Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05295

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05290 and ABZR86_RS05295 are separated by 107 nucleotidesABZR86_RS05295 and ABZR86_RS05300 are separated by 227 nucleotides ABZR86_RS05290: ABZR86_RS05290 - TonB-dependent receptor, at 1,190,142 to 1,192,871 _RS05290 ABZR86_RS05295: ABZR86_RS05295 - glucokinase, at 1,192,979 to 1,194,046 _RS05295 ABZR86_RS05300: ABZR86_RS05300 - class I SAM-dependent methyltransferase, at 1,194,274 to 1,195,164 _RS05300 Position (kb) 1192 1193 1194 1195Strain fitness (log2 ratio) -1 0 1 2at 1192.010 kb on - strand, within ABZR86_RS05290at 1192.222 kb on + strand, within ABZR86_RS05290at 1192.222 kb on + strand, within ABZR86_RS05290at 1192.223 kb on - strand, within ABZR86_RS05290at 1192.223 kb on - strand, within ABZR86_RS05290at 1192.250 kb on + strand, within ABZR86_RS05290at 1192.251 kb on - strand, within ABZR86_RS05290at 1192.280 kb on + strand, within ABZR86_RS05290at 1192.280 kb on + strand, within ABZR86_RS05290at 1192.296 kb on - strand, within ABZR86_RS05290at 1192.339 kb on + strand, within ABZR86_RS05290at 1192.339 kb on + strand, within ABZR86_RS05290at 1192.339 kb on + strand, within ABZR86_RS05290at 1192.339 kb on + strand, within ABZR86_RS05290at 1192.339 kb on + strand, within ABZR86_RS05290at 1192.339 kb on + strand, within ABZR86_RS05290at 1192.339 kb on + strand, within ABZR86_RS05290at 1192.340 kb on - strand, within ABZR86_RS05290at 1192.340 kb on - strand, within ABZR86_RS05290at 1192.340 kb on - strand, within ABZR86_RS05290at 1192.340 kb on - strand, within ABZR86_RS05290at 1192.340 kb on - strand, within ABZR86_RS05290at 1192.340 kb on - strand, within ABZR86_RS05290at 1192.340 kb on - strand, within ABZR86_RS05290at 1192.340 kb on - strand, within ABZR86_RS05290at 1192.341 kb on + strand, within ABZR86_RS05290at 1192.342 kb on - strand, within ABZR86_RS05290at 1192.381 kb on + strand, within ABZR86_RS05290at 1192.382 kb on - strand, within ABZR86_RS05290at 1192.382 kb on - strand, within ABZR86_RS05290at 1192.946 kb on + strandat 1192.946 kb on + strandat 1192.946 kb on + strandat 1192.946 kb on + strandat 1192.946 kb on + strandat 1192.946 kb on + strandat 1192.946 kb on + strandat 1192.946 kb on + strandat 1192.946 kb on + strandat 1192.946 kb on + strandat 1192.946 kb on + strandat 1192.947 kb on - strandat 1192.947 kb on - strandat 1192.947 kb on - strandat 1193.009 kb on - strandat 1193.178 kb on + strand, within ABZR86_RS05295at 1193.178 kb on + strand, within ABZR86_RS05295at 1193.178 kb on + strand, within ABZR86_RS05295at 1193.178 kb on + strand, within ABZR86_RS05295at 1193.334 kb on + strand, within ABZR86_RS05295at 1193.335 kb on - strand, within ABZR86_RS05295at 1193.355 kb on + strand, within ABZR86_RS05295at 1193.355 kb on + strand, within ABZR86_RS05295at 1193.356 kb on - strand, within ABZR86_RS05295at 1193.356 kb on - strand, within ABZR86_RS05295at 1193.394 kb on + strand, within ABZR86_RS05295at 1193.395 kb on - strand, within ABZR86_RS05295at 1193.625 kb on + strand, within ABZR86_RS05295at 1193.625 kb on + strand, within ABZR86_RS05295at 1193.625 kb on + strand, within ABZR86_RS05295at 1193.626 kb on - strand, within ABZR86_RS05295at 1193.936 kb on - strand, within ABZR86_RS05295at 1194.148 kb on + strandat 1194.149 kb on - strandat 1194.193 kb on + strandat 1194.193 kb on + strandat 1194.193 kb on + strandat 1194.194 kb on - strandat 1194.439 kb on + strand, within ABZR86_RS05300at 1194.496 kb on + strand, within ABZR86_RS05300at 1194.496 kb on + strand, within ABZR86_RS05300at 1194.530 kb on - strand, within ABZR86_RS05300at 1194.884 kb on + strand, within ABZR86_RS05300at 1194.885 kb on - strand, within ABZR86_RS05300at 1194.885 kb on - strand, within ABZR86_RS05300at 1194.937 kb on + strand, within ABZR86_RS05300at 1194.938 kb on - strand, within ABZR86_RS05300at 1194.958 kb on + strand, within ABZR86_RS05300at 1194.959 kb on - strand, within ABZR86_RS05300

