Experiment: A22 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24435 and AO353_24440 are separated by 102 nucleotides
AO353_24435: AO353_24435 - flavoprotein, at 5,371,345 to 5,372,847
_24435
AO353_24440: AO353_24440 - reactive intermediate/imine deaminase, at 5,372,950 to 5,373,327
_24440
Position (kb)
5372
5373
5374 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5372.049 kb on - strand, within AO353_24435 at 5372.114 kb on + strand, within AO353_24435 at 5372.154 kb on + strand, within AO353_24435 at 5372.158 kb on - strand, within AO353_24435 at 5372.233 kb on + strand, within AO353_24435 at 5372.234 kb on - strand, within AO353_24435 at 5372.245 kb on - strand, within AO353_24435 at 5372.254 kb on + strand, within AO353_24435 at 5372.255 kb on - strand, within AO353_24435 at 5372.281 kb on + strand, within AO353_24435 at 5372.300 kb on + strand, within AO353_24435 at 5372.352 kb on - strand, within AO353_24435 at 5372.417 kb on - strand, within AO353_24435 at 5372.484 kb on + strand, within AO353_24435 at 5372.485 kb on - strand, within AO353_24435 at 5372.509 kb on + strand, within AO353_24435 at 5372.635 kb on + strand, within AO353_24435 at 5372.636 kb on - strand, within AO353_24435 at 5372.851 kb on - strand at 5372.851 kb on - strand at 5372.897 kb on + strand at 5373.176 kb on + strand, within AO353_24440 at 5373.192 kb on - strand, within AO353_24440 at 5373.221 kb on - strand, within AO353_24440 at 5373.221 kb on - strand, within AO353_24440 at 5373.359 kb on - strand at 5373.359 kb on - strand at 5373.446 kb on - strand at 5373.512 kb on - strand at 5373.512 kb on - strand at 5373.521 kb on - strand at 5373.595 kb on + strand at 5373.601 kb on - strand at 5373.730 kb on - strand at 5373.767 kb on - strand at 5373.767 kb on - strand at 5373.767 kb on - strand at 5373.770 kb on + strand at 5373.816 kb on + strand at 5373.862 kb on + strand at 5374.011 kb on + strand at 5374.046 kb on + strand at 5374.060 kb on + strand at 5374.111 kb on + strand at 5374.117 kb on - strand at 5374.231 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.002 mg/ml remove 5,372,049 - AO353_24435 0.47 -0.5 5,372,114 + AO353_24435 0.51 -0.8 5,372,154 + AO353_24435 0.54 +1.2 5,372,158 - AO353_24435 0.54 -0.1 5,372,233 + AO353_24435 0.59 -0.5 5,372,234 - AO353_24435 0.59 +1.2 5,372,245 - AO353_24435 0.60 +1.6 5,372,254 + AO353_24435 0.60 -0.8 5,372,255 - AO353_24435 0.61 -1.1 5,372,281 + AO353_24435 0.62 +0.5 5,372,300 + AO353_24435 0.64 +0.4 5,372,352 - AO353_24435 0.67 -1.4 5,372,417 - AO353_24435 0.71 -1.9 5,372,484 + AO353_24435 0.76 +0.3 5,372,485 - AO353_24435 0.76 -1.8 5,372,509 + AO353_24435 0.77 +0.3 5,372,635 + AO353_24435 0.86 -0.3 5,372,636 - AO353_24435 0.86 -1.8 5,372,851 - +0.2 5,372,851 - -0.2 5,372,897 + -1.0 5,373,176 + AO353_24440 0.60 -0.6 5,373,192 - AO353_24440 0.64 -0.5 5,373,221 - AO353_24440 0.72 -1.4 5,373,221 - AO353_24440 0.72 -0.4 5,373,359 - -1.4 5,373,359 - +0.9 5,373,446 - +2.2 5,373,512 - +0.1 5,373,512 - +0.8 5,373,521 - +0.9 5,373,595 + +0.2 5,373,601 - +1.2 5,373,730 - +0.2 5,373,767 - +0.5 5,373,767 - -0.3 5,373,767 - +0.9 5,373,770 + -0.6 5,373,816 + -1.0 5,373,862 + -0.2 5,374,011 + -0.4 5,374,046 + -0.7 5,374,060 + +0.2 5,374,111 + -0.1 5,374,117 - +1.0 5,374,231 + +0.9
Or see this region's nucleotide sequence