Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14330

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS14325 and ABZR86_RS14330 are separated by 283 nucleotidesABZR86_RS14330 and ABZR86_RS14335 are separated by 282 nucleotides ABZR86_RS14325: ABZR86_RS14325 - EamA family transporter, at 3,190,377 to 3,191,261 _RS14325 ABZR86_RS14330: ABZR86_RS14330 - TonB-dependent receptor, at 3,191,545 to 3,193,992 _RS14330 ABZR86_RS14335: ABZR86_RS14335 - glycoside hydrolase family 3 protein, at 3,194,275 to 3,196,737 _RS14335 Position (kb) 3191 3192 3193 3194Strain fitness (log2 ratio) -3 -2 -1 0 1at 3190.742 kb on - strand, within ABZR86_RS14325at 3190.774 kb on + strand, within ABZR86_RS14325at 3190.774 kb on + strand, within ABZR86_RS14325at 3190.774 kb on + strand, within ABZR86_RS14325at 3190.774 kb on + strand, within ABZR86_RS14325at 3190.774 kb on + strand, within ABZR86_RS14325at 3190.774 kb on + strand, within ABZR86_RS14325at 3190.775 kb on - strand, within ABZR86_RS14325at 3190.775 kb on - strand, within ABZR86_RS14325at 3190.775 kb on - strand, within ABZR86_RS14325at 3190.775 kb on - strand, within ABZR86_RS14325at 3190.775 kb on - strand, within ABZR86_RS14325at 3190.775 kb on - strand, within ABZR86_RS14325at 3190.775 kb on - strand, within ABZR86_RS14325at 3190.775 kb on - strand, within ABZR86_RS14325at 3190.775 kb on - strand, within ABZR86_RS14325at 3190.807 kb on + strand, within ABZR86_RS14325at 3190.807 kb on + strand, within ABZR86_RS14325at 3190.807 kb on + strand, within ABZR86_RS14325at 3190.807 kb on + strand, within ABZR86_RS14325at 3190.807 kb on + strand, within ABZR86_RS14325at 3190.808 kb on - strand, within ABZR86_RS14325at 3190.808 kb on - strand, within ABZR86_RS14325at 3190.996 kb on + strand, within ABZR86_RS14325at 3190.996 kb on + strand, within ABZR86_RS14325at 3190.996 kb on + strand, within ABZR86_RS14325at 3190.996 kb on + strand, within ABZR86_RS14325at 3190.996 kb on + strand, within ABZR86_RS14325at 3190.996 kb on + strand, within ABZR86_RS14325at 3190.997 kb on - strand, within ABZR86_RS14325at 3190.997 kb on - strand, within ABZR86_RS14325at 3191.032 kb on + strand, within ABZR86_RS14325at 3191.125 kb on + strand, within ABZR86_RS14325at 3191.191 kb on + strandat 3191.192 kb on - strandat 3191.192 kb on - strandat 3191.192 kb on - strandat 3191.192 kb on - strandat 3191.192 kb on - strandat 3191.371 kb on + strandat 3191.372 kb on - strandat 3191.372 kb on - strandat 3191.372 kb on - strandat 3191.372 kb on - strandat 3191.372 kb on - strandat 3191.372 kb on - strandat 3191.372 kb on - strandat 3191.453 kb on + strandat 3191.453 kb on + strandat 3191.453 kb on + strandat 3191.454 kb on - strandat 3191.454 kb on - strandat 3191.454 kb on - strandat 3191.501 kb on + strandat 3191.502 kb on - strandat 3191.591 kb on + strandat 3191.591 kb