Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS12970

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS12965 and ABZR86_RS12970 are separated by 10 nucleotidesABZR86_RS12970 and ABZR86_RS12975 are separated by 68 nucleotides ABZR86_RS12965: ABZR86_RS12965 - parallel beta-helix domain-containing protein, at 2,907,249 to 2,908,475 _RS12965 ABZR86_RS12970: ABZR86_RS12970 - SO2930 family diheme c-type cytochrome, at 2,908,486 to 2,909,634 _RS12970 ABZR86_RS12975: ABZR86_RS12975 - TonB-dependent receptor, at 2,909,703 to 2,912,150 _RS12975 Position (kb) 2908 2909 2910Strain fitness (log2 ratio) -2 -1 0 1at 2907.756 kb on + strand, within ABZR86_RS12965at 2907.756 kb on + strand, within ABZR86_RS12965at 2907.756 kb on + strand, within ABZR86_RS12965at 2907.757 kb on - strand, within ABZR86_RS12965at 2907.757 kb on - strand, within ABZR86_RS12965at 2907.757 kb on - strand, within ABZR86_RS12965at 2907.852 kb on + strand, within ABZR86_RS12965at 2907.852 kb on + strand, within ABZR86_RS12965at 2907.852 kb on + strand, within ABZR86_RS12965at 2908.107 kb on + strand, within ABZR86_RS12965at 2908.107 kb on + strand, within ABZR86_RS12965at 2908.108 kb on - strand, within ABZR86_RS12965at 2908.122 kb on + strand, within ABZR86_RS12965at 2908.122 kb on + strand, within ABZR86_RS12965at 2908.123 kb on - strand, within ABZR86_RS12965at 2908.123 kb on - strand, within ABZR86_RS12965at 2908.123 kb on - strand, within ABZR86_RS12965at 2908.123 kb on - strand, within ABZR86_RS12965at 2908.125 kb on + strand, within ABZR86_RS12965at 2908.126 kb on - strand, within ABZR86_RS12965at 2908.152 kb on + strand, within ABZR86_RS12965at 2908.153 kb on - strand, within ABZR86_RS12965at 2908.182 kb on + strand, within ABZR86_RS12965at 2908.252 kb on + strand, within ABZR86_RS12965at 2908.252 kb on + strand, within ABZR86_RS12965at 2908.254 kb on + strand, within ABZR86_RS12965at 2908.255 kb on - strand, within ABZR86_RS12965at 2908.389 kb on + strandat 2908.389 kb on + strandat 2908.389 kb on + strandat 2908.390 kb on - strandat 2908.667 kb on - strand, within ABZR86_RS12970at 2908.747 kb on + strand, within ABZR86_RS12970at 2908.804 kb on + strand, within ABZR86_RS12970at 2908.805 kb on - strand, within ABZR86_RS12970at 2908.805 kb on - strand, within ABZR86_RS12970at 2908.805 kb on - strand, within ABZR86_RS12970at 2908.805 kb on - strand, within ABZR86_RS12970at 2908.853 kb on - strand, within ABZR86_RS12970at 2908.960 kb on + strand, within ABZR86_RS12970at 2908.960 kb on + strand, within ABZR86_RS12970at 2908.961 kb on - strand, within ABZR86_RS12970at 2908.961 kb on - strand, within ABZR86_RS12970at 2908.961 kb on - strand, within ABZR86_RS12970at 2908.964 kb on + strand, within ABZR86_RS12970at 2908.964 kb on + strand, within ABZR86_RS12970at 2908.965 kb on - strand, within ABZR86_RS12970at 2908.965 kb on - strand, within ABZR86_RS12970at 2909.062 kb on + strand, within ABZR86_RS12970at 2909.063 kb on - strand, within ABZR86_RS12970at 2909.063 kb on - strand, within ABZR86_RS12970at 2909.167 kb on + strand, within ABZR86_RS12970at 2909.167 kb on + strand, within ABZR86_RS12970at 2909.167 kb on + strand, within ABZR86_RS12970at 2909.222 kb on - strand, within ABZR86_RS12970at 2909.311 kb on + strand, within ABZR86_RS12970at 2909.709 kb on - strandat 2909.946 kb on - strandat 2910.093 kb on + strand, within ABZR86_RS12975at 2910.106 kb on + strand, within ABZR86_RS12975at 2910.106 kb on + strand, within ABZR86_RS12975at 2910.106 kb on + strand, within ABZR86_RS12975at 2910.107 kb on - strand, within ABZR86_RS12975at 2910.107 kb on - strand, within ABZR86_RS12975at 2910.107 kb on - strand, within ABZR86_RS12975at 2910.108 kb on + strand, within ABZR86_RS12975at 2910.109 kb on - strand, within ABZR86_RS12975at 2910.109 kb on - strand, within ABZR86_RS12975at 2910.285 kb on + strand, within ABZR86_RS12975at 2910.286 kb on - strand, within ABZR86_RS12975at 2910.358 kb on - strand, within ABZR86_RS12975at 2910.358 kb on - strand, within ABZR86_RS12975at 2910.358 kb on - strand, within ABZR86_RS12975at 2910.591 kb on + strand, within ABZR86_RS12975at 2910.592 kb on - strand, within ABZR86_RS12975at 2910.618 kb on + strand, within ABZR86_RS12975at 2910.618 kb on + strand, within ABZR86_RS12975at 2910.618 kb on + strand, within ABZR86_RS12975at 2910.619 kb on - strand, within ABZR86_RS12975

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,907,756 + ABZR86_RS12965 0.41 +0.4
2,907,756 + ABZR86_RS12965 0.41 +0.1
2,907,756 + ABZR86_RS12965 0.41 -0.5
2,907,757 - ABZR86_RS12965 0.41 -0.9
2,907,757 - ABZR86_RS12965 0.41 -1.4
2,907,757 - ABZR86_RS12965 0.41 -0.1
2,907,852 + ABZR86_RS12965 0.49 -0.2
2,907,852 + ABZR86_RS12965 0.49 -0.5
2,907,852 + ABZR86_RS12965 0.49 -0.3
2,908,107 + ABZR86_RS12965 0.70 +0.4
2,908,107 + ABZR86_RS12965 0.70 +0.2
2,908,108 - ABZR86_RS12965 0.70 -0.1
2,908,122 + ABZR86_RS12965 0.71 -0.3
2,908,122 + ABZR86_RS12965 0.71 +0.1
2,908,123 - ABZR86_RS12965 0.71 +0.8
2,908,123 - ABZR86_RS12965 0.71 +0.5
2,908,123 - ABZR86_RS12965 0.71 -0.3
2,908,123 - ABZR86_RS12965 0.71 +0.8
2,908,125 + ABZR86_RS12965 0.71 +0.1
2,908,126 - ABZR86_RS12965 0.71 +0.0
2,908,152 + ABZR86_RS12965 0.74 -0.0
2,908,153 - ABZR86_RS12965 0.74 +0.3
2,908,182 + ABZR86_RS12965 0.76 +0.8
2,908,252 + ABZR86_RS12965 0.82 -0.4
2,908,252 + ABZR86_RS12965 0.82 +0.6
2,908,254 + ABZR86_RS12965 0.82 +0.1
2,908,255 - ABZR86_RS12965 0.82 -0.6
2,908,389 + +0.1
2,908,389 + +0.5
2,908,389 + +0.3
2,908,390 - +0.5
2,908,667 - ABZR86_RS12970 0.16 -2.1
2,908,747 + ABZR86_RS12970 0.23 +0.8
2,908,804 + ABZR86_RS12970 0.28 +0.2
2,908,805 - ABZR86_RS12970 0.28 +0.8
2,908,805 - ABZR86_RS12970 0.28 -0.0
2,908,805 - ABZR86_RS12970 0.28 -1.0
2,908,805 - ABZR86_RS12970 0.28 +0.7
2,908,853 - ABZR86_RS12970 0.32 -0.0
2,908,960 + ABZR86_RS12970 0.41 -0.3
2,908,960 + ABZR86_RS12970 0.41 -0.8
2,908,961 - ABZR86_RS12970 0.41 +1.4
2,908,961 - ABZR86_RS12970 0.41 -0.9
2,908,961 - ABZR86_RS12970 0.41 -0.9
2,908,964 + ABZR86_RS12970 0.42 -0.6
2,908,964 + ABZR86_RS12970 0.42 +0.2
2,908,965 - ABZR86_RS12970 0.42 +0.2
2,908,965 - ABZR86_RS12970 0.42 +1.6
2,909,062 + ABZR86_RS12970 0.50 -0.1
2,909,063 - ABZR86_RS12970 0.50 -0.4
2,909,063 - ABZR86_RS12970 0.50 +0.3
2,909,167 + ABZR86_RS12970 0.59 -1.3
2,909,167 + ABZR86_RS12970 0.59 -0.2
2,909,167 + ABZR86_RS12970 0.59 +0.4
2,909,222 - ABZR86_RS12970 0.64 -0.3
2,909,311 + ABZR86_RS12970 0.72 -0.3
2,909,709 - +0.6
2,909,946 - -0.4
2,910,093 + ABZR86_RS12975 0.16 -0.2
2,910,106 + ABZR86_RS12975 0.16 -0.7
2,910,106 + ABZR86_RS12975 0.16 -0.1
2,910,106 + ABZR86_RS12975 0.16 -0.3
2,910,107 - ABZR86_RS12975 0.17 -1.0
2,910,107 - ABZR86_RS12975 0.17 +0.0
2,910,107 - ABZR86_RS12975 0.17 -0.2
2,910,108 + ABZR86_RS12975 0.17 +0.2
2,910,109 - ABZR86_RS12975 0.17 +0.7
2,910,109 - ABZR86_RS12975 0.17 +0.3
2,910,285 + ABZR86_RS12975 0.24 +0.6
2,910,286 - ABZR86_RS12975 0.24 +0.7
2,910,358 - ABZR86_RS12975 0.27 -1.8
2,910,358 - ABZR86_RS12975 0.27 +0.3
2,910,358 - ABZR86_RS12975 0.27 +0.1
2,910,591 + ABZR86_RS12975 0.36 +0.7
2,910,592 - ABZR86_RS12975 0.36 +1.3
2,910,618 + ABZR86_RS12975 0.37 +0.1
2,910,618 + ABZR86_RS12975 0.37 -1.0
2,910,618 + ABZR86_RS12975 0.37 -0.0
2,910,619 - ABZR86_RS12975 0.37 -0.2

Or see this region's nucleotide sequence