Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14615

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS14605 and ABZR86_RS14610 are separated by 77 nucleotidesABZR86_RS14610 and ABZR86_RS14615 are separated by 170 nucleotidesABZR86_RS14615 and ABZR86_RS14620 are separated by 484 nucleotides ABZR86_RS14605: ABZR86_RS14605 - fimbrial protein, at 3,267,307 to 3,268,296 _RS14605 ABZR86_RS14610: ABZR86_RS14610 - conjugal transfer protein TrbN, at 3,268,374 to 3,268,553 _RS14610 ABZR86_RS14615: ABZR86_RS14615 - fimbrial protein, at 3,268,724 to 3,269,281 _RS14615 ABZR86_RS14620: ABZR86_RS14620 - response regulator transcription factor, at 3,269,766 to 3,270,401 _RS14620 Position (kb) 3268 3269 3270Strain fitness (log2 ratio) -2 -1 0 1 2at 3267.845 kb on + strand, within ABZR86_RS14605at 3267.872 kb on + strand, within ABZR86_RS14605at 3267.872 kb on + strand, within ABZR86_RS14605at 3267.873 kb on - strand, within ABZR86_RS14605at 3267.873 kb on - strand, within ABZR86_RS14605at 3267.873 kb on - strand, within ABZR86_RS14605at 3267.873 kb on - strand, within ABZR86_RS14605at 3267.882 kb on - strand, within ABZR86_RS14605at 3267.882 kb on - strand, within ABZR86_RS14605at 3267.951 kb on - strand, within ABZR86_RS14605at 3268.206 kb on + strandat 3268.206 kb on + strandat 3268.207 kb on - strandat 3268.208 kb on + strandat 3268.208 kb on + strandat 3268.209 kb on - strandat 3268.209 kb on - strandat 3268.236 kb on + strandat 3268.277 kb on - strandat 3268.471 kb on + strand, within ABZR86_RS14610at 3268.472 kb on - strand, within ABZR86_RS14610at 3268.547 kb on - strandat 3268.552 kb on + strandat 3268.552 kb on + strandat 3268.552 kb on + strandat 3268.553 kb on - strandat 3268.553 kb on - strandat 3268.731 kb on + strandat 3268.732 kb on - strandat 3268.732 kb on - strandat 3268.735 kb on - strandat 3268.735 kb on - strandat 3268.743 kb on + strandat 3268.744 kb on - strandat 3268.791 kb on + strand, within ABZR86_RS14615at 3268.792 kb on - strand, within ABZR86_RS14615at 3268.935 kb on - strand, within ABZR86_RS14615at 3268.935 kb on - strand, within ABZR86_RS14615at 3268.946 kb on - strand, within ABZR86_RS14615at 3269.055 kb on + strand, within ABZR86_RS14615at 3269.180 kb on - strand, within ABZR86_RS14615at 3269.180 kb on - strand, within ABZR86_RS14615at 3269.465 kb on + strandat 3269.466 kb on - strandat 3270.017 kb on + strand, within ABZR86_RS14620at 3270.109 kb on + strand, within ABZR86_RS14620at 3270.110 kb on - strand, within ABZR86_RS14620at 3270.111 kb on + strand, within ABZR86_RS14620at 3270.112 kb on - strand, within ABZR86_RS14620at 3270.112 kb on - strand, within ABZR86_RS14620at 3270.112 kb on - strand, within ABZR86_RS14620at 3270.112 kb on - strand, within ABZR86_RS14620

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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3,267,845 + ABZR86_RS14605 0.54 -0.9
3,267,872 + ABZR86_RS14605 0.57 -0.3
3,267,872 + ABZR86_RS14605 0.57 -0.1
3,267,873 - ABZR86_RS14605 0.57 -0.5
3,267,873 - ABZR86_RS14605 0.57 +0.8
3,267,873 - ABZR86_RS14605 0.57 -0.3
3,267,873 - ABZR86_RS14605 0.57 +0.7
3,267,882 - ABZR86_RS14605 0.58 +0.5
3,267,882 - ABZR86_RS14605 0.58 +0.0
3,267,951 - ABZR86_RS14605 0.65 +0.7
3,268,206 + -0.2
3,268,206 + -0.2
3,268,207 - +2.5
3,268,208 + +0.2
3,268,208 + +1.0
3,268,209 - +0.1
3,268,209 - +0.1
3,268,236 + +0.4
3,268,277 - +0.4
3,268,471 + ABZR86_RS14610 0.54 -0.6
3,268,472 - ABZR86_RS14610 0.54 -1.0
3,268,547 - +0.3
3,268,552 + +0.8
3,268,552 + +0.0
3,268,552 + -0.1
3,268,553 - +0.7
3,268,553 - +0.2
3,268,731 + -0.0
3,268,732 - +0.1
3,268,732 - -0.7
3,268,735 - +0.4
3,268,735 - +0.1
3,268,743 + -1.9
3,268,744 - -0.9
3,268,791 + ABZR86_RS14615 0.12 -0.9
3,268,792 - ABZR86_RS14615 0.12 +0.1
3,268,935 - ABZR86_RS14615 0.38 +0.4
3,268,935 - ABZR86_RS14615 0.38 -0.4
3,268,946 - ABZR86_RS14615 0.40 +0.1
3,269,055 + ABZR86_RS14615 0.59 -0.8
3,269,180 - ABZR86_RS14615 0.82 +0.6
3,269,180 - ABZR86_RS14615 0.82 +0.5
3,269,465 + +0.1
3,269,466 - -0.1
3,270,017 + ABZR86_RS14620 0.39 +0.4
3,270,109 + ABZR86_RS14620 0.54 -1.2
3,270,110 - ABZR86_RS14620 0.54 -0.1
3,270,111 + ABZR86_RS14620 0.54 +0.4
3,270,112 - ABZR86_RS14620 0.54 -0.4
3,270,112 - ABZR86_RS14620 0.54 -0.4
3,270,112 - ABZR86_RS14620 0.54 +0.1
3,270,112 - ABZR86_RS14620 0.54 -0.2

Or see this region's nucleotide sequence