 5829.339 kb on - strand at 5829.379 kb on - strand at 5829.379 kb on - strand at 5829.394 kb on + strand at 5829.395 kb on - strand at 5829.395 kb on - strand at 5829.448 kb on + strand, within AO353_26620 at 5829.449 kb on - strand, within AO353_26620 at 5829.458 kb on - strand, within AO353_26620 at 5829.458 kb on - strand, within AO353_26620 at 5829.618 kb on + strand, within AO353_26620 at 5829.684 kb on + strand at 5829.706 kb on + strand at 5829.706 kb on + strand at 5829.706 kb on + strand at 5829.707 kb on - strand at 5829.707 kb on - strand at 5829.724 kb on - strand at 5829.737 kb on + strand at 5829.767 kb on + strand at 5829.767 kb on + strand at 5829.768 kb on - strand at 5829.768 kb on - strand at 5829.768 kb on - strand at 5829.768 kb on - strand at 5829.768 kb on - strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.910 kb on + strand, within AO353_26625 at 5830.042 kb on + strand, within AO353_26625 at 5830.255 kb on + strand, within AO353_26625 at 5830.255 kb on + strand, within AO353_26625 at 5830.256 kb on - strand, within AO353_26625 at 5830.356 kb on - strand, within AO353_26625 at 5830.356 kb on - strand, within AO353_26625 at 5830.356 kb on - strand, within AO353_26625 at 5830.356 kb on - strand, within AO353_26625 at 5830.356 kb on - strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.483 kb on - strand, within AO353_26625 at 5830.483 kb on - strand, within AO353_26625 at 5830.483 kb on - strand, within AO353_26625 at 5830.568 kb on + strand, within AO353_26625 at 5830.692 kb on + strand at 5830.692 kb on + strand at 5830.692 kb on + strand at 5830.692 kb on + strand at 5830.693 kb on - strand at 5830.693 kb on - strand at 5830.693 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.002 mg/ml remove 5,828,397 + AO353_26615 0.25 +0.1 5,828,398 - AO353_26615 0.26 -2.4 5,828,530 + AO353_26615 0.36 -0.2 5,828,663 + AO353_26615 0.47 +0.1 5,828,663 + AO353_26615 0.47 +0.3 5,828,664 - AO353_26615 0.47 +0.6 5,828,664 - AO353_26615 0.47 +0.3 5,828,675 + AO353_26615 0.48 -0.3 5,828,675 + AO353_26615 0.48 -0.1 5,828,675 + AO353_26615 0.48 +0.6 5,828,676 - AO353_26615 0.48 -2.5 5,828,676 - AO353_26615 0.48 +1.0 5,828,676 - AO353_26615 0.48 -0.7 5,828,676 - AO353_26615 0.48 -2.0 5,828,676 - AO353_26615 0.48 +0.1 5,828,676 - AO353_26615 0.48 +0.6 5,828,755 + AO353_26615 0.54 +1.6 5,828,755 + AO353_26615 0.54 +1.0 5,828,756 - AO353_26615 0.54 -0.3 5,828,756 - AO353_26615 0.54 -0.9 5,828,792 + AO353_26615 0.57 +0.4 5,828,792 + AO353_26615 0.57 -2.3 5,828,792 + AO353_26615 0.57 -0.3 5,828,792 + AO353_26615 0.57 +1.0 5,828,792 + AO353_26615 0.57 -2.0 5,828,792 + AO353_26615 0.57 -0.7 5,828,793 - AO353_26615 0.57 -1.1 5,828,793 - AO353_26615 0.57 -0.0 5,828,793 - AO353_26615 0.57 -0.0 5,828,793 - AO353_26615 0.57 +0.3 5,828,793 - AO353_26615 0.57 -3.7 5,828,793 - AO353_26615 0.57 -1.3 5,828,793 - AO353_26615 0.57 +0.5 5,828,793 - AO353_26615 0.57 +0.8 5,828,793 - AO353_26615 0.57 -0.4 5,828,891 + AO353_26615 0.65 +0.5 5,828,891 + AO353_26615 0.65 -0.0 5,828,892 - AO353_26615 0.65 +0.9 5,828,892 - AO353_26615 0.65 +0.6 5,828,912 + AO353_26615 0.67 +0.1 5,828,912 + AO353_26615 0.67 -0.5 5,828,912 + AO353_26615 0.67 -0.8 5,828,912 + AO353_26615 0.67 -0.6 5,828,913 - AO353_26615 0.67 -1.9 5,828,913 - AO353_26615 0.67 +1.3 5,828,913 - AO353_26615 0.67 -0.5 5,828,913 - AO353_26615 0.67 +0.7 5,828,913 - AO353_26615 0.67 +0.3 5,828,913 - AO353_26615 0.67 +0.7 5,828,913 - AO353_26615 0.67 -0.7 5,829,121 + AO353_26615 0.84 -0.6 5,829,122 - AO353_26615 0.84 +0.1 5,829,122 - AO353_26615 0.84 -0.7 5,829,176 + AO353_26615 0.88 -1.7 5,829,176 + AO353_26615 0.88 +0.2 5,829,177 - AO353_26615 0.88 +0.2 5,829,179 + AO353_26615 0.88 +0.3 5,829,179 + AO353_26615 0.88 -1.2 5,829,179 + AO353_26615 0.88 +0.3 5,829,179 + AO353_26615 0.88 +0.5 5,829,179 + AO353_26615 0.88 +0.6 5,829,180 - AO353_26615 0.88 -1.0 5,829,180 - AO353_26615 0.88 +0.5 5,829,180 - AO353_26615 0.88 +0.0 5,829,180 - AO353_26615 0.88 +1.0 5,829,275 - -1.9 5,829,324 + -2.0 5,829,324 + +0.7 5,829,324 + +0.1 5,829,324 + -0.5 5,829,325 - +0.1 5,829,325 - +0.3 5,829,325 - -0.5 5,829,325 - +0.3 5,829,325 - -0.5 5,829,325 - +0.5 5,829,329 + -0.5 5,829,329 + -0.3 5,829,329 + -1.3 5,829,330 - +0.3 5,829,330 - -1.5 5,829,338 + -0.7 5,829,338 + +1.3 5,829,339 - +1.7 5,829,339 - +0.1 5,829,379 - +0.3 5,829,379 - +1.1 5,829,394 + +0.5 5,829,395 - +1.3 5,829,395 - -1.9 5,829,448 + AO353_26620 0.25 -1.2 5,829,449 - AO353_26620 0.26 -0.8 5,829,458 - AO353_26620 0.28 -1.1 5,829,458 - AO353_26620 0.28 -1.3 5,829,618 + AO353_26620 0.76 +0.1 5,829,684 + -2.6 5,829,706 + +2.6 5,829,706 + -0.9 5,829,706 + -0.9 5,829,707 - -0.1 5,829,707 - +0.3 5,829,724 - -0.4 5,829,737 + -0.7 5,829,767 + -0.9 5,829,767 + +2.9 5,829,768 - -1.3 5,829,768 - -0.5 5,829,768 - +1.5 5,829,768 - +0.8 5,829,768 - -1.0 5,829,847 + -0.4 5,829,847 + +0.3 5,829,847 + -0.3 5,829,847 + +0.3 5,829,847 + +1.0 5,829,847 + -1.3 5,829,847 + +0.0 5,829,847 + -0.8 5,829,848 - +0.3 5,829,848 - +0.2 5,829,848 - +0.8 5,829,848 - -0.1 5,829,848 - -1.0 5,829,848 - +0.3 5,829,848 - +0.1 5,829,848 - -0.7 5,829,848 - -0.4 5,829,848 - +1.1 5,829,853 + +0.6 5,829,853 + +1.0 5,829,853 + -0.2 5,829,853 + -1.0 5,829,853 + -0.7 5,829,853 + +0.1 5,829,853 + +0.1 5,829,853 + -1.4 5,829,853 + +1.0 5,829,853 + +1.3 5,829,853 + -1.5 5,829,853 + +1.9 5,829,853 + -0.0 5,829,853 + -0.2 5,829,853 + +1.3 5,829,853 + -0.0 5,829,854 - +1.0 5,829,854 - +0.3 5,829,854 - -0.1 5,829,854 - +0.3 5,829,854 - +0.3 5,829,854 - -0.4 5,829,854 - -0.5 5,829,854 - +0.1 5,829,854 - +0.3 5,829,854 - +1.3 5,829,854 - -1.7 5,829,854 - -0.1 5,829,854 - +2.0 5,829,854 - -1.0 5,829,854 - +0.9 5,829,862 + -0.3 5,829,862 + -3.8 5,829,862 + +0.8 5,829,862 + -0.0 5,829,862 + -1.2 5,829,862 + -1.2 5,829,862 + +0.8 5,829,862 + -0.0 5,829,862 + -1.1 5,829,862 + -0.4 5,829,862 + +1.0 5,829,863 - -0.9 5,829,863 - -0.7 5,829,863 - -0.9 5,829,863 - -0.4 5,829,863 - -0.5 5,829,863 - +0.7 5,829,863 - -0.4 5,829,863 - -1.1 5,829,863 - -0.2 5,829,863 - -0.1 5,829,910 + AO353_26625 0.12 -0.0 5,830,042 + AO353_26625 0.28 +0.3 5,830,255 + AO353_26625 0.52 -0.5 5,830,255 + AO353_26625 0.52 +0.9 5,830,256 - AO353_26625 0.53 -0.4 5,830,356 - AO353_26625 0.64 +0.5 5,830,356 - AO353_26625 0.64 +0.3 5,830,356 - AO353_26625 0.64 -0.2 5,830,356 - AO353_26625 0.64 +0.0 5,830,356 - AO353_26625 0.64 -0.7 5,830,405 + AO353_26625 0.70 +0.5 5,830,405 + AO353_26625 0.70 +0.7 5,830,405 + AO353_26625 0.70 +1.3 5,830,405 + AO353_26625 0.70 +2.9 5,830,405 + AO353_26625 0.70 -0.4 5,830,405 + AO353_26625 0.70 -0.2 5,830,405 + AO353_26625 0.70 -1.7 5,830,483 - AO353_26625 0.79 +1.3 5,830,483 - AO353_26625 0.79 -0.2 5,830,483 - AO353_26625 0.79 +0.5 5,830,568 + AO353_26625 0.89 -2.1 5,830,692 + +0.5 5,830,692 + +0.7 5,830,692 + -1.9 5,830,692 + -1.2 5,830,693 - +1.3 5,830,693 - +0.7 5,830,693 - +1.0
Or see this region's nucleotide sequence