on + strandat 3191.592 kb on - strandat 3191.604 kb on - strandat 3191.604 kb on - strandat 3191.715 kb on - strandat 3191.742 kb on - strandat 3191.801 kb on + strand, within ABZR86_RS14330at 3191.861 kb on + strand, within ABZR86_RS14330at 3191.862 kb on - strand, within ABZR86_RS14330at 3191.862 kb on - strand, within ABZR86_RS14330at 3191.879 kb on - strand, within ABZR86_RS14330at 3191.984 kb on + strand, within ABZR86_RS14330at 3192.056 kb on + strand, within ABZR86_RS14330at 3192.138 kb on - strand, within ABZR86_RS14330at 3192.179 kb on + strand, within ABZR86_RS14330at 3192.180 kb on - strand, within ABZR86_RS14330at 3192.180 kb on - strand, within ABZR86_RS14330at 3192.242 kb on + strand, within ABZR86_RS14330at 3192.267 kb on - strand, within ABZR86_RS14330at 3192.303 kb on - strand, within ABZR86_RS14330at 3192.441 kb on - strand, within ABZR86_RS14330at 3192.483 kb on - strand, within ABZR86_RS14330at 3192.483 kb on - strand, within ABZR86_RS14330at 3192.483 kb on - strand, within ABZR86_RS14330at 3192.483 kb on - strand, within ABZR86_RS14330at 3192.483 kb on - strand, within ABZR86_RS14330at 3192.483 kb on - strand, within ABZR86_RS14330at 3192.570 kb on + strand, within ABZR86_RS14330at 3192.570 kb on + strand, within ABZR86_RS14330at 3192.570 kb on + strand, within ABZR86_RS14330at 3192.570 kb on + strand, within ABZR86_RS14330at 3192.570 kb on + strand, within ABZR86_RS14330at 3192.570 kb on + strand, within ABZR86_RS14330at 3192.571 kb on - strand, within ABZR86_RS14330at 3192.571 kb on - strand, within ABZR86_RS14330at 3192.716 kb on + strand, within ABZR86_RS14330at 3192.716 kb on + strand, within ABZR86_RS14330at 3192.716 kb on + strand, within ABZR86_RS14330at 3192.716 kb on + strand, within ABZR86_RS14330at 3192.717 kb on - strand, within ABZR86_RS14330at 3192.717 kb on - strand, within ABZR86_RS14330at 3192.717 kb on - strand, within ABZR86_RS14330at 3192.783 kb on - strand, within ABZR86_RS14330at 3192.902 kb on + strand, within ABZR86_RS14330at 3192.903 kb on - strand, within ABZR86_RS14330at 3192.903 kb on - strand, within ABZR86_RS14330at 3192.912 kb on + strand, within ABZR86_RS14330at 3192.914 kb on + strand, within ABZR86_RS14330at 3192.914 kb on + strand, within ABZR86_RS14330at 3192.914 kb on + strand, within ABZR86_RS14330at 3192.915 kb on - strand, within ABZR86_RS14330at 3193.079 kb on + strand, within ABZR86_RS14330at 3193.080 kb on - strand, within ABZR86_RS14330at 3193.085 kb on + strand, within ABZR86_RS14330at 3193.163 kb on + strand, within ABZR86_RS14330at 3193.238 kb on + strand, within ABZR86_RS14330at 3193.290 kb on - strand, within ABZR86_RS14330at 3193.392 kb on - strand, within ABZR86_RS14330at 3193.392 kb on - strand, within ABZR86_RS14330at 3193.392 kb on - strand, within ABZR86_RS14330at 3193.392 kb on - strand, within ABZR86_RS14330at 