Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02640

Experiment: A22 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02635 and AO353_02640 overlap by 4 nucleotidesAO353_02640 and AO353_02645 are separated by 473 nucleotides AO353_02635: AO353_02635 - cobyrinic acid a,c-diamide synthase, at 561,349 to 562,686 _02635 AO353_02640: AO353_02640 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 562,683 to 563,294 _02640 AO353_02645: AO353_02645 - hypothetical protein, at 563,768 to 564,352 _02645 Position (kb) 562 563 564Strain fitness (log2 ratio) -3 -2 -1 0 1at 561.707 kb on + strand, within AO353_02635at 561.707 kb on + strand, within AO353_02635at 561.707 kb on + strand, within AO353_02635at 561.707 kb on + strand, within AO353_02635at 561.708 kb on - strand, within AO353_02635at 561.708 kb on - strand, within AO353_02635at 561.708 kb on - strand, within AO353_02635at 561.833 kb on + strand, within AO353_02635at 561.833 kb on + strand, within AO353_02635at 561.833 kb on + strand, within AO353_02635at 561.834 kb on - strand, within AO353_02635at 561.834 kb on - strand, within AO353_02635at 561.834 kb on - strand, within AO353_02635at 561.834 kb on - strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.930 kb on - strand, within AO353_02635at 561.930 kb on - strand, within AO353_02635at 562.172 kb on + strand, within AO353_02635at 562.499 kb on + strand, within AO353_02635at 562.499 kb on + strand, within AO353_02635at 562.804 kb on - strand, within AO353_02640at 562.864 kb on + strand, within AO353_02640at 563.336 kb on + strandat 563.336 kb on + strandat 563.337 kb on - strandat 563.337 kb on - strandat 563.342 kb on + strandat 563.342 kb on + strandat 563.481 kb on + strandat 563.489 kb on + strandat 563.489 kb on + strandat 563.489 kb on + strandat 563.489 kb on + strandat 563.489 kb on + strandat 563.490 kb on - strandat 563.490 kb on - strandat 563.612 kb on + strandat 563.612 kb on + strandat 563.613 kb on - strandat 563.638 kb on + strandat 563.638 kb on + strandat 563.638 kb on + strandat 563.638 kb on + strandat 563.639 kb on - strandat 563.639 kb on - strandat 563.740 kb on + strandat 563.740 kb on + strandat 563.741 kb on - strandat 563.741 kb on - strandat 563.745 kb on + strandat 563.745 kb on + strandat 563.745 kb on + strandat 563.745 kb on + strandat 563.745 kb on + strandat 563.745 kb on + strandat 563.746 kb on - strandat 563.746 kb on - strandat 563.746 kb on - strandat 563.746 kb on - strandat 563.746 kb on - strandat 563.746 kb on - strandat 563.850 kb on - strand, within AO353_02645at 563.882 kb on + strand, within AO353_02645at 563.995 kb on + strand, within AO353_02645at 563.995 kb on + strand, within AO353_02645at 563.995 kb on + strand, within AO353_02645at 563.996 kb on - strand, within AO353_02645at 563.996 kb on - strand, within AO353_02645at 564.041 kb on + strand, within AO353_02645at 564.041 kb on + strand, within AO353_02645at 564.134 kb on + strand, within AO353_02645at 564.134 kb on + strand, within AO353_02645at 564.197 kb on - strand, within AO353_02645at 564.264 kb on - strand, within AO353_02645at 564.278 kb on + strand, within AO353_02645

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.002 mg/ml
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561,707 + AO353_02635 0.27 +0.6
561,707 + AO353_02635 0.27 +0.0
561,707 + AO353_02635 0.27 +0.6
561,707 + AO353_02635 0.27 +0.5
561,708 - AO353_02635 0.27 -0.7
561,708 - AO353_02635 0.27 +0.2
561,708 - AO353_02635 0.27 -1.1
561,833 + AO353_02635 0.36 -1.4
561,833 + AO353_02635 0.36 -0.7
561,833 + AO353_02635 0.36 +0.9
561,834 - AO353_02635 0.36 -0.7
561,834 - AO353_02635 0.36 +0.9
561,834 - AO353_02635 0.36 +1.4
561,834 - AO353_02635 0.36 -2.7
561,929 + AO353_02635 0.43 -1.7
561,929 + AO353_02635 0.43 -0.4
561,929 + AO353_02635 0.43 +0.3
561,929 + AO353_02635 0.43 +0.3
561,929 + AO353_02635 0.43 -0.7
561,930 - AO353_02635 0.43 -0.4
561,930 - AO353_02635 0.43 +0.5
562,172 + AO353_02635 0.62 -1.0
562,499 + AO353_02635 0.86 -0.7
562,499 + AO353_02635 0.86 +1.3
562,804 - AO353_02640 0.20 -0.9
562,864 + AO353_02640 0.30 -0.9
563,336 + +1.0
563,336 + +0.3
563,337 - +0.5
563,337 - -2.1
563,342 + -0.6
563,342 + -0.3
563,481 + +0.5
563,489 + +0.1
563,489 + +0.6
563,489 + +0.1
563,489 + +1.1
563,489 + -2.7
563,490 - +1.7
563,490 - -2.5
563,612 + +0.6
563,612 + -0.9
563,613 - -0.1
563,638 + -0.9
563,638 + -0.4
563,638 + -0.3
563,638 + -0.6
563,639 - +0.7
563,639 - -0.7
563,740 + +0.6
563,740 + +0.5
563,741 - -0.2
563,741 - +1.0
563,745 + +0.1
563,745 + -2.1
563,745 + +1.1
563,745 + +0.7
563,745 + -0.6
563,745 + +0.8
563,746 - +0.7
563,746 - +0.1
563,746 - -1.7
563,746 - -0.1
563,746 - +1.7
563,746 - -0.1
563,850 - AO353_02645 0.14 -1.2
563,882 + AO353_02645 0.19 +0.1
563,995 + AO353_02645 0.39 +0.4
563,995 + AO353_02645 0.39 -0.7
563,995 + AO353_02645 0.39 -0.2
563,996 - AO353_02645 0.39 +0.7
563,996 - AO353_02645 0.39 +1.1
564,041 + AO353_02645 0.47 -0.4
564,041 + AO353_02645 0.47 +0.3
564,134 + AO353_02645 0.63 -0.1
564,134 + AO353_02645 0.63 -1.1
564,197 - AO353_02645 0.73 -0.6
564,264 - AO353_02645 0.85 -2.9
564,278 + AO353_02645 0.87 +1.5

Or see this region's nucleotide sequence