Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS14605 and ABZR86_RS14610 are separated by 77 nucleotides ABZR86_RS14610 and ABZR86_RS14615 are separated by 170 nucleotides ABZR86_RS14615 and ABZR86_RS14620 are separated by 484 nucleotides
ABZR86_RS14605: ABZR86_RS14605 - fimbrial protein, at 3,267,307 to 3,268,296
_RS14605
ABZR86_RS14610: ABZR86_RS14610 - conjugal transfer protein TrbN, at 3,268,374 to 3,268,553
_RS14610
ABZR86_RS14615: ABZR86_RS14615 - fimbrial protein, at 3,268,724 to 3,269,281
_RS14615
ABZR86_RS14620: ABZR86_RS14620 - response regulator transcription factor, at 3,269,766 to 3,270,401
_RS14620
Position (kb)
3268
3269
3270 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3267.845 kb on + strand, within ABZR86_RS14605 at 3267.872 kb on + strand, within ABZR86_RS14605 at 3267.872 kb on + strand, within ABZR86_RS14605 at 3267.873 kb on - strand, within ABZR86_RS14605 at 3267.873 kb on - strand, within ABZR86_RS14605 at 3267.873 kb on - strand, within ABZR86_RS14605 at 3267.873 kb on - strand, within ABZR86_RS14605 at 3267.882 kb on - strand, within ABZR86_RS14605 at 3267.882 kb on - strand, within ABZR86_RS14605 at 3267.951 kb on - strand, within ABZR86_RS14605 at 3268.206 kb on + strand at 3268.206 kb on + strand at 3268.207 kb on - strand at 3268.208 kb on + strand at 3268.208 kb on + strand at 3268.209 kb on - strand at 3268.209 kb on - strand at 3268.236 kb on + strand at 3268.277 kb on - strand at 3268.471 kb on + strand, within ABZR86_RS14610 at 3268.472 kb on - strand, within ABZR86_RS14610 at 3268.547 kb on - strand at 3268.552 kb on + strand at 3268.552 kb on + strand at 3268.552 kb on + strand at 3268.553 kb on - strand at 3268.553 kb on - strand at 3268.731 kb on + strand at 3268.732 kb on - strand at 3268.732 kb on - strand at 3268.735 kb on - strand at 3268.735 kb on - strand at 3268.743 kb on + strand at 3268.744 kb on - strand at 3268.791 kb on + strand, within ABZR86_RS14615 at 3268.792 kb on - strand, within ABZR86_RS14615 at 3268.935 kb on - strand, within ABZR86_RS14615 at 3268.935 kb on - strand, within ABZR86_RS14615 at 3268.946 kb on - strand, within ABZR86_RS14615 at 3269.055 kb on + strand, within ABZR86_RS14615 at 3269.180 kb on - strand, within ABZR86_RS14615 at 3269.180 kb on - strand, within ABZR86_RS14615 at 3269.465 kb on + strand at 3269.466 kb on - strand at 3270.017 kb on + strand, within ABZR86_RS14620 at 3270.109 kb on + strand, within ABZR86_RS14620 at 3270.110 kb on - strand, within ABZR86_RS14620 at 3270.111 kb on + strand, within ABZR86_RS14620 at 3270.112 kb on - strand, within ABZR86_RS14620 at 3270.112 kb on - strand, within ABZR86_RS14620 at 3270.112 kb on - strand, within ABZR86_RS14620 at 3270.112 kb on - strand, within ABZR86_RS14620
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 3,267,845 + ABZR86_RS14605 0.54 -0.9 3,267,872 + ABZR86_RS14605 0.57 -0.3 3,267,872 + ABZR86_RS14605 0.57 -0.1 3,267,873 - ABZR86_RS14605 0.57 -0.5 3,267,873 - ABZR86_RS14605 0.57 +0.8 3,267,873 - ABZR86_RS14605 0.57 -0.3 3,267,873 - ABZR86_RS14605 0.57 +0.7 3,267,882 - ABZR86_RS14605 0.58 +0.5 3,267,882 - ABZR86_RS14605 0.58 +0.0 3,267,951 - ABZR86_RS14605 0.65 +0.7 3,268,206 + -0.2 3,268,206 + -0.2 3,268,207 - +2.5 3,268,208 + +0.2 3,268,208 + +1.0 3,268,209 - +0.1 3,268,209 - +0.1 3,268,236 + +0.4 3,268,277 - +0.4 3,268,471 + ABZR86_RS14610 0.54 -0.6 3,268,472 - ABZR86_RS14610 0.54 -1.0 3,268,547 - +0.3 3,268,552 + +0.8 3,268,552 + +0.0 3,268,552 + -0.1 3,268,553 - +0.7 3,268,553 - +0.2 3,268,731 + -0.0 3,268,732 - +0.1 3,268,732 - -0.7 3,268,735 - +0.4 3,268,735 - +0.1 3,268,743 + -1.9 3,268,744 - -0.9 3,268,791 + ABZR86_RS14615 0.12 -0.9 3,268,792 - ABZR86_RS14615 0.12 +0.1 3,268,935 - ABZR86_RS14615 0.38 +0.4 3,268,935 - ABZR86_RS14615 0.38 -0.4 3,268,946 - ABZR86_RS14615 0.40 +0.1 3,269,055 + ABZR86_RS14615 0.59 -0.8 3,269,180 - ABZR86_RS14615 0.82 +0.6 3,269,180 - ABZR86_RS14615 0.82 +0.5 3,269,465 + +0.1 3,269,466 - -0.1 3,270,017 + ABZR86_RS14620 0.39 +0.4 3,270,109 + ABZR86_RS14620 0.54 -1.2 3,270,110 - ABZR86_RS14620 0.54 -0.1 3,270,111 + ABZR86_RS14620 0.54 +0.4 3,270,112 - ABZR86_RS14620 0.54 -0.4 3,270,112 - ABZR86_RS14620 0.54 -0.4 3,270,112 - ABZR86_RS14620 0.54 +0.1 3,270,112 - ABZR86_RS14620 0.54 -0.2
Or see this region's nucleotide sequence