3193.422 kb on - strand, within ABZR86_RS14330at 3193.575 kb on - strand, within ABZR86_RS14330at 3193.879 kb on + strandat 3193.879 kb on + strandat 3193.896 kb on + strandat 3194.005 kb on + strandat 3194.005 kb on + strandat 3194.006 kb on - strandat 3194.012 kb on + strandat 3194.013 kb on - strandat 3194.091 kb on + strandat 3194.091 kb on + strandat 3194.091 kb on + strandat 3194.091 kb on + strandat 3194.276 kb on + strandat 3194.277 kb on - strandat 3194.277 kb on - strandat 3194.277 kb on - strandat 3194.443 kb on - strandat 3194.678 kb on + strand, within ABZR86_RS14335at 3194.730 kb on + strand, within ABZR86_RS14335at 3194.778 kb on - strand, within ABZR86_RS14335at 3194.807 kb on + strand, within ABZR86_RS14335at 3194.807 kb on + strand, within ABZR86_RS14335at 3194.807 kb on + strand, within ABZR86_RS14335at 3194.808 kb on - strand, within ABZR86_RS14335at 3194.808 kb on - strand, within ABZR86_RS14335at 3194.951 kb on + strand, within ABZR86_RS14335at 3194.952 kb on - strand, within ABZR86_RS14335

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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3,190,742 - ABZR86_RS14325 0.41 +0.4
3,190,774 + ABZR86_RS14325 0.45 -0.1
3,190,774 + ABZR86_RS14325 0.45 -0.3
3,190,774 + ABZR86_RS14325 0.45 -1.6
3,190,774 + ABZR86_RS14325 0.45 +0.4
3,190,774 + ABZR86_RS14325 0.45 -0.4
3,190,774 + ABZR86_RS14325 0.45 -0.1
3,190,775 - ABZR86_RS14325 0.45 -0.8
3,190,775 - ABZR86_RS14325 0.45 -0.1
3,190,775 - ABZR86_RS14325 0.45 +0.1
3,190,775 - ABZR86_RS14325 0.45 -0.0
3,190,775 - ABZR86_RS14325 0.45 +1.3
3,190,775 - ABZR86_RS14325 0.45 +0.7
3,190,775 - ABZR86_RS14325 0.45 +0.5
3,190,775 - ABZR86_RS14325 0.45 +0.6
3,190,775 - ABZR86_RS14325 0.45 -0.0
3,190,807 + ABZR86_RS14325 0.49 +0.5
3,190,807 + ABZR86_RS14325 0.49 -0.0
3,190,807 + ABZR86_RS14325 0.49 -0.3
3,190,807 + ABZR86_RS14325 0.49 +0.2
3,190,807 + ABZR86_RS14325 0.49 -0.1
3,190,808 - ABZR86_RS14325 0.49 +0.0
3,190,808 - ABZR86_RS14325 0.49 -0.9
3,190,996 + ABZR86_RS14325 0.70 +0.2
3,190,996 + ABZR86_RS14325 0.70 +0.4
3,190,996 + ABZR86_RS14325 0.70 +0.2
3,190,996 + ABZR86_RS14325 0.70 -0.0
3,190,996 + ABZR86_RS14325 0.70 -0.5
3,190,996 + ABZR86_RS14325 0.70 +0.3
3,190,997 - ABZR86_RS14325 0.70 -0.1
3,190,997 - ABZR86_RS14325 0.70 +0.2
3,191,032 + ABZR86_RS14325 0.74 +0.7
3,191,125 + ABZR86_RS14325 0.85 -0.7
3,191,191 + -0.7
3,191,192 - +0.3
3,191,192 - +0.2
3,191,192 - -2.9
3,191,192 - +1.0
3,191,192 - -1.1
3,191,371 + -0.4
3,191,372 - +0.7
3,191,372 - -0.2
3,191,372 - +0.4
3,191,372 - +0.8
3,191,372 - +0.5
3,191,372 - +0.4
3,191,372 - -0.7
3,191,453 + -0.1
3,191,453 + +0.2
3,191,453 + -1.2
3,191,454 - +0.0
3,191,454 - +0.2
3,191,454 - -0.3
3,191,501 + +0.7
3,191,502 - -0.4
3,191,591 + +0.8
3,191,591 + +0.7
3,191,592 - -0.0
3,191,604 - -0.7
3,191,604 - +0.2
3,191,715 - +0.4
3,191,742 - +0.3
3,191,801 + ABZR86_RS14330 0.10 +0.2
3,191,861 + ABZR86_RS14330 0.13 -0.3
3,191,862 - ABZR86_RS14330 0.13 -0.2
3,191,862 - ABZR86_RS14330 0.13 -0.2
3,191,879 - ABZR86_RS14330 0.14 -0.0
3,191,984 + ABZR86_RS14330 0.18 -0.9
3,192,056 + ABZR86_RS14330 0.21 +0.9
3,192,138 - ABZR86_RS14330 0.24 -0.5
3,192,179 + ABZR86_RS14330 0.26 -0.4
3,192,180 - ABZR86_RS14330 0.26 -1.4
3,192,180 - ABZR86_RS14330 0.26 -0.9
3,192,242 + ABZR86_RS14330 0.28 +0.5
3,192,267 - ABZR86_RS14330 0.29 +0.5
3,192,303 - ABZR86_RS14330 0.31 -0.1
3,192,441 - ABZR86_RS14330 0.37 +0.1
3,192,483 - ABZR86_RS14330 0.38 +0.6
3,192,483 - ABZR86_RS14330 0.38 -0.8
3,192,483 - ABZR86_RS14330 0.38 -2.1
3,192,483 - ABZR86_RS14330 0.38 -1.8
3,192,483 - ABZR86_RS14330 0.38 -0.1
3,192,483 - ABZR86_RS14330 0.38 -0.4
3,192,570 + ABZR86_RS14330 0.42 +1.0
3,192,570 + ABZR86_RS14330 0.42 -1.0
3,192,570 + ABZR86_RS14330 0.42 +0.8
3,192,570 + ABZR86_RS14330 0.42 -0.5
3,192,570 + ABZR86_RS14330 0.42 -2.4
3,192,570 + ABZR86_RS14330 0.42 +0.1
3,192,571 - ABZR86_RS14330 0.42 -0.0
3,192,571 - ABZR86_RS14330 0.42 +0.2
3,192,716 + ABZR86_RS14330 0.48 +0.4
3,192,716 + ABZR86_RS14330 0.48 +0.5
3,192,716 + ABZR86_RS14330 0.48 +0.9
3,192,716 + ABZR86_RS14330 0.48 +0.0
3,192,717 - ABZR86_RS14330 0.48 +0.6
3,192,717 - ABZR86_RS14330 0.48 +0.5
3,192,717 - ABZR86_RS14330 0.48 +0.3
3,192,783 - ABZR86_RS14330 0.51 +0.6
3,192,902 + ABZR86_RS14330 0.55 +0.5
3,192,903 - ABZR86_RS14330 0.55 -0.5
3,192,903 - ABZR86_RS14330 0.55 -1.0
3,192,912 + ABZR86_RS14330 0.56 +0.2
3,192,914 + ABZR86_RS14330 0.56 +0.1
3,192,914 + ABZR86_RS14330 0.56 -0.7
3,192,914 + ABZR86_RS14330 0.56 -0.8
3,192,915 - ABZR86_RS14330 0.56 -0.3
3,193,079 + ABZR86_RS14330 0.63 -1.2
3,193,080 - ABZR86_RS14330 0.63 -1.7
3,193,085 + ABZR86_RS14330 0.63 -0.6
3,193,163 + ABZR86_RS14330 0.66 +0.4
3,193,238 + ABZR86_RS14330 0.69 -0.3
3,193,290 - ABZR86_RS14330 0.71 +0.4
3,193,392 - ABZR86_RS14330 0.75 +0.3
3,193,392 - ABZR86_RS14330 0.75 +0.5
3,193,392 - ABZR86_RS14330 0.75 +0.3
3,193,392 - ABZR86_RS14330 0.75 +0.2
3,193,422 - ABZR86_RS14330 0.77 +0.3
3,193,575 - ABZR86_RS14330 0.83 -0.2
3,193,879 + +0.2
3,193,879 + +1.3
3,193,896 + +0.3
3,194,005 + +0.2
3,194,005 + +0.0
3,194,006 - +0.5
3,194,012 + -0.0
3,194,013 - -0.6
3,194,091 + -0.3
3,194,091 + -0.3
3,194,091 + -0.4
3,194,091 + -0.4
3,194,276 + +0.3
3,194,277 - +1.2
3,194,277 - -0.2
3,194,277 - +0.1
3,194,443 - -1.2
3,194,678 + ABZR86_RS14335 0.16 +0.5
3,194,730 + ABZR86_RS14335 0.18 +0.2
3,194,778 - ABZR86_RS14335 0.20 +0.2
3,194,807 + ABZR86_RS14335 0.22 +0.4
3,194,807 + ABZR86_RS14335 0.22 -0.3
3,194,807 + ABZR86_RS14335 0.22 -0.1
3,194,808 - ABZR86_RS14335 0.22 -0.1
3,194,808 - ABZR86_RS14335 0.22 -0.6
3,194,951 + ABZR86_RS14335 0.27 -1.2
3,194,952 - ABZR86_RS14335 0.27 +0.2

Or see this region's nucleotide sequence