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,192,010 - ABZR86_RS05290 0.68 -0.3
1,192,222 + ABZR86_RS05290 0.76 -0.3
1,192,222 + ABZR86_RS05290 0.76 +0.1
1,192,223 - ABZR86_RS05290 0.76 +0.0
1,192,223 - ABZR86_RS05290 0.76 +0.3
1,192,250 + ABZR86_RS05290 0.77 -0.5
1,192,251 - ABZR86_RS05290 0.77 -0.0
1,192,280 + ABZR86_RS05290 0.78 +0.7
1,192,280 + ABZR86_RS05290 0.78 +0.1
1,192,296 - ABZR86_RS05290 0.79 +0.1
1,192,339 + ABZR86_RS05290 0.80 +0.2
1,192,339 + ABZR86_RS05290 0.80 +0.2
1,192,339 + ABZR86_RS05290 0.80 +0.3
1,192,339 + ABZR86_RS05290 0.80 +0.1
1,192,339 + ABZR86_RS05290 0.80 -0.4
1,192,339 + ABZR86_RS05290 0.80 +0.7
1,192,339 + ABZR86_RS05290 0.80 +0.6
1,192,340 - ABZR86_RS05290 0.81 -0.5
1,192,340 - ABZR86_RS05290 0.81 +0.0
1,192,340 - ABZR86_RS05290 0.81 -1.1
1,192,340 - ABZR86_RS05290 0.81 -0.2
1,192,340 - ABZR86_RS05290 0.81 +1.2
1,192,340 - ABZR86_RS05290 0.81 +0.1
1,192,340 - ABZR86_RS05290 0.81 +0.0
1,192,340 - ABZR86_RS05290 0.81 -0.3
1,192,341 + ABZR86_RS05290 0.81 +0.7
1,192,342 - ABZR86_RS05290 0.81 -0.5
1,192,381 + ABZR86_RS05290 0.82 +0.9
1,192,382 - ABZR86_RS05290 0.82 -0.1
1,192,382 - ABZR86_RS05290 0.82 +0.0
1,192,946 + -1.1
1,192,946 + -0.0
1,192,946 + +0.2
1,192,946 + -0.7
1,192,946 + -0.5
1,192,946 + +0.4
1,192,946 + -0.3
1,192,946 + +0.3
1,192,946 + +0.6
1,192,946 + +0.6
1,192,946 + +0.5
1,192,947 - -0.1
1,192,947 - +0.5
1,192,947 - +0.9
1,193,009 - +0.3
1,193,178 + ABZR86_RS05295 0.19 -0.6
1,193,178 + ABZR86_RS05295 0.19 +0.2
1,193,178 + ABZR86_RS05295 0.19 +0.2
1,193,178 + ABZR86_RS05295 0.19 +0.5
1,193,334 + ABZR86_RS05295 0.33 +0.3
1,193,335 - ABZR86_RS05295 0.33 +0.2
1,193,355 + ABZR86_RS05295 0.35 -0.5
1,193,355 + ABZR86_RS05295 0.35 -0.6
1,193,356 - ABZR86_RS05295 0.35 +0.3
1,193,356 - ABZR86_RS05295 0.35 -0.9
1,193,394 + ABZR86_RS05295 0.39 -0.3
1,193,395 - ABZR86_RS05295 0.39 +0.2
1,193,625 + ABZR86_RS05295 0.60 -0.0
1,193,625 + ABZR86_RS05295 0.60 +0.3
1,193,625 + ABZR86_RS05295 0.60 +0.0
1,193,626 - ABZR86_RS05295 0.61 +0.6
1,193,936 - ABZR86_RS05295 0.90 +0.8
1,194,148 + -0.3
1,194,149 - -1.0
1,194,193 + -0.5
1,194,193 + -0.1
1,194,193 + +0.3
1,194,194 - +1.0
1,194,439 + ABZR86_RS05300 0.19 -0.4
1,194,496 + ABZR86_RS05300 0.25 +1.8
1,194,496 + ABZR86_RS05300 0.25 -0.4
1,194,530 - ABZR86_RS05300 0.29 +0.0
1,194,884 + ABZR86_RS05300 0.68 +0.6
1,194,885 - ABZR86_RS05300 0.69 +0.2
1,194,885 - ABZR86_RS05300 0.69 +0.0
1,194,937 + ABZR86_RS05300 0.74 +0.7
1,194,938 - ABZR86_RS05300 0.75 -0.5
1,194,958 + ABZR86_RS05300 0.77 +0.0
1,194,959 - ABZR86_RS05300 0.77 -1.1

Or see this region's nucleotide sequence