Experiment: A22 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07905 and AO353_07910 are separated by 111 nucleotides AO353_07910 and AO353_07915 are separated by 328 nucleotides AO353_07915 and AO353_07920 are separated by 244 nucleotides
AO353_07905: AO353_07905 - hypothetical protein, at 1,744,416 to 1,744,955
_07905
AO353_07910: AO353_07910 - hypothetical protein, at 1,745,067 to 1,745,336
_07910
AO353_07915: AO353_07915 - hypothetical protein, at 1,745,665 to 1,746,039
_07915
AO353_07920: AO353_07920 - hypothetical protein, at 1,746,284 to 1,746,643
_07920
Position (kb)
1745
1746 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1744.189 kb on - strand at 1744.198 kb on + strand at 1744.409 kb on - strand at 1744.439 kb on - strand at 1744.527 kb on + strand, within AO353_07905 at 1744.530 kb on - strand, within AO353_07905 at 1744.547 kb on - strand, within AO353_07905 at 1744.695 kb on + strand, within AO353_07905 at 1744.695 kb on + strand, within AO353_07905 at 1744.737 kb on + strand, within AO353_07905 at 1744.738 kb on - strand, within AO353_07905 at 1744.764 kb on - strand, within AO353_07905 at 1744.770 kb on - strand, within AO353_07905 at 1744.821 kb on - strand, within AO353_07905 at 1744.884 kb on + strand, within AO353_07905 at 1744.887 kb on + strand, within AO353_07905 at 1744.907 kb on - strand at 1745.058 kb on + strand at 1745.059 kb on - strand at 1745.066 kb on - strand at 1745.115 kb on - strand, within AO353_07910 at 1745.158 kb on - strand, within AO353_07910 at 1745.179 kb on + strand, within AO353_07910 at 1745.274 kb on - strand, within AO353_07910 at 1745.307 kb on + strand, within AO353_07910 at 1745.390 kb on + strand at 1745.390 kb on + strand at 1745.391 kb on - strand at 1745.480 kb on + strand at 1745.481 kb on - strand at 1745.509 kb on + strand at 1745.509 kb on + strand at 1745.536 kb on + strand at 1745.547 kb on - strand at 1745.623 kb on - strand at 1745.650 kb on - strand at 1745.693 kb on + strand at 1745.699 kb on + strand at 1745.727 kb on - strand, within AO353_07915 at 1745.727 kb on - strand, within AO353_07915 at 1745.734 kb on - strand, within AO353_07915 at 1745.771 kb on + strand, within AO353_07915 at 1745.772 kb on - strand, within AO353_07915 at 1745.848 kb on + strand, within AO353_07915 at 1745.848 kb on + strand, within AO353_07915 at 1745.872 kb on - strand, within AO353_07915 at 1745.883 kb on - strand, within AO353_07915 at 1745.916 kb on - strand, within AO353_07915 at 1745.916 kb on - strand, within AO353_07915 at 1745.916 kb on - strand, within AO353_07915 at 1745.980 kb on + strand, within AO353_07915 at 1746.041 kb on + strand at 1746.132 kb on - strand at 1746.158 kb on + strand at 1746.158 kb on + strand at 1746.177 kb on - strand at 1746.177 kb on - strand at 1746.218 kb on + strand at 1746.218 kb on + strand at 1746.219 kb on - strand at 1746.219 kb on - strand at 1746.265 kb on - strand at 1746.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.002 mg/ml remove 1,744,189 - +0.3 1,744,198 + -1.6 1,744,409 - -0.5 1,744,439 - -1.9 1,744,527 + AO353_07905 0.21 +0.1 1,744,530 - AO353_07905 0.21 -0.4 1,744,547 - AO353_07905 0.24 +0.8 1,744,695 + AO353_07905 0.52 -1.1 1,744,695 + AO353_07905 0.52 -1.4 1,744,737 + AO353_07905 0.59 -0.2 1,744,738 - AO353_07905 0.60 -0.6 1,744,764 - AO353_07905 0.64 -1.2 1,744,770 - AO353_07905 0.66 -1.4 1,744,821 - AO353_07905 0.75 +0.3 1,744,884 + AO353_07905 0.87 -0.7 1,744,887 + AO353_07905 0.87 +0.7 1,744,907 - -1.1 1,745,058 + +0.8 1,745,059 - -1.7 1,745,066 - -0.8 1,745,115 - AO353_07910 0.18 -1.9 1,745,158 - AO353_07910 0.34 -1.5 1,745,179 + AO353_07910 0.41 +0.1 1,745,274 - AO353_07910 0.77 -1.5 1,745,307 + AO353_07910 0.89 +0.8 1,745,390 + -0.1 1,745,390 + -0.8 1,745,391 - +0.8 1,745,480 + -0.7 1,745,481 - +0.8 1,745,509 + +2.7 1,745,509 + -0.2 1,745,536 + +0.6 1,745,547 - -0.9 1,745,623 - -0.4 1,745,650 - +0.7 1,745,693 + +0.0 1,745,699 + +1.4 1,745,727 - AO353_07915 0.17 -0.9 1,745,727 - AO353_07915 0.17 -0.4 1,745,734 - AO353_07915 0.18 -1.0 1,745,771 + AO353_07915 0.28 -0.4 1,745,772 - AO353_07915 0.29 -0.7 1,745,848 + AO353_07915 0.49 +0.9 1,745,848 + AO353_07915 0.49 -0.4 1,745,872 - AO353_07915 0.55 -0.9 1,745,883 - AO353_07915 0.58 -1.0 1,745,916 - AO353_07915 0.67 -1.2 1,745,916 - AO353_07915 0.67 +0.5 1,745,916 - AO353_07915 0.67 +0.7 1,745,980 + AO353_07915 0.84 +0.1 1,746,041 + +0.4 1,746,132 - -0.7 1,746,158 + -0.3 1,746,158 + -0.6 1,746,177 - -0.5 1,746,177 - +0.3 1,746,218 + -1.7 1,746,218 + -0.7 1,746,219 - +0.4 1,746,219 - +1.6 1,746,265 - +1.3 1,746,312 - +0.1
Or see this region's nucleotide sequence