Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08245

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08235 and ABZR86_RS08240 overlap by 1 nucleotidesABZR86_RS08240 and ABZR86_RS08245 overlap by 8 nucleotidesABZR86_RS08245 and ABZR86_RS08250 are separated by 49 nucleotidesABZR86_RS08250 and ABZR86_RS08255 are separated by 125 nucleotides ABZR86_RS08235: ABZR86_RS08235 - phosphate ABC transporter permease subunit PstC, at 1,833,469 to 1,834,485 _RS08235 ABZR86_RS08240: ABZR86_RS08240 - phosphate ABC transporter permease PstA, at 1,834,485 to 1,835,357 _RS08240 ABZR86_RS08245: ABZR86_RS08245 - phosphate ABC transporter ATP-binding protein PstB, at 1,835,350 to 1,836,156 _RS08245 ABZR86_RS08250: ABZR86_RS08250 - phosphate signaling complex protein PhoU, at 1,836,206 to 1,836,940 _RS08250 ABZR86_RS08255: ABZR86_RS08255 - quaternary ammonium compound efflux SMR transporter SugE, at 1,837,066 to 1,837,389 _RS08255 Position (kb) 1835 1836 1837Strain fitness (log2 ratio) -3 -2 -1 0 1at 1836.206 kb on - strandat 1836.206 kb on - strandat 1836.206 kb on - strandat 1836.242 kb on + strandat 1836.242 kb on + strandat 1836.243 kb on - strandat 1836.243 kb on - strandat 1836.665 kb on + strand, within ABZR86_RS08250at 1836.704 kb on + strand, within ABZR86_RS08250at 1836.734 kb on + strand, within ABZR86_RS08250at 1836.735 kb on - strand, within ABZR86_RS08250at 1836.994 kb on - strandat 1836.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,836,206 - -0.1
1,836,206 - -0.9
1,836,206 - -0.5
1,836,242 + -1.2
1,836,242 + -2.5
1,836,243 - -3.0
1,836,243 - -3.3
1,836,665 + ABZR86_RS08250 0.62 -2.3
1,836,704 + ABZR86_RS08250 0.68 -3.3
1,836,734 + ABZR86_RS08250 0.72 -0.8
1,836,735 - ABZR86_RS08250 0.72 -1.2
1,836,994 - +0.1
1,836,994 - +0.3

Or see this region's nucleotide sequence