Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01565

Experiment: A22 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01560 and AO353_01565 are separated by 29 nucleotidesAO353_01565 and AO353_01570 overlap by 4 nucleotides AO353_01560: AO353_01560 - type II secretion system protein, at 332,666 to 333,628 _01560 AO353_01565: AO353_01565 - secretion system protein, at 333,658 to 334,644 _01565 AO353_01570: AO353_01570 - pilus assembly protein CpaF, at 334,641 to 336,083 _01570 Position (kb) 333 334 335Strain fitness (log2 ratio) -2 -1 0 1 2 3at 332.662 kb on + strandat 332.662 kb on + strandat 332.662 kb on + strandat 332.663 kb on - strandat 332.663 kb on - strandat 332.663 kb on - strandat 332.753 kb on + strandat 332.754 kb on - strandat 332.826 kb on + strand, within AO353_01560at 332.826 kb on + strand, within AO353_01560at 332.826 kb on + strand, within AO353_01560at 332.826 kb on + strand, within AO353_01560at 332.826 kb on + strand, within AO353_01560at 332.826 kb on + strand, within AO353_01560at 332.826 kb on + strand, within AO353_01560at 332.826 kb on + strand, within AO353_01560at 332.826 kb on + strand, within AO353_01560at 332.826 kb on + strand, within AO353_01560at 332.826 kb on + strand, within AO353_01560at 332.827 kb on - strand, within AO353_01560at 332.827 kb on - strand, within AO353_01560at 332.827 kb on - strand, within AO353_01560at 332.827 kb on - strand, within AO353_01560at 332.827 kb on - strand, within AO353_01560at 332.827 kb on - strand, within AO353_01560at 332.827 kb on - strand, within AO353_01560at 332.827 kb on - strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.150 kb on + strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.151 kb on - strand, within AO353_01560at 333.264 kb on - strand, within AO353_01560at 333.294 kb on + strand, within AO353_01560at 333.294 kb on + strand, within AO353_01560at 333.294 kb on + strand, within AO353_01560at 333.294 kb on + strand, within AO353_01560at 333.294 kb on + strand, within AO353_01560at 333.295 kb on - strand, within AO353_01560at 333.295 kb on - strand, within AO353_01560at 333.295 kb on - strand, within AO353_01560at 333.295 kb on - strand, within AO353_01560at 333.295 kb on - strand, within AO353_01560at 333.515 kb on + strand, within AO353_01560at 333.515 kb on + strand, within AO353_01560at 333.541 kb on + strandat 333.542 kb on - strandat 333.621 kb on + strandat 333.621 kb on + strandat 333.621 kb on + strandat 333.621 kb on + strandat 333.622 kb on - strandat 333.622 kb on - strandat 333.622 kb on - strandat 333.622 kb on - strandat 333.659 kb on + strandat 333.660 kb on - strandat 333.771 kb on - strand, within AO353_01565at 333.771 kb on - strand, within AO353_01565at 333.907 kb on + strand, within AO353_01565at 333.907 kb on + strand, within AO353_01565at 333.907 kb on + strand, within AO353_01565at 333.908 kb on - strand, within AO353_01565at 333.919 kb on + strand, within AO353_01565at 333.920 kb on - strand, within AO353_01565at 334.040 kb on + strand, within AO353_01565at 334.040 kb on + strand, within AO353_01565at 334.040 kb on + strand, within AO353_01565at 334.040 kb on + strand, within AO353_01565at 334.040 kb on + strand, within AO353_01565at 334.040 kb on + strand, within AO353_01565at 334.041 kb on - strand, within AO353_01565at 334.041 kb on - strandat 334.041 kb on - strand, within AO353_01565at 334.041 kb on - strand, within AO353_01565at 334.041 kb on - strand, within AO353_01565at 334.355 kb on + strand, within AO353_01565at 334.398 kb on + strand, within AO353_01565at 334.398 kb on + strand, within AO353_01565at 334.398 kb on + strand, within AO353_01565at 334.398 kb on + strand, within AO353_01565at 334.399 kb on - strand, within AO353_01565at 334.399 kb on - strand, within AO353_01565at 334.399 kb on - strand, within AO353_01565at 334.448 kb on + strand, within AO353_01565at 334.449 kb on - strand, within AO353_01565at 334.463 kb on - strand, within AO353_01565at 334.473 kb on + strand, within AO353_01565at 334.473 kb on + strand, within AO353_01565at 334.473 kb on + strand, within AO353_01565at 334.474 kb on - strand, within AO353_01565at 334.474 kb on - strand, within AO353_01565at 334.474 kb on - strand, within AO353_01565at 334.633 kb on + strandat 334.633 kb on + strandat 334.633 kb on + strandat 334.633 kb on + strandat 334.634 kb on - strandat 334.634 kb on - strandat 334.635 kb on + strandat 334.635 kb on + strandat 334.635 kb on + strandat 334.635 kb on + strandat 334.635 kb on + strandat 334.635 kb on + strandat 334.635 kb on + strandat 334.635 kb on + strandat 334.635 kb on + strandat 334.635 kb on + strandat 334.635 kb on + strandat 334.635 kb on + strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 334.636 kb on - strandat 335.328 kb on + strand, within AO353_01570at 335.328 kb on + strand, within AO353_01570at 335.328 kb on + strand, within AO353_01570at 335.328 kb on + strand, within AO353_01570at 335.328 kb on + strand, within AO353_01570at 335.328 kb on + strand, within AO353_01570at 335.329 kb on - strand, within AO353_01570at 335.329 kb on - strand, within AO353_01570at 335.329 kb on - strand, within AO353_01570at 335.329 kb on - strand, within AO353_01570at 335.329 kb on - strand, within AO353_01570at 335.329 kb on - strand, within AO353_01570at 335.478 kb on - strand, within AO353_01570at 335.478 kb on - strand, within AO353_01570at 335.478 kb on - strand, within AO353_01570at 335.644 kb on + strand, within AO353_01570at 335.644 kb on + strand, within AO353_01570at 335.644 kb on + strand, within AO353_01570at 335.644 kb on + strand, within AO353_01570at 335.644 kb on + strand, within AO353_01570at 335.644 kb on + strand, within AO353_01570at 335.644 kb on + strand, within AO353_01570at 335.644 kb on + strand, within AO353_01570at 335.644 kb on + strand, within AO353_01570

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.002 mg/ml
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332,662 + +0.0
332,662 + +1.6
332,662 + -0.1
332,663 - +0.1
332,663 - +0.1
332,663 - +1.0
332,753 + -2.1
332,754 - -0.6
332,826 + AO353_01560 0.17 -1.3
332,826 + AO353_01560 0.17 -0.6
332,826 + AO353_01560 0.17 -1.2
332,826 + AO353_01560 0.17 -0.3
332,826 + AO353_01560 0.17 -0.7
332,826 + AO353_01560 0.17 -0.5
332,826 + AO353_01560 0.17 -0.7
332,826 + AO353_01560 0.17 +0.0
332,826 + AO353_01560 0.17 +3.6
332,826 + AO353_01560 0.17 +0.8
332,826 + AO353_01560 0.17 -0.4
332,827 - AO353_01560 0.17 -1.0
332,827 - AO353_01560 0.17 -1.4
332,827 - AO353_01560 0.17 +0.9
332,827 - AO353_01560 0.17 +0.0
332,827 - AO353_01560 0.17 -0.5
332,827 - AO353_01560 0.17 +0.0
332,827 - AO353_01560 0.17 -0.7
332,827 - AO353_01560 0.17 -0.2
333,150 + AO353_01560 0.50 +0.2
333,150 + AO353_01560 0.50 -0.6
333,150 + AO353_01560 0.50 +0.3
333,150 + AO353_01560 0.50 +0.0
333,150 + AO353_01560 0.50 +0.0
333,150 + AO353_01560 0.50 +0.2
333,150 + AO353_01560 0.50 -0.8
333,150 + AO353_01560 0.50 +0.2
333,150 + AO353_01560 0.50 -0.5
333,150 + AO353_01560 0.50 -0.7
333,150 + AO353_01560 0.50 -2.3
333,150 + AO353_01560 0.50 -1.2
333,150 + AO353_01560 0.50 +0.3
333,150 + AO353_01560 0.50 -0.2
333,150 + AO353_01560 0.50 -0.4
333,151 - AO353_01560 0.50 +0.0
333,151 - AO353_01560 0.50 -1.6
333,151 - AO353_01560 0.50 +0.0
333,151 - AO353_01560 0.50 +0.2
333,151 - AO353_01560 0.50 -0.9
333,151 - AO353_01560 0.50 +1.4
333,151 - AO353_01560 0.50 -0.1
333,151 - AO353_01560 0.50 -0.4
333,151 - AO353_01560 0.50 -0.4
333,151 - AO353_01560 0.50 +0.0
333,151 - AO353_01560 0.50 +0.3
333,151 - AO353_01560 0.50 +0.1
333,151 - AO353_01560 0.50 +0.3
333,151 - AO353_01560 0.50 -0.4
333,151 - AO353_01560 0.50 -0.7
333,151 - AO353_01560 0.50 -0.6
333,264 - AO353_01560 0.62 -1.4
333,294 + AO353_01560 0.65 -1.0
333,294 + AO353_01560 0.65 -0.0
333,294 + AO353_01560 0.65 +0.0
333,294 + AO353_01560 0.65 -1.7
333,294 + AO353_01560 0.65 +0.4
333,295 - AO353_01560 0.65 +1.1
333,295 - AO353_01560 0.65 -0.2
333,295 - AO353_01560 0.65 -2.0
333,295 - AO353_01560 0.65 -1.6
333,295 - AO353_01560 0.65 +0.0
333,515 + AO353_01560 0.88 -1.0
333,515 + AO353_01560 0.88 +1.0
333,541 + -2.1
333,542 - +0.3
333,621 + +0.3
333,621 + -0.9
333,621 + -0.7
333,621 + +0.6
333,622 - +0.0
333,622 - +0.4
333,622 - +0.4
333,622 - -0.3
333,659 + +0.8
333,660 - +0.4
333,771 - AO353_01565 0.11 -0.5
333,771 - AO353_01565 0.11 -1.0
333,907 + AO353_01565 0.25 +0.9
333,907 + AO353_01565 0.25 +0.2
333,907 + AO353_01565 0.25 +1.9
333,908 - AO353_01565 0.25 +0.5
333,919 + AO353_01565 0.26 -0.2
333,920 - AO353_01565 0.27 +0.7
334,040 + AO353_01565 0.39 +0.8
334,040 + AO353_01565 0.39 +1.1
334,040 + AO353_01565 0.39 +0.9
334,040 + AO353_01565 0.39 +1.0
334,040 + AO353_01565 0.39 +0.9
334,040 + AO353_01565 0.39 +1.0
334,041 - AO353_01565 0.39 +0.2
334,041 - -0.7
334,041 - AO353_01565 0.39 -1.3
334,041 - AO353_01565 0.39 +0.4
334,041 - AO353_01565 0.39 +0.2
334,355 + AO353_01565 0.71 +0.6
334,398 + AO353_01565 0.75 +0.6
334,398 + AO353_01565 0.75 +1.0
334,398 + AO353_01565 0.75 +0.0
334,398 + AO353_01565 0.75 -0.4
334,399 - AO353_01565 0.75 +0.6
334,399 - AO353_01565 0.75 -0.6
334,399 - AO353_01565 0.75 +1.1
334,448 + AO353_01565 0.80 +1.2
334,449 - AO353_01565 0.80 +0.3
334,463 - AO353_01565 0.82 +0.9
334,473 + AO353_01565 0.83 -0.8
334,473 + AO353_01565 0.83 -0.3
334,473 + AO353_01565 0.83 -1.0
334,474 - AO353_01565 0.83 -0.1
334,474 - AO353_01565 0.83 -0.6
334,474 - AO353_01565 0.83 +2.6
334,633 + +0.0
334,633 + +0.0
334,633 + -0.6
334,633 + -1.1
334,634 - -0.7
334,634 - +0.0
334,635 + -0.1
334,635 + +0.9
334,635 + -1.3
334,635 + +0.3
334,635 + +0.6
334,635 + -0.7
334,635 + +0.5
334,635 + -1.9
334,635 + +0.5
334,635 + -0.5
334,635 + -0.4
334,635 + +0.3
334,636 - -1.4
334,636 - +0.6
334,636 - +0.6
334,636 - +1.0
334,636 - +0.0
334,636 - -0.9
334,636 - +0.6
334,636 - +1.6
334,636 - +0.2
334,636 - -1.2
334,636 - +1.0
334,636 - +0.4
334,636 - +1.0
334,636 - +0.1
334,636 - +0.9
334,636 - -0.5
334,636 - +0.0
334,636 - +0.0
334,636 - -1.0
334,636 - -0.3
334,636 - -1.4
334,636 - -0.9
334,636 - +0.3
334,636 - +0.1
334,636 - +0.9
334,636 - -0.7
335,328 + AO353_01570 0.48 -0.5
335,328 + AO353_01570 0.48 +0.2
335,328 + AO353_01570 0.48 -1.6
335,328 + AO353_01570 0.48 -0.7
335,328 + AO353_01570 0.48 -0.2
335,328 + AO353_01570 0.48 -0.2
335,329 - AO353_01570 0.48 +0.3
335,329 - AO353_01570 0.48 -1.2
335,329 - AO353_01570 0.48 -1.2
335,329 - AO353_01570 0.48 -0.2
335,329 - AO353_01570 0.48 -0.4
335,329 - AO353_01570 0.48 +1.6
335,478 - AO353_01570 0.58 -0.5
335,478 - AO353_01570 0.58 +0.0
335,478 - AO353_01570 0.58 -1.0
335,644 + AO353_01570 0.70 -0.2
335,644 + AO353_01570 0.70 -1.0
335,644 + AO353_01570 0.70 +0.1
335,644 + AO353_01570 0.70 -1.1
335,644 + AO353_01570 0.70 -0.5
335,644 + AO353_01570 0.70 -0.6
335,644 + AO353_01570 0.70 +0.3
335,644 + AO353_01570 0.70 -2.1
335,644 + AO353_01570 0.70 -2.1

Or see this region's nucleotide